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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1789 fasta sequence
[CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACTAAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGACGGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCATTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGAGAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCTTTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTATGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGGATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTAAACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTCATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGTTAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTACATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCCAAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTGTTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTAAGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAAGGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTTTGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCAATGAAGTGCCAAATTTTTATGGGTCAATTTCCATTTGGATTGGTACCAATGAAGGATCACCAAATTTTTTTTTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTGAACAGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTTCTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTT]
[+] EMBL AK103903 [CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACTAAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGACGGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCATTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGAGAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCTTTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTATGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGGATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTAAACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTCATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGTTAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTACATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCCAAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTGTTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTAAGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAAGGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTTTGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCAATGAAGTGCCAAATTTTTATGGGTCAATTTCCATTTGGATTGGTACCAATGAAGGATCACCAAATTTTTTTTTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTGAACAGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTTCTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTT]
consensusID : consensus_14130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1141 fasta sequence
[AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG-TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA-TCAACCAGC-TGATG-TTATC-TGAAGAGAA-TAGATTTGCTTT-CACAA-TAGAGGTGGCTGAGGAAGC-TAACTC-TTATC-TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC-TATACTACAT-GTGCTCAGTGACCGCATGAA-TG-AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG-AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC-TATAAAAAGTGAACAGTGA-GTTCTGCCGTG-A-AA-ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA-AAAGATCCA-TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCTGCA]
[+] EMBL AU101217 [AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGG GGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGGTTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATTCAACCAGCTTGATGTTTATCTTGAAGAGAATTAGATTTGCTTTCCACAATTAGAGGTGGCTGAGGAAGCTTAACTCTTTATCTTTGAAAA ]
[+] EMBL AK102719 [ AGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTGCAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAG AAAGTCAAGATATTATACTCCTGC ]
[+] EMBL CF279400 [ AGCCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAANTG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGC ]
[+] EMBL CF332477 [ GGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGC ]
[+] EMBL AU181025 [ CCATATCCATGAGAGCGCAGAGAAAGCAGAGCGG TGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACA TCAACCAGC TGATG TTATC TGAAGAGAA TAGATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC T ]
[-] EMBL CF332478 [ GATTTGCTTT CACAA TAGAGGTGGCTGAGGAAGC TAACTC TTATC TTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACC TATACTACAT GTGCTCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGCTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCAaaaaaa ]
[+] EMBL AU101218 [ TGGAAAAACCTTATACTACATGGGGCTCAGTGACCGCATGAA TGAAAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTANCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCaaaa]
