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Oryza sativa
cluster # 14126 cluster # 14126       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14126#0 length = 1169 sequences # 12  
consensus_14126#1 length = 935 sequences # 1  
consensus_14126#2 length = 681 sequences # 2  

consensusID : consensus_14126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1169
fasta sequence
                              [CTCCGCACGCCGTCCTGTCAGTCGCGACCCACTCCATCGGTCCCAACCCTCTGTCTTCTTCTACCCGCGTACTACTCCAGT-GT-GAG-AGCAG-AG-AGCTCTGAGC-TCAGC-TCATCCCCAGC-TGCCTACCTACAATTGC-GGTGGGTGC-GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT-GGAGTCAGCGGCGGCGT-TGGCGTTGGTTCTT-GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC-TGC-TGCAGAAGGCGATCGACTAC-TCGTGCGGGCAGGGGGCGGAC-TGCACGTCCATCCTCTCCAGCGGCGGCTGC-TAC-AACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAACAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAACTTCGACGGCGCGGCCGCGGAGGCCGGCTTGCTCCCGAGGGCTGAGCCGGCCATCTTCTTCACCGTCCTCCTCCTCTCGTTCTTGGCATTGCCATGAAGTGATCTCTCTCTCACTCTCCCTGTGATGGTAGAAGAAAGCAGCAGTAGATCAAACTCCTCTTTGTATTTTACTATTTTTCAGTATAGTTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGAAAAGTTTGATTGGTTGGAGAGAAGAGAATCCAAATTGATCCATCTGCCCACTAGCACTAGGGATTGCTGCTAGCTGCTGTTCTTGTTGCTTAGTGTTGTGATGGTGTGAGAGTATAACTTTTTGGTTGAAGTATACTATACTATACCTTTTTATGGCTCATACTGCAGGCTGCTGGTGCATATGGTTTGGTAGGATGTCTATCTCTTTCCTACTAGTTC]

[+] EMBL OSR0060A             [CTCCGCACGCCGTCCTGTCAGTCGCGACCCACTCCATCGGTCCCAACCCTCTGTCTTCTTCTACCCGCGTACTACTCCAGT GT GAG AGCAG AG AGCTCTGAGC TCAGC TCATCCCCAGC TGCCTACCTACAATTGC GGTGGGTGC GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGG GC TGC TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C27870               [       CGCCGTCCTGTCAGTCGCGACCCACTCCATCGGTCCCAACCCTCTGTCTTCTTCTACCCGCGTACTACTCCAGT GT GAG AGCAG AG AGCTCTGAGC TCAGC TCATCCCCAGC TGCCTACCTACAATTGC GGTGGGTGC GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGATGGGAGTCAGCGGCGGCGTNTGGCGTTGGTTCTT GCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU173220             [                                                                       CTACTCCAGTGGTGGAGNAGCAGNAGNAGCTCTGAGCTTNAGCTTNATCCCCAGCTTGCCTACCTACAATTGCGGGGGGGTGCGGGGGGCCCTCCTCCTCCNTCCCGCGCATTACAACAGNTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGNTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC TGC TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGNTGC TAC AACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAACAGCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSR1726A             [                                                                        TACTCCAGT GT GAG AGCAG AG AGCTCTGAGC TCAGC TCATCCCCAGC TGCCTACCTACAATTGC GGTGGGTGC GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC TGC TGCAGAAGGCGATCGACTAC TCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSR1936A             [                                                                        TACTCCAGT GT GAG AGCAG AG AGCTCTGAGC TCAGC TCATCCCCAGC TGCCTACCTACAATTGC GGTGGGTGC GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGNGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGCTTGC TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTNTTCAGCGGNGGCTGC TAC AACCCAAACAACGTNGGCG CCACTGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C73824               [                                                                                                                     ATCCCCAGC TGCCTACCTACAATTNC GGTGGGTGC GGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC TGCTTGCAGAAGGCGATCGACTACTTCGTGCGGGCAGGGGGCGGACTTGCACGTCCATCCTCTTCAGCGGCGGCTGCTTACAAACCCAAACAACGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C73986               [                                                                                                                                              GC GGTGGGTGC GGCGGCCCTCCNCCTCCCTCCCGCGCATNACAACAGCTACGCTACGGCCCCACCCAACNGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TNGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCNGCGTGTGNCGGTCGGAGCAGCCGACGGCGC TGC TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGCNGC NAC AACCCAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK099491             [                                                                                                                                                                                    CATTACAACAGCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTTAATTCGACCGGCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTT GCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC TGC TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGCTGC TAC AACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAACAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAACTTCGACGGCGCGGCCGCGGAGGCCGGCTTGCTCCCGAGGGCTGAGCCGGCCATCTTCTTCACCGTCCTCCTCCTCTCGTTCTTGGCATTGCCATGAAGTGATCTCTCTCTCACTCTCCCTGTGATGGTAGAAGAAAGCAGCAGTAGATCAAACTCCTCTTTGTATTTTACTATTTTTCAGTATAGTTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGAAAAGTTTGATTGGTTGGAGAGAAGAGAATCCAAATTGATCCATCTGCCCACTAGCACTAGGGATTGCTGCTAGCTGCTGTTCTTGTTGCTTAGTGTTGTGATGGTGTGAGAGTATAACTTTTTGGTT                                                                                            ]
[+] EMBL BI811563             [                                                                                                                                                                                                                       CTCTTCCTACGCGCGGTCATCGTCTGCTTCTTG TAATTCGACCGCCGGTGAT GGAGTCAGCGGCGGCGT TGGCGTTGGTTCTTGGCGGTGCTCCTCCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGCGC TGC TGCAGAAGGCGATCGACTAC TCGTGCGGCCA GGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGCTGC TAC AACCCAAACACCGTCGCCGCCCACTGCTCCT GGCCGCCAACAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGCTGGGACAACTGGCTTGAG CCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU097618             [                                                                                                                                                                                                                                                                                                                                                                                            TGCAGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGCTGC TAC AACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAACAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU164209             [                                                                                                                                                                                                                                                                                                                                                                                               AGAAGGCGATCGACTAC TCGTGCGGGCAGGGGGCGGAC TGCACGTCCATCCTCTCCAGCGGCGGCTGC TAC AACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAACAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU064204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATCAAACTCCTCTTTGTATTTTACTATTTTTCAGTATAGTTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGAAAAGTTTGATTGGTTGGAGAGAAGAGAATCCAAATTGATCCATCTGCCCACTAGCACTAGGGATTGCTGCTAGCTGCTGTTCTTGTTGCTTAGTGTTGTGATGGTGTGAGAGTATAACTTTTTGGTTGAAGTATACTATACTATACCTTTTTATGGCTCATACTGCAGGCTGCTGGTGCATATGGTTTGGTAGGATGTCTATCTCTTTCCTACTAGTTC]


