These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 560 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA-TCCA-TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG-ACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTCGAGCTCCTT] [-] EMBL CF309077 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGTGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTGACAATAAAACCGGCCGGAGAGG ] [+] EMBL CF276114 [ TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTACCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGATA ] [+] EMBL CF305510 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGGAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAACCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTC ] [+] EMBL CF302137 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGCCGATGAT ] [+] EMBL CF337692 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGAACGTTGTCAAAGCCGATGA ] [+] EMBL CF302610 [ TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTTCTTATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCC ] [+] EMBL CF302552 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCATTTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGC ] [+] EMBL CF305404 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTT] [+] EMBL CF298450 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGAT ] [+] EMBL CF298528 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGAAGAAACTAATCAACTG ] [+] EMBL CF300312 [ TTTTTTTTTTGTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCATTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGC ] [+] EMBL CF302026 [ TTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCACTCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGA ] [+] EMBL CF308579 [ TTTTTTTTTTTTTTTTTTTTT GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGA ] [+] EMBL CF280621 [ TTTTTT GAGACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAGTTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATATAGCCTACTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGGATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTT ] consensusID : consensus_14134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA] [+] EMBL CF301595 [TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14134#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_14134#1 ------------------------------------------------------------ consensus_14134#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCATCCATTTTTTTTATTG 120 consensus_14134#1 ------------------------------------------------------------ consensus_14134#0 GCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTT 180 consensus_14134#1 ------------------------------------------------------------ consensus_14134#0 GTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAA 240 consensus_14134#1 TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAG 60 **** * * ********************************************* consensus_14134#0 AGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 300 consensus_14134#1 AGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 120 ********************* * ************************************ consensus_14134#0 CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCC 360 consensus_14134#1 CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCC 180 ********************************************************* ** consensus_14134#0 AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 420 consensus_14134#1 AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 240 ************************************************************ consensus_14134#0 GCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAAC 480 consensus_14134#1 GCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAAC 300 ***** ************************************** ** ** ********* consensus_14134#0 TGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTT 540 consensus_14134#1 TGCACCTGCCTGACGTTGTCAAACCCGATGATA--------------------------- 333 *********************** ********* consensus_14134#0 TTGGCCTCCTCGAGCTCCTT 560 consensus_14134#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||