[+] EMBL BI795621 [ ACAT GTGCTCAGTGATC CATGAA TG AA CTGGGTTTTCTCGCCCGGAA GCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCT CA GCAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTGAA AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCAaaaaaaaaa ]
[-] EMBL CF279401 [ TCAGTGACCGCATGAA TG AAGCTGGGTTTTCTCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAG AAGAAGGGCACTGAATAAACCTCATGCTCTACAGACCAGAAAACACAAGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGATGCGTNCCCTATAAGGTAT GAAGGATTTGGGGATACCTCACATCACTTCCATGATCAAAAAAAACATATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA Aaaa ]
[+] EMBL CB000768 [ TGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGAC TATAAAAAGTGAACAGTGA GTTCTGCCGTG A AA ACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCA AAAGATCCA TCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTa ]
[+] EMBL BI811498 [ AGTCCAGGACGTATACAAAGTGAACAGTGATGTTCTGCCGTG ACAATACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATCACAAAGATCCACTCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCTAAaaaaaaa ]
consensusID : consensus_14130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGTTTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAAGGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGATCACTGAGCACATGTAGTATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGATAAGAGTTAGCTTCCTCAGCCACCTCTATTGTGAAAGCAAATCTATTCTCTTGAGATAACATCAGCTGGTTGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGAAANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAAGCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAAAATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATGGTAAGCNCNTGCGGCGTCCNCCNCNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT]
[+] EMBL AA753319 [TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGTTTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAAGGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGATCACTGAGCACATGTAGTATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGATAAGAGTTAGCTTCCTCAGCCACCTCTATTGTGAAAGCAAATCTATTCTCTTGAGATAACATCAGCTGGTTGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGAAANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAAGCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAAAATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATGGTAAGCNCNTGCGGCGTCCNCCNCNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT]
consensusID : consensus_14130#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[AGACAAGCGGTCGGCGGCGAAGTGTGGCTTCTCCGGAAAATGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTTCTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTTG]
[-] EMBL CA760923 [AGACAAGCGGTCGGCGGCGAAGTGTGGCTTCTCCGGAAAATGAATAAGCAGAGCGGTGAGGCGGCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGAAGTAGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTGGGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCCAATTCCAGCCTATGCCTTGCTACCAAATTAAGCCTAGGCACTACCAGTGATTTGGTCACAATCCAAACTCTCAGTGGTACTGTTCTGATAACCAAAATATTGGTATGGCCCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCACGCTATTCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTTCTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTTCACATCTTTTGTAAGGGACCTTTTCTTGAACTTG]
consensusID : consensus_14130#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[ACGAGCTCGTGCCGAATTCGGCACGAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAATAGAGGTGGCTGAGGAAGCTAACTCTTATCTTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACCTATACTACATGTGCTCAGTGATCGCATGAATGAAGCTGGGTTTTCTCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAGAANGGCACTGAATAAACCTCATGCTCTACNGACCANAAAACCAAGATGGGACCTCTTTTCNGAACGGANCATCCTGCAGGCAGTTTTGCTGCTTCCTATACNGTTTGGGANGATTT]
[+] EMBL BE228315 [ACGAGCTCGTGCCGAATTCGGCACGAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACAAGTTGGAACGTGTCCCTTTCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGATCATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAATAGAGGTGGCTGAGGAAGCTAACTCTTATCTTGAAAAGAACAGGCATGAGTATGGACTGAAAAAACCTATACTACATGTGCTCAGTGATCGCATGAATGAAGCTGGGTTTTCTCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATTTTATTAAAGAAGAANGGCACTGAATAAACCTCATGCTCTACNGACCANAAAACCAAGATGGGACCTCTTTTCNGAACGGANCATCCTGCAGGCAGTTTTGCTGCTTCCTATACNGTTTGGGANGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14130#0 CCTCGAAGAGATGGCTATGGCAATGGCGGCTTCGCTCGCGGCGCACCACCACCTCGCCGG 60
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 CGGCGGCCTCCTCCCCACGCCACGAGCGAGCGGGAGGAACGGCCGCAGCGGCATCACCAT 120