>consensus_14126#0 CTCCGCACGCCGTCCTGTCAGTCGCGACCCACTCCATCGGTCCCAACCCTCTGTCTTCTT CTACCCGCGTACTACTCCAGTGTGAGAGCAGAGAGCTCTGAGCTCAGCTCATCCCCAGCT GCCTACCTACAATTGCGGTGGGTGCGGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACA GCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTT AATTCGACCGGCGGTGATGGAGTCAGCGGCGGCGTTGGCGTTGGTTCTTGCGGTGCTCCT CCTCTCCTCCACCCTCGCGGCTTCAGATTTCTGCGTGTGCCGGTCGGAGCAGCCGACGGC GCTGCTGCAGAAGGCGATCGACTACTCGTGCGGGCAGGGGGCGGACTGCACGTCCATCCT CTCCAGCGGCGGCTGCTACAACCCAAACACCGTCGCCGCCCACTGCTCCTGGGCCGCCAA CAGCTACTTCCAGAAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGGCGCCGCCAC CCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGCCAGTGCTGC TGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGG CGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCAC GAGCAACTTCGACGGCGCGGCCGCGGAGGCCGGCTTGCTCCCGAGGGCTGAGCCGGCCAT CTTCTTCACCGTCCTCCTCCTCTCGTTCTTGGCATTGCCATGAAGTGATCTCTCTCTCAC TCTCCCTGTGATGGTAGAAGAAAGCAGCAGTAGATCAAACTCCTCTTTGTATTTTACTAT TTTTCAGTATAGTTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGAAAAGTTTGAT TGGTTGGAGAGAAGAGAATCCAAATTGATCCATCTGCCCACTAGCACTAGGGATTGCTGC TAGCTGCTGTTCTTGTTGCTTAGTGTTGTGATGGTGTGAGAGTATAACTTTTTGGTTGAA GTATACTATACTATACCTTTTTATGGCTCATACTGCAGGCTGCTGGTGCATATGGTTTGG TAGGATGTCTATCTCTTTCCTACTAGTTC



