These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1789 fasta sequence [CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACTAAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGACGGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCATTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGAGAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCTTTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTATGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGGATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTAAACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTCATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGTTAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTACATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCCAAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTGTTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTAAGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAAGGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTTTGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCAATGAAGTGCCAAATTTTTATGGGTCAATTTCCATTTGGATTGGTACCAATGAAGGATCACCAAATTTTTTTTTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTGAACAGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTTCTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTT] [+] EMBL AK103903 [CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACTAAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGACGGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCATTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGAGAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCTTTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTATGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGGATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTAAACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTCATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGTTAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTACATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCCAAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTGTTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTAAGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAAGGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTTTGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCAATGAAGTGCCAAATTTTTATGGGTCAATTTCCATTTGGATTGGTACCAATGAAGGATCACCAAATTTTTTTTTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTGAACAGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTTCTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTT] consensusID : consensus_14130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1141 fasta sequence [AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG-TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA-TCAACCAGC-TGATG-TTATC-TGAAGAGAA-TAGATTTGCTTT-CACAA-TAGAGGTGGCTGAGGAAGC-TAACTC-TTATC-TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC-TATACTACAT-GTGCTCAGTGACCGCATGAA-TG-AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG-AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC-TATAAAAAGTGAACAGTGA-GTTCTGCCGTG-A-AA-ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA-AAAGATCCA-TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCTGCA] [+] EMBL AU101217 [AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGG GGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGGTTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATTCAACCAGCTTGATGTTTATCTTGAAGAGAATTAGATTTGCTTTCCACAATTAGAGGTGGCTGAGGAAGCTTAACTCTTTATCTTTGAAAA ] [+] EMBL AK102719 [ AGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTGCAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAG AAAGTCAAGATATTATACTCCTGC ] [+] EMBL CF279400 [ AGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAANTG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGC ] [+] EMBL CF332477 [ GGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGC ] [+] EMBL AU181025 [ CCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC T ] [-] EMBL CF332478 [ GATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGCTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCAaaaaaa ] [+] EMBL AU101218 [ TGGAAAAACCTTATACTACATGGGGCTCAGTGACCGCATGAA TGAAAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTANCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCaaaa] [+] EMBL BI795621 [ ACAT GTGCTCAGTGATC CATGAA TG AA CTGGGTTTTCTCGCCCGGAA GCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCT CA GCAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTGAA AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCAaaaaaaaaa ] [-] EMBL CF279401 [ TCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGATGCGTNCCCTATAAGGTAT GAAGGATTTGGGGATACCTCACATCACTTCCATGATCAAAAAAAACATATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA Aaaa ] [+] EMBL CB000768 [ TGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTa ] [+] EMBL BI811498 [ AGTCCAGGACGTATACAAAGTGAACAGTGATGTTCTGCCGTG ACAATACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCACAAAGATCCACTCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAAaaaaaaa ] consensusID : consensus_14130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGTTTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAAGGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGATCACTGAGCACATGTAGTATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGATAAGAGTTAGCTTCCTCAGCCACCTCTATTGTGAAAGCAAATCTATTCTCTTGAGATAACATCAGCTGGTTGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGAAANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAAGCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAAAATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATGGTAAGCNCNTGCGGCGTCCNCCNCNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT] [+] EMBL AA753319 [TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGTTTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAAGGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGATCACTGAGCACATGTAGTATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGATAAGAGTTAGCTTCCTCAGCCACCTCTATTGTGAAAGCAAATCTATTCTCTTGAGATAACATCAGCTGGTTGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGAAANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAAGCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAAAATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATGGTAAGCNCNTGCGGCGTCCNCCNCNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT] consensusID : consensus_14130#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AGACAAGCGGTCGGCGGCGAAGTGTGGCTTCTCCGGAAAATGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTTCTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTTG] [-] EMBL CA760923 [AGACAAGCGGTCGGCGGCGAAGTGTGGCTTCTCCGGAAAATGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTTCTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTTG] consensusID : consensus_14130#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ACGAGCTCGTGCCGAATTCGGCACGAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAATAGAGGTGGCTGAGGAAGCTAACTCTTATCTTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACCTATACTACATGTGCTCAGTGATCGCATGAATGAAGCTGGGTTTTCTCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAGAANGGCACTGAATAAACCTCATGCTCTACNGACCANAAAACCAAGATGGGACCTCTTTTCNGAACGGANCATCCTGCAGGCAGTTTTGCTGCTTCCTATACNGTTTGGGANGATTT] [+] EMBL BE228315 [ACGAGCTCGTGCCGAATTCGGCACGAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAATAGAGGTGGCTGAGGAAGCTAACTCTTATCTTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACCTATACTACATGTGCTCAGTGATCGCATGAATGAAGCTGGGTTTTCTCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAGAANGGCACTGAATAAACCTCATGCTCTACNGACCANAAAACCAAGATGGGACCTCTTTTCNGAACGGANCATCCTGCAGGCAGTTTTGCTGCTTCCTATACNGTTTGGGANGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14130#0 CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGG 60 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 CGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCAT 120 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCG 180 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 AGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACT 240 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 AAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGAC 300 