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ATCCATGAGAGCGCAGAGCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCG 180
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 AGTCAGCGGTCGGCGGCGAGTGTGGCGTCGCCGGAAACTGGTATGCTCTCTGGCCGAACT 240
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 AAGGGAGTAGGTCTCCTCCTATATCTCCGCGTGGTTGATTGTTTTGGACGGAACTAGGAC 300
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 GGCATGGACGACGTTCTCGCTGAATAATCTGCGAGCCTCCGTTTTGGAATGCGCATGCCA 360
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TTTGCCTTTCTTTTTACATGAGATTGGGAAGGTAGAGCGGGGTCAGTTGTGTTCAGGAGA 420
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 GAGAAGCGTCGGATGTGTCCATTACTCCATTATCATGTGGTATCAAACCTCGGAAACCCT 480
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TTTTTGAGTTGCGAGGATTATGTGATGCGATATTTCATTTGCACCTGTTTTGGTTCATTA 540
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TGGAGCTCTTGCTTGCATAGATTTTCGTTTAAAGGAATCCTGAGGCTTCATGGGGGTGGG 600
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ATAGATGAAAGCATCATTTTTTTTTTGGCCAAATAAGGCAATTATTTTAGGTTGTTTCTA 660
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 AACAATAAGTCACAAATTGTTGGTACAAGAAACTTCCTTTGCCCTTGTAGTGTTTTTCTC 720
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ATGTGATTCCATGACATTTGCTATTCAGTATTATGCTCAAAATATGAAGTCACAGATTGT 780
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TAGTATGATGCAGCATGCTCTGGTTGTCCTTCATCTTTGTAGTGTGGCTCTTGTGGTTAC 840
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ATTGGTGGCTGCTAGCAGTGTCAGAGCATGAGACAAACACAAAAAAGTATTCAATTATCC 900
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 AAATCATTTTAAAGTTTTAAATAAACATCAACTGATAATTAGAATTGGACATTGTTGTTG 960
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 ------------------------------------------------------------
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TTCATCGTTAGTTCACATATATCATATCAGAGTAACTGTACGTATGTATTAACTCTATTA 1020
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 -----------------AGAGGGGCGCACTTAAGCCTCGAAGAGATGGCTATGGCAATGG 43
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 AGTATTCCAAAACCACTGTAAACACAGTACTAGCATAAAAGGGGAGCATGAAAAATTGAA 1080
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 CGGCTTCGCTCGCGGCGCACCACCACCTCGCCGGCGGCGGCCTCCTCCCCACGCCACGAG 103
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 GGGCTTATTTGGTTTGGTACCCTACCAAAATTTTAGTAGTGCCAAAACCTAGGCAAGTTT 1140
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 CGAGCGGGAGGAACGGCCGCAGCGGCATCACCATATCCATGAGAGCGCAGAGAAAGCAGA 163
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 TGGCACTACCAAGATTTTGGTAGGGTAGCACAGTAAATATGAGTGTTTGGATTAGTGCCA 1200
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 GCGGTGACTCTGGGAGTGGGAAGGGAGACGGCGGAGACGGGCGAGT-CAGCGGTCGGC-- 220
consensus_14130#4 ------------------------------------ACGAGCTCGTGCCGAATTCGGCAC 24
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ATGAAGTGCCAAATTTTTATGGGTCAATTTCC-ATTTGGATTGGTACCAATGAA---GGA 1256
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 GGCGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACA---AGT 277
consensus_14130#4 GAGGAGTGTGGCGTCGCCGGAAACTGACCAAAGAGGATGACATGTTGCGGTACA---AGT 81
consensus_14130#2 ------TTTTTTTTTTTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGT 54
consensus_14130#0 TCACCAAATTTTTTT--TTTGTGCTGTAATAGCTTTGGTACTATTTGCTGCAGAATAAGC 1314
consensus_14130#3 -----AGACAAGCGG--TCGGCGGCGAAGTG----TGGCTTCTCCGGAAAATGAATAAGC 49
consensus_14130#1 TGGAACGTGTCCCTT--TCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGAT 335
consensus_14130#4 TGGAACGTGTCCCTT--TCTTAGAAGAGAAAGTGAGAAAAGTTAGGGAAAATGGGAAGAT 139
consensus_14130#2 TTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAA 114
*
consensus_14130#0 AGAGCGGTGAGGCG---GCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGA-AGT 1370
consensus_14130#3 AGAGCGGTGAGGCG---GCCAGCCGAGGAGACGAGTAGTGGCTGGGTATTTATTGA-AGT 105
consensus_14130#1 CATATGCTTGGACATCAACCAGCTGATGTTATCTGAAGAGAATAGATTTGCTTTCACAAT 395
consensus_14130#4 CATATGCTTGGACATCAACCAGCTGATGTTATCTCAAGAGAATAGATTTGCTTTCACAAT 199
consensus_14130#2 GGTAGCCTTCCGGGCGAGAAAACCCAGCTTCATTCATGCGA-TCACTGAGCACATGTAGT 173
* * * * * * * * * *
consensus_14130#0 AGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTT-GAACAGAAGTGCGTGAACTAGTTTG 1429
consensus_14130#3 AGAGAAAAGATGAAGCCCTAGCTTTTTTTTTTTTTGAACGGAAGTGCGTGAACTAGTTTG 165
consensus_14130#1 AGAGGTG-GCTGAGG---AAGCTAACTCTTATCTTGAAAAGAA---CAGGCATGAGTATG 448
consensus_14130#4 AGAGGTG-GCTGAGG---AAGCTAACTCTTATCTTGAAAAGAA---CAGGCATGAGTATG 252