consensusID : consensus_14126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 935
fasta sequence
                              [AGCGCAGTTACACCCAAACCAGCAGCATCGACGATTCGCCGAGCTAGGGGCAGAGGCAGAAGTGCAGAACGTACACGCGTGGTGAGCAGAGGAGCAATGGCGACTCGGCTTCTGCTGCTGCTGCTGCTCTTGCTCGGCATGTCGCTGAAAGGATCAGAGGGGGCGTGGTGCGTGTGCAGGCCGGACGTGGCGGAGGCGGCGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCACGGCGCGGACTGCGCCCCGGTGACGCCGAGCGGGTCGTGCTACAGCCCAAACAACGTGGCGGCGCACTGCTCCTACGCCGCCAACAGCTACTTCCAGCGGAATTCCCAGGCCAAGGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCACCGACCCCAGCTCAGGAACCTGCAAATACCCTGCAACCGCAAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCACCGTCCCCGTCCCTTGGACGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCGTGCTAGTGTCAGCACAT]

[+] EMBL AK108127             [AGCGCAGTTACACCCAAACCAGCAGCATCGACGATTCGCCGAGCTAGGGGCAGAGGCAGAAGTGCAGAACGTACACGCGTGGTGAGCAGAGGAGCAATGGCGACTCGGCTTCTGCTGCTGCTGCTGCTCTTGCTCGGCATGTCGCTGAAAGGATCAGAGGGGGCGTGGTGCGTGTGCAGGCCGGACGTGGCGGAGGCGGCGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCACGGCGCGGACTGCGCCCCGGTGACGCCGAGCGGGTCGTGCTACAGCCCAAACAACGTGGCGGCGCACTGCTCCTACGCCGCCAACAGCTACTTCCAGCGGAATTCCCAGGCCAAGGGCGCCACCTGCGACTTCGGCGGCGCCGCCACCCTCTCCTCCACCGACCCCAGCTCAGGAACCTGCAAATACCCTGCAACCGCAAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCACCGTCCCCGTCCCTTGGACGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCGTGCTAGTGTCAGCACAT]


>consensus_14126#1 AGCGCAGTTACACCCAAACCAGCAGCATCGACGATTCGCCGAGCTAGGGGCAGAGGCAGA AGTGCAGAACGTACACGCGTGGTGAGCAGAGGAGCAATGGCGACTCGGCTTCTGCTGCTG CTGCTGCTCTTGCTCGGCATGTCGCTGAAAGGATCAGAGGGGGCGTGGTGCGTGTGCAGG CCGGACGTGGCGGAGGCGGCGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCACGGCGCG GACTGCGCCCCGGTGACGCCGAGCGGGTCGTGCTACAGCCCAAACAACGTGGCGGCGCAC TGCTCCTACGCCGCCAACAGCTACTTCCAGCGGAATTCCCAGGCCAAGGGCGCCACCTGC GACTTCGGCGGCGCCGCCACCCTCTCCTCCACCGACCCCAGCTCAGGAACCTGCAAATAC CCTGCAACCGCAAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACA GGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCA GCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGCGGCGGCGCGTCT GGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCACCGTCCCCGTCCCTTGGA CGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAG TAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGG CTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAG GTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGC ATGTTTAGTATGTTATCGTGCTAGTGTCAGCACAT



consensusID : consensus_14126#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 681
fasta sequence
                              [GAACCTGCAAATACCCTGCAACCGCAAGGTGATTAACCTTCAACTTTCAATGGCCAAACTCAAACTGAATAAAATTAGCATCTGTGCTTGGAAGATGAACCCATGATTCATGAACTGAAGCATTTTCCTTTTCACATGTTCTTGTGCAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCAC-CGTCCCCGTCCCTTGGACGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCGTGCTAGTGTCAGCACATTCTCACTGATATTATTGAATTCCTACTCAGT]

[+] EMBL CB000899             [GAACCTGCAAATACCCTGCAACCGCAAGGTGATTAACCTTCAACTTTCAATGGCCAAACTCAAACTGAATAAAATTAGCATCTGTGCTTGGAAGATGAACCCATGATTCATGAACTGAAGCATTTTCCTTTTCACATGTTCTTGTGCAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCAC CGTCCCCGTCCCTTGGACGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCGTGCTAGTGTCAGCACATTCTCACTGATATTATTGAATTCCTACTCAGT]
[+] EMBL OS1321915            [                                                                                                                                                  CAGTGCTGCAGGGACAAGCACCGGAACCGGCACGNNGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATCGGGGTCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCNAAG ACTTGTCCCNGTCCCTTGGAGTTTATCTTCTCCTCACGTGCATTG                                                                                                                                                                                                                                                                                         ]


