These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2195 fasta sequence [CCCACTTCTCAACCTCGCCTCGCCATCTCCGCGCCGCGGCCCAGATCCCTCCGGCGAGCGCCGCCGCCGCCACCGCCTCCGCCATGGACCGCCTCCGCGCGGGGAGCCCCGTCTACGGGCGGCAGCGGAGCGGCAGCAGCACGGGCTCCTCCTCCCCGGGCGGCGTCTCCCCGTCCCACCACCGCTCCTCCTCCACCTCCTCCGCCGCCTCCGCCGCCGCGGGGCTGGGCGGCGGCGTCTCCAACGTGCGCCGCACGCAGAACGTCGCGGCGCGGGCGGCCGCCGCGAGGCTGGCCCAGGTCATGGCGTCACAGAGCGCCGCGGCCGCCGCGGGCCGCGACGACGACGACGACGACGACGACTACGCCAATGACCACCCGCCCGCCCCTCCCCCCGCGAGGTTCGGCTCCGCGCGCCCCGCCGCGGCGCACGGCAGCAACGGCGTCTCGTTGCTCGGCCGCACCGCGAGATCTCCCTCCCCTGCGTTAGGTAGGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACATCAGCTGGGAGGCCTGCCGTTGCTTCACGGCCGACCACCACGGTGGTTCCACCGATCAAAACCAGCACGACATTGCGGACACCATCGCCTATTCCACCTGTGGCTGTGGAGCCTCCAGTGGACCGCAGTCGGCAGAAAAGGTTTGATACAGGGCATCTCAACTCCAGAGAATCAACACCAAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTAGAAAAGCTACGACTTGCTGAAGAAAGATGTGAAGAAGCAGAAGCTAGAGCCAAGGAGCTTGAGAAACAGGTAGCTGCCCTTGGGGAAGGGGTATCATTAGAAGCTCGCCTCTTGAGCAGGAAAGAAGCTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCA--ATATAGAGAGCATGCTCTCAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAGGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAG-AAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAATCATAAGTGATGATTCTTTCTG] [+] EMBL AK120714 [CCCACTTCTCAACCTCGCCTCGCCATCTCCGCGCCGCGGCCCAGATCCCTCCGGCGAGCGCCGCCGCCGCCACCGCCTCCGCCATGGACCGCCTCCGCGCGGGGAGCCCCGTCTACGGGCGGCAGCGGAGCGGCAGCAGCACGGGCTCCTCCTCCCCGGGCGGCGTCTCCCCGTCCCACCACCGCTCCTCCTCCACCTCCTCCGCCGCCTCCGCCGCCGCGGGGCTGGGCGGCGGCGTCTCCAACGTGCGCCGCACGCAGAACGTCGCGGCGCGGGCGGCCGCCGCGAGGCTGGCCCAGGTCATGGCGTCACAGAGCGCCGCGGCCGCCGCGGGCCGCGACGACGACGACGACGACGACGACTACGCCAATGACCACCCGCCCGCCCCTCCCCCCGCGAGGTTCGGCTCCGCGCGCCCCGCCGCGGCGCACGGCAGCAACGGCGTCTCGTTGCTCGGCCGCACCGCGAGATCTCCCTCCCCTGCGTTAGGTAGGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACATCAGCTGGGAGGCCTGCCGTTGCTTCACGGCCGACCACCACGGTGGTTCCACCGATCAAAACCAGCACGACATTGCGGACACCATCGCCTATTCCACCTGTGGCTGTGGAGCCTCCAGTGGACCGCAGTCGGCAGAAAAGGTTTGATACAGGGCATCTCAACTCCAGAGAATCAACACCAAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTAGAAAAGCTACGACTTGCTGAAGAAAGATGTGAAGAAGCAGAAGCTAGAGCCAAGGAGCTTGAGAAACAGGTAGCTGCCCTTGGGGAAGGGGTATCATTAGAAGCTCGCCTCTTGAGCAGGAAAGAAGCTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCA ATATAGAGAGCATGCTCTCAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAGGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAG AAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAATCATAAGTGATGATTCTTTCTG] [+] EMBL CB663866 [ GCCTCGCCATCTCCGCGCCGCGGCCCAGATCCCTCCGGCGAGCGCCGCCGCCGCCACCGCCTCCGCCATGGACCGCCTCCGCGCGGGGAGCCCCGTCTACGGGCGGCAGCGGAGCGGCAGCAGCACGGGCTCCTCCTCCCCGGGCGGCGTCTCCCCGTCCCACCACCGCTCCTCCTCCACCTCCTCCGCCGCCTCCGCCGCCGCGGGGCTGGGCGGCGGCGTCTCCAACGTGCGCCGCACGCAGAACGTCGCGGCGCGGGCGGCCGCCGCGAGGCTGGCCCAGGTCATGGCGTCACAGAGCGCCGCGGCCGCCGCGGGCCGCGACGACGACGACGACGACGACGACTACGCCAATGACCACCCGCCCGCCCCTCCCCCCGCGAGGTTCGGCTCCGCGCGCCCCGCCGCGGCGCACGGCAGCAACGGCGTCTCGTTGCTCGGCCGCACCGCGAGATCTCCCTCCCCTGCGTTAGGTACGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACA ] [+] EMBL CB631315 [ ggGCGCCGCGGCCGCCGCGGGCCGCGACGACGACGACGACGACGACGACTACGCCAATGACCACCCGCCCGCCCCTCCCCCCGCGAGGTTCGGCTCCGCGCGCCCCGCCGCGGCGCACGGCAGCAACGGCGTCTCGTTGCTCGGCCGCACCGCGAGATCTCCCTCCCCTGCGTTAGGTAGGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACATCAGCTGGGAGGCCTGCCGTTGCTTCACGGCCGACCACCACGGTGGTTCCACCGATCAAAACCAGCACGACATTGCGGACACCATCGCCTATTCCACCTGTGGCTGTGGAGCCTCCAGTGGACCGCAGTCGGCAGAAAAGGTTTGATACAGGGCATCTCAACTCCAGAGAATCAACACCAAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTAGAAAAGCTACGACTTGCTGAAGAAAGATGTGAAGAAGCAGAAGCTAGAGCCAAGGAGCTTGAGAAACAGGTAGCTGCCCTTGGGGAAGGGGTATCATTAGAAGCTCGCCTCTTGAGCAGGAAAGAAGCTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGC ] [+] EMBL OSS4078A [ GTTGCTCGGCCGCACCGCGAGATCTCCCTCCCCTGCGTTAGGTAGGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACATCAGCTGGGAGGCCTGCCGTTGCTTCACGGCCGACCACCACGGTGGTTCCACCGATCAAAACCAGCACGACATTGCGGACACCATCGCCTATTCCACCTGTGGCTGTGGAGCCTCCAGTGGACCGCAGTCGGCAGAAAAGGTTTGATACAGGGCATCTCAACTCCAG ] [+] EMBL CA764225 [ GAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCGTGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGCAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATATAGAGAGCATGCTCTCAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAGGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAGAAAGATGNTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCC ACTTCTCATGATGCTATAGATGGGGAGCGGGGTCTAACAGAGCTCAAGAAACTGGGCATAGAGCAGCAACTGNGGGAAGGATCACGNGCAGANTTCGATGAANATTCATCGGCAATTGANAATACCTAGGCNCATCTCAAGGTTGGTTATGGGACATG ] [-] EMBL CB663867 [ TGTAATGGGAGAAGGCA ATATAGAGAGCATGCTCTCAGTGAAAATGGGGCTTAGAGAGCTTTCATCATTGAAGGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAG AAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCT ] [-] EMBL CB631314 [ GGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACNTAGTATAGTTCGGCAATTCACATCAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAG AAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCCAGAGAGATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGA ] [-] EMBL CB641876 [ TTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAG AAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAAAAGACAGAGAGGAAGCTATGtt ] consensusID : consensus_14137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTCTCAGTTGAAATGGGGCTTAAAGAGCTTTCATCATTGAAGTGGAAGATGCTGTGTGGTTCACTTGGCAACACCGGAACTATNTAGTCGGAATTACATAGATTTAATACTGGGACCTAATCTTGAGCNTGACTACATAAAGCAAAATTANTTACAGCTGGTTTCTTGAAAACTACTATGATNGAAATGTAACGTTATTG] [+] EMBL BP184393 [CTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTAAAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTCTCAGTTGAAATGGGGCTTAAAGAGCTTTCATCATTGAAGTGGAAGATGCTGTGTGGTTCACTTGGCAACACCGGAACTATNTAGTCGGAATTACATAGATTTAATACTGGGACCTAATCTTGAGCNTGACTACATAAAGCAAAATTANTTACAGCTGGTTTCTTGAAAACTACTATGATNGAAATGTAACGTTATTG] consensusID : consensus_14137#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 603 fasta sequence [GAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGAT-ATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTC-ACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAA--AAAAAAAAAAAAAAAAA] [+] EMBL BP184394 [GAGCTAAAACTCATGGCATTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGAT ATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTC ACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAA AAAAAAAAAAAAA ] [-] EMBL CB677865 [ TTCAGTTCTGGATAGGTCGCAAGGCAGTAGCCCCAACTTGTCATGATGCTATGGATGTGGAGCGAGGTATAACAGAGCTCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCCCGTGCAGATATGGATGAAGATTCATCGGCAATTGAGAATCACTAGGCACATTTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTGGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCTTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGATCGATCATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATAT ] [+] EMBL AU174313 [ GATATCGATGAAGATTCATCGGCAATTGAGAATCNCTAGGCACATNTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATNTTCGGGTGTTGAGCAATGGGCAGTNTTCGGGTGTTGAGCGAT ATTATGGGCTTGTCCANAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATNTC ACTTCATCCAATTTGTGAATTTGTGATTACNCCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCNAATCAAAAAAAAAAAAAAAAA] [-] EMBL OS38023 [ TGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAACACTTCTGTGAAATGTGTAATTGGTCTGTCCTGGCAATATGATGGTGATCTCAACTTCATC ] consensusID : consensus_14137#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GCCGAATTCGGCACGAGCTCAACTCCAGAGANTCAACACCNTAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTANAAAAGCTACGACTTGCTGAAGAAAGATGTGAANAAGCNNAAGCTAGAGCCAAGGAGCTTGAGAAACNGGTNNCTGCCCTTGGGGAAGGGGTNTCNTTAGAAGCTCGCCTCTTGAGCAGGAAAGAACTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCNAGGGANTCNNNAGATGGTAANGATGAAGAACAANATGATGTCTTTTGCNATAATGATTCNA] [+] EMBL BE228903 [GCCGAATTCGGCACGAGCTCAACTCCAGAGANTCAACACCNTAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTANAAAAGCTACGACTTGCTGAAGAAAGATGTGAANAAGCNNAAGCTAGAGCCAAGGAGCTTGAGAAACNGGTNNCTGCCCTTGGGGAAGGGGTNTCNTTAGAAGCTCGCCTCTTGAGCAGGAAAGAACTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCNAGGGANTCNNNAGATGGTAANGATGAAGAACAANATGATGTCTTTTGCNATAATGATTCNA] consensusID : consensus_14137#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [AGGGTTGTTTATGGTACATGAGTTATTCCCATTTTGGAGAATGGAAATGCGTTTTTCGCGGCTGGTCTTGGGCCCATTGCCCATCNATTGGATCCCTGAATGGNGCTGCCAATTTTCGGGGGTTGACACCATGGCGCAGATCTTCGGGTGTTGAGCGATATTATGGGCTNGGTCCACGAGATATTGTGTAGTGGCACTGTGG] [+] EMBL BI806414 [AGGGTTGTTTATGGTACATGAGTTATTCCCATTTTGGAGAATGGAAATGCGTTTTTCGCGGCTGGTCTTGGGCCCATTGCCCATCNATTGGATCCCTGAATGGNGCTGCCAATTTTCGGGGGTTGACACCATGGCGCAGATCTTCGGGTGTTGAGCGATATTATGGGCTNGGTCCACGAGATATTGTGTAGTGGCACTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CCCACTTCTCAACCTCGCCTCGCCATCTCCGCGCCGCGGCCCAGATCCCTCCGGCGAGCG 60 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CCGCCGCCGCCACCGCCTCCGCCATGGACCGCCTCCGCGCGGGGAGCCCCGTCTACGGGC 120 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 GGCAGCGGAGCGGCAGCAGCACGGGCTCCTCCTCCCCGGGCGGCGTCTCCCCGTCCCACC 180 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 ACCGCTCCTCCTCCACCTCCTCCGCCGCCTCCGCCGCCGCGGGGCTGGGCGGCGGCGTCT 240 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CCAACGTGCGCCGCACGCAGAACGTCGCGGCGCGGGCGGCCGCCGCGAGGCTGGCCCAGG 300 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 TCATGGCGTCACAGAGCGCCGCGGCCGCCGCGGGCCGCGACGACGACGACGACGACGACG 360 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 ACTACGCCAATGACCACCCGCCCGCCCCTCCCCCCGCGAGGTTCGGCTCCGCGCGCCCCG 420 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CCGCGGCGCACGGCAGCAACGGCGTCTCGTTGCTCGGCCGCACCGCGAGATCTCCCTCCC 480 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CTGCGTTAGGTAGGAACATTGTAGAGCCACCTCCTACTGTCCGCTCAACATCAGCTGGGA 540 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 GGCCTGCCGTTGCTTCACGGCCGACCACCACGGTGGTTCCACCGATCAAAACCAGCACGA 600 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CATTGCGGACACCATCGCCTATTCCACCTGTGGCTGTGGAGCCTCCAGTGGACCGCAGTC 660 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 GGCAGAAAAGGTTTGATACