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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 560 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA-TCCA-TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG-ACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTCGAGCTCCTT]
[-] EMBL CF309077 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGTGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTGACAATAAAACCGGCCGGAGAGG ]
[+] EMBL CF276114 [ TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTACCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGATA ]
[+] EMBL CF305510 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGGAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAACCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTC ]
[+] EMBL CF302137 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGCCGATGAT ]
[+] EMBL CF337692 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGAACGTTGTCAAAGCCGATGA ]
[+] EMBL CF302610 [ TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTTCTTATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCC ]
[+] EMBL CF302552 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCATTTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGC ]
[+] EMBL CF305404 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTT]
[+] EMBL CF298450 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGAT ]
[+] EMBL CF298528 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGAAGAAACTAATCAACTG ]
[+] EMBL CF300312 [ TTTTTTTTTTGTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCATTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGC ]
[+] EMBL CF302026 [ TTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCACTCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGA ]
[+] EMBL CF308579 [ TTTTTTTTTTTTTTTTTTTTT GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGA ]
[+] EMBL CF280621 [ TTTTTT GAGACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAGTTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATATAGCCTACTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGGATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTT ]
consensusID : consensus_14134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA]
[+] EMBL CF301595 [TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14134#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_14134#1 ------------------------------------------------------------
consensus_14134#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCATCCATTTTTTTTATTG 120
consensus_14134#1 ------------------------------------------------------------
consensus_14134#0 GCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTT 180
consensus_14134#1 ------------------------------------------------------------
consensus_14134#0 GTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAA 240
consensus_14134#1 TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAG 60
**** * * *********************************************
consensus_14134#0 AGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 300
consensus_14134#1 AGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 120
********************* * ************************************
consensus_14134#0 CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCC 360
consensus_14134#1 CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCC 180
********************************************************* **
consensus_14134#0 AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 420
consensus_14134#1 AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 240
************************************************************
consensus_14134#0 GCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAAC 480
consensus_14134#1 GCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAAC 300
***** ************************************** ** ** *********
consensus_14134#0 TGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTT 540
consensus_14134#1 TGCACCTGCCTGACGTTGTCAAACCCGATGATA--------------------------- 333
*********************** *********
consensus_14134#0 TTGGCCTCCTCGAGCTCCTT 560
consensus_14134#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||