>consensus_14126#2 GAACCTGCAAATACCCTGCAACCGCAAGGTGATTAACCTTCAACTTTCAATGGCCAAACT CAAACTGAATAAAATTAGCATCTGTGCTTGGAAGATGAACCCATGATTCATGAACTGAAG CATTTTCCTTTTCACATGTTCTTGTGCAGTGCTGCAGGGACAAGCACCGGAACCGGCACG GCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCG GGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGATC GGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCACCG TCCCCGTCCCTTGGACGTCATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAAT TTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTGAACTGAAGCAGCATACTGTGGG AGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTTCT TTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGC CGTTTGCATCATGGCATGTTTAGTATGTTATCGTGCTAGTGTCAGCACATTCTCACTGAT ATTATTGAATTCCTACTCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14126#1      ------------------------------------------------------------
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      CTCCGCACGCCGTCCTGTCAGTCGCGACCCACTCCATCGGTCCCAACCCTCTGTCTTCTT 60
                                                                                   

consensus_14126#1      ------------------------------------------------------------
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      CTACCCGCGTACTACTCCAGTGTGAGAGCAGAGAGCTCTGAGCTCAGCTCATCCCCAGCT 120
                                                                                   

consensus_14126#1      ------------------------------------------------AGCGCAGTTACA 12
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      GCCTACCTACAATTGCGGTGGGTGCGGCGGCCCTCCTCCTCCCTCCCGCGCATTACAACA 180
                                                                                   

consensus_14126#1      CCCAAACCAGCAGCATCGACGATTCGCCGAGCTAGGGGCAGAGGCAGAA-GTGCAGAACG 71
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      GCTACGCTACGGCCCCACCCAACTGCTCTTCCTACGCGCGGTCATCGTCTGCTTCTTGTT 240
                                                                                   

consensus_14126#1      TACACGCGTGGTGAGCAGAGGAGCAATGGCGACTCGGCTTCTGCTGCTGCTGCTGCTCTT 131
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      AATTCGACCGGCGGTGATGGAGTCAGCGGCGGCGTTGGCGTTGGTTCTTGCGGTGCTCCT 300
                                                                                   

consensus_14126#1      GCTCGGCATGTCGCTGAAAGGATCAGAGGGGGCGTGGTGCGTGTGCAGGCCGGACGTGGC 191
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      CCTCTCCTCCACCCTCGCGGCTTCAGAT------TTCTGCGTGTGCCGGTCGGAGCAGCC 354
                                                                                   

consensus_14126#1      GGAGGCGGCGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCACGGCGCGGACTGCGCCCC 251
consensus_14126#2      ------------------------------------------------------------
consensus_14126#0      GACGGCGCTGCTGCAGAAGGCGATCGACTACTCGTGCGGGCAGGGGGCGGACTGCACGTC 414
                                                                                   

consensus_14126#1      GGTGACGCCGAGCGGGTCGTGCTACAGCCCAAACAACGTGGCGGCGCACTGCTCCTACGC 311
consensus_14126#2      --------------GAACCTGCAAATACCCTGCAACCGCAA-GGTG-ATTAACCTTCAAC 44
consensus_14126#0      CATCCTCTCCAGCGGCGGCTGCTACAACCCAAACACCGTCGCCGCCCACTGCTCCTGGGC 474
                                     *    *** *   ***    * **     *   * *   * *   *

consensus_14126#1      CGCCAACAGCTACTTCCAGCGGAATTCCCAGGCCAAGGGCGCCACCTGCGACTTCGGCGG 371
consensus_14126#2      TTTCAATGGCCAAACTCA----AACT----GAATAAAATTAGCATCTGTG-CTTGGAAGA 95
consensus_14126#0      CGCCAACAGCTACTTCCAG---AAGTTCAGGGCCTCCGGCGCCACCTGCGACTTCGGCGG 531
                          ***  ** *    **    ** *    *           ** *** * *** *  * 

consensus_14126#1      CGCCGCCACCCTCTCCTCCACCGACCCCAGCTCAGGAACCTGCAAATACCCTGCAACCGC 431
consensus_14126#2      TG-----AACCCATGATTCATGAACTGAAGCATTTTCCTTTTCACATGTTCTTGTGC--- 147
consensus_14126#0      CGCCGCCACCCTCTCCTCCTCCGACCCCAGTTTCTCTGGATGCACTTTCCCTTCCAGTGC 591
                        *     * **  *  * *    **   **          * **  *   **        