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 GGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCA 360 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGA 420 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 GAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCT 480 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTA 540 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGG 600 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTA 660 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 AACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTC 720 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGT 780 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTAC 840 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCC 900 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 AAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTG 960 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 ------------------------------------------------------------ consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTA 1020 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 -----------------AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGG 43 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 AGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAA 1080 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 CGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAG 103 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 GGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTT 1140 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 CGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGA 163 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 TGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCA 1200 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 GCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGT-CAGCGGTCGGC-- 220 consensus_14130#4 ------------------------------------ACGAGCTCGTGCCGAATTCGGCAC 24 consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ATGAAGTGCCAAATTTTTATGGGTCAATTTCC-ATTTGGATTGGTACCAATGAA---GGA 1256 consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 GGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACA---AGT 277 consensus_14130#4 GAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACA---AGT 81 consensus_14130#2 ------TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGT 54 consensus_14130#0 TCACCAAATTTTTTT--TTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGC 1314 consensus_14130#3 -----AGACAAGCGG--TCGGCGGCGAAGTG----TGGCTTCTCCGGAAAATGAATAAGC 49 consensus_14130#1 TGGAACGTGTCCCTT--TCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGAT 335 consensus_14130#4 TGGAACGTGTCCCTT--TCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGAT 139 consensus_14130#2 TTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAA 114 * consensus_14130#0 AGAGCGGTGAGGCG---GCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGA-AGT 1370 consensus_14130#3 AGAGCGGTGAGGCG---GCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGA-AGT 105 consensus_14130#1 CATATGCTTGGACATCAACCAGCTGATGTTATCTGAAGAGAATAGATTTGCTTTCACAAT 395 consensus_14130#4 CATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAAT 199 consensus_14130#2 GGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGA-TCACTGAGCACATGTAGT 173 * * * * * * * * * * consensus_14130#0 AGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTT-GAACAGAAGTGCGTGAACTAGTTTG 1429 consensus_14130#3 AGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTG 165 consensus_14130#1 AGAGGTG-GCTGAGG---AAGCTAACTCTTATCTTGAAAAGAA---CAGGCATGAGTATG 448 consensus_14130#4 AGAGGTG-GCTGAGG---AAGCTAACTCTTATCTTGAAAAGAA---CAGGCATGAGTATG 252 consensus_14130#2 ATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGAT----AAGAGTTAGCTT- 228 * ** * * * * * * ** * ** * consensus_14130#0 GGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCC 1489 consensus_14130#3 GGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCC 225 consensus_14130#1 GACTGAAAAAACCTATACTACATG-TGCTCAGTGACCGCA-TGAATGAAGCTGGGTTTTC 506 consensus_14130#4 GACTGAAAAAACCTATACTACATG-TGCTCAGTGATCGCA-TGAATGAAGCTGGGTTTTC 310 consensus_14130#2 --CCTCAGCCACCTCTATTGTGAA-AGCAAATCTATTCTCTTGAGATAACATCAGCTGGT 285 * * * * * * * * * consensus_14130#0 AATTCC---AGCCTATGCCTTGC--TACCAAATTAAGCCTAGGCACTACCAGTGATTTGG 1544 consensus_14130#3 AATTCC---AGCCTATGCCTTGC--TACCAAATTAAGCCTAGGCACTACCAGTGATTTGG 280 consensus_14130#1 TCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATT--TTATTAAA 564 consensus_14130#4 TCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATT--TTATTAAA 368 consensus_14130#2 TGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGA 345 ** ** * *** * * * * * consensus_14130#0 TCACAATCCAAACTCTCAGTGGT----ACTGTTCTGATAACCAAAATAT--TGGTATGGC 1598 consensus_14130#3 TCACAATCCAAACTCTCAGTGGT----ACTGTTCTGATAACCAAAATAT--TGGTATGGC 334 consensus_14130#1 GAAGAAGGGCACTGAATAAACCT----CATGCTCTACAGACCAGAAAACA-CAAGATGGG 619 consensus_14130#4 GAAGAANGGCACTGAATAAACCT----CATGCTCTACNGACCANAAAAC--CAAGATGGG 422 consensus_14130#2 AANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAA 405 * ** * * consensus_14130#0 CCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCA-CGCTAT 1657 consensus_14130#3 CCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCA-CGCTAT 393 consensus_14130#1 ACCTCTTTT----CAGAACGGAGCAGTCCTGCAGGTAGTTTTG-CTGCGTACA-CTATAC 673 consensus_14130#4 ACCTCTTTT----CNGAACGGANCA-TCCTGCAGGCAGTTTTG-CTGCTTCC---TATAC 473 consensus_14130#2 GCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAA 465 * * * * * * * * * consensus_14130#0 TCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTT 1717 consensus_14130#3 TCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTT 453 consensus_14130#1 GGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCC 733 consensus_14130#4 NGTTTGGGANGATTT--------------------------------------------- 488 consensus_14130#2 AATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATG-GTAAGCNCNTGCGGCGTCCNCCN 524 * * ** consensus_14130#0 CTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTT-CACATCTTTTGTAAGGGACC 1776 consensus_14130#3 CTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTT-CACATCTTTTGTAAGGGACC 512 consensus_14130#1 AGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATC 793 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 CNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT--- 581 consensus_14130#0 TTTTCTTGAACTT----------------------------------------------- 1789 consensus_14130#3 TTTTCTTGAACTTG---------------------------------------------- 526 consensus_14130#1 CTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGACTATAAAAAG 853 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ------------------------------------------------------------ consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 TGAACAGTGAGTTCTGCCGTGAAAACCATGTCAATGGGGGTAGACAACCATTTTCTCATG 913 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ------------------------------------------------------------ consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 CATCAAGCTTTGATTAATCAAAAGATCCATCGGGTCCATGCTACTGTTGTCTTCCTACTG 973 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ------------------------------------------------------------ consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 TACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAG 1033 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ------------------------------------------------------------ consensus_14130#3 ------------------------------------------------------------ consensus_14130#1 GGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCT 1093 consensus_14130#4 ------------------------------------------------------------ consensus_14130#2 ------------------------------------------------------------ consensus_14130#0 ------------------------------------------------ consensus_14130#3 ------------------------------------------------ consensus_14130#1 AACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCTGCA 1141 consensus_14130#4 ------------------------------------------------ consensus_14130#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||