consensus_14130#2 ATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGAT----AAGAGTTAGCTT- 228
* ** * * * * * * ** * ** *
consensus_14130#0 GGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCGGCGGGTGACGGATGGCTGCC 1489
consensus_14130#3 GGCTGAGCCAAGTTGTGTAGCCTGCTTCTGGGCGCTTCCAGCGGGTGACGGATGGCTGCC 225
consensus_14130#1 GACTGAAAAAACCTATACTACATG-TGCTCAGTGACCGCA-TGAATGAAGCTGGGTTTTC 506
consensus_14130#4 GACTGAAAAAACCTATACTACATG-TGCTCAGTGATCGCA-TGAATGAAGCTGGGTTTTC 310
consensus_14130#2 --CCTCAGCCACCTCTATTGTGAA-AGCAAATCTATTCTCTTGAGATAACATCAGCTGGT 285
* * * * * * * * *
consensus_14130#0 AATTCC---AGCCTATGCCTTGC--TACCAAATTAAGCCTAGGCACTACCAGTGATTTGG 1544
consensus_14130#3 AATTCC---AGCCTATGCCTTGC--TACCAAATTAAGCCTAGGCACTACCAGTGATTTGG 280
consensus_14130#1 TCGGCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATT--TTATTAAA 564
consensus_14130#4 TCGCCCGGAAGGCTACCTTTATCCTTATCCTATTAAGCCTGGTCCTTATT--TTATTAAA 368
consensus_14130#2 TGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGA 345
** ** * *** * * * * *
consensus_14130#0 TCACAATCCAAACTCTCAGTGGT----ACTGTTCTGATAACCAAAATAT--TGGTATGGC 1598
consensus_14130#3 TCACAATCCAAACTCTCAGTGGT----ACTGTTCTGATAACCAAAATAT--TGGTATGGC 334
consensus_14130#1 GAAGAAGGGCACTGAATAAACCT----CATGCTCTACAGACCAGAAAACA-CAAGATGGG 619
consensus_14130#4 GAAGAANGGCACTGAATAAACCT----CATGCTCTACNGACCANAAAAC--CAAGATGGG 422
consensus_14130#2 AANGGACACGTTCCACTTGTACCGCAACATGTCATCCTCTTTGGTCAGTTTCCNGGNGAA 405
* ** * *
consensus_14130#0 CCAGTTTTGATAGCAAACCAAAACGGCCCGAAAAGTAGCGCTGATTGAAGGCA-CGCTAT 1657
consensus_14130#3 CCAGTTTTGGTAGCAAACCAAAACGGCCTGAAAAGTAGCGCTGATTGAAGGCA-CGCTAT 393
consensus_14130#1 ACCTCTTTT----CAGAACGGAGCAGTCCTGCAGGTAGTTTTG-CTGCGTACA-CTATAC 673
consensus_14130#4 ACCTCTTTT----CNGAACGGANCA-TCCTGCAGGCAGTTTTG-CTGCTTCC---TATAC 473
consensus_14130#2 GCCACNCTCGCCGCCGAACGGCTGAATCCCCCGTCTTCGGCCGTTCCTTTCCAATCCCAA 465
* * * * * * * * *
consensus_14130#0 TCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGGTTGCTACCTT 1717
consensus_14130#3 TCTTTTGGTCAGATTATTAAAATCCACAATTATGTTTTTGTAACTATAGCTTGCTACCTT 453
consensus_14130#1 GGTTTGGGAGGATTTGGGGATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCC 733
consensus_14130#4 NGTTTGGGANGATTT--------------------------------------------- 488
consensus_14130#2 AATCACGCTCTGNTTTCTCTTGGCNCTCATGAAATG-GTAAGCNCNTGCGGCGTCCNCCN 524
* * **
consensus_14130#0 CTATGTGTATTAGCAAGCTATAGGCAAGACAGACATCTT-CACATCTTTTGTAAGGGACC 1776
consensus_14130#3 CTATGTGTATTAGCAAGCAATAGGCAAGACAGACATCTT-CACATCTTTTGTAAGGGACC 512
consensus_14130#1 AGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAATGTACAGTAAGGGCAGTGGATC 793
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 CNCCTCCTGGCTTTGGAAGAAGCCCCCCCGGGAAGTGTTGTCCCCCAACAACCCCNT--- 581
consensus_14130#0 TTTTCTTGAACTT----------------------------------------------- 1789
consensus_14130#3 TTTTCTTGAACTTG---------------------------------------------- 526
consensus_14130#1 CTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGACTATAAAAAG 853
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ------------------------------------------------------------
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 TGAACAGTGAGTTCTGCCGTGAAAACCATGTCAATGGGGGTAGACAACCATTTTCTCATG 913
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ------------------------------------------------------------
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 CATCAAGCTTTGATTAATCAAAAGATCCATCGGGTCCATGCTACTGTTGTCTTCCTACTG 973
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ------------------------------------------------------------
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 TACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCTACCTAGTACAGTAGTACCCAG 1033
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ------------------------------------------------------------
consensus_14130#3 ------------------------------------------------------------
consensus_14130#1 GGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCCT 1093
consensus_14130#4 ------------------------------------------------------------
consensus_14130#2 ------------------------------------------------------------
consensus_14130#0 ------------------------------------------------
consensus_14130#3 ------------------------------------------------
consensus_14130#1 AACTTTTGAGAAGCCAAGCTAGTAAAGTCAAGATATTATACTCCTGCA 1141
consensus_14130#4 ------------------------------------------------
consensus_14130#2 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||