consensus_14126#1      AAGTGCTGCAGGGACAA---------------------GCACCGGAACCGGCACGGCGGG 470
consensus_14126#2      -AGTGCTGCAGGGACAA---------------------GCACCGGAACCGGCACGGCGGG 185
consensus_14126#0      CAGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAG 651
                        ******** *******                     ******* ********   * *

consensus_14126#1      TGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTC 530
consensus_14126#2      TGCAGGCACAGGCACCGGTACAAGCACGAGCACGAGCACGAGCACTTCTTCCCCGGGCTC 245
consensus_14126#0      CCCCGGAGGCGGCATCGGAACCGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCC 711
                         * **    **** *** **  **** *     * *  **         *** * ** *

consensus_14126#1      TTCAACTGC-AGCCACGGGTACGCCGATCATGGGAGGGACC-TTCGCTACGCCGATCGGC 588
consensus_14126#2      TTCAACTGC-AGCCACGGGTACGCCGATCATGGGAGGGACC-TTCGCTACGCCGATCGGC 303
consensus_14126#0      GCCGGGCACGAGCAACTTCGACGGCGCGGCCGCGGAGGCCGGCTTGCTCCCGAGGGCTGA 771
                         *     * *** **    *** **     * *  ** *   * *** *   *  * * 

consensus_14126#1      GGCGGCGCGTCTGGGCCGACGACTAGCGCCT-TGAATCCTGACA--GCAGCGAAGCA--- 642
consensus_14126#2      GGCGGCGCGTCTGGGCCGACGACTAGCGCCT-TGAATCCTGACA--GCAGCGAAGCA--- 357
consensus_14126#0      GCCGGC-CATCTTCTTCACCGTCCTCCTCCTCTCGTTCTTGGCATTGCCATGAAGTGATC 830
                       * **** * ***    *  ** *   * *** *   ** ** **  **   ****     

consensus_14126#1      ---CCGTCCCCGTCCCTTGGACGTCATCTTCTCCTCAC-GTGCATTGCCTCCATGCTGCT 698
consensus_14126#2      ---CCGTCCCCGTCCCTTGGACGTCATCTTCTCCTCAC-GTGCATTGCCTCCATGCTGCT 413
consensus_14126#0      TCTCTCTCACTCTCCCTGTGATGGTAGAAGAAAGCAGCAGTAGATCAAACTCCTCTTTGT 890
                          *  ** *  *****  ** *  *           * **  **      * *  *  *

consensus_14126#1      CTCTAATTTTCTTTTGGCGTAGT--------AATTTGGCCGGAAAGTAACGTGAACTGAA 750
consensus_14126#2      CTCTAATTTTCTTTTGGCGTAGT--------AATTTGGCCGGAAAGTAACGTGAACTGAA 465
consensus_14126#0      ATTTTACTATTTTTCAGTATAGTTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGA 950
                        * * * * * ***  *  ****         ** *  *   *  * **     *    *

consensus_14126#1      GCAGCATACT--GTGGGAGAATGGAGA-TTTGGCTTTCCTTTTCTGCTT--------TGG 799
consensus_14126#2      GCAGCATACT--GTGGGAGAATGGAGA-TTTGGCTTTCCTTTTCTGCTT--------TGG 514
consensus_14126#0      AAAGTTTGATTGGTTGGAGAGAAGAGAATCCAAATTGATCCATCTGCCCACTAGCACTAG 1010
                         **  *  *  ** *****   **** *     **      *****          * *

consensus_14126#1      AGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCT 859
consensus_14126#2      AGCTTGTCGCGGCCTGTTCTTTTTCTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCT 574
consensus_14126#0      GGATTGCTGCTAGCTGCTGTTCTTGTTGCTTAGTGTTGT-GATGGTGTGAGAGTATAACT 1069
                        * ***  **   *** * ** ** **    **   **  * *  ** * *  ** * **

consensus_14126#1      GTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCG- 918
consensus_14126#2      GTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATGTTTAGTATGTTATCG- 633
consensus_14126#0      TTTTGGTTGAAGTATACTATACTATACCTTT---TTATGGCTCATACTGCAGGCTGCTGG 1126
                        **        *   * *  ***   * ***   * *****   *   * * * *   * 

consensus_14126#1      TGCTAGTGTCAGCACAT------------------------------- 935
consensus_14126#2      TGCTAGTGTCAGCACATTCTCACTGATATTATTGAATTCCTACTCAGT 681
consensus_14126#0      TGCATATGGTTTGGTAGGATGTCTATCTCTTTCCTACTAGTTC----- 1169
                       ***   **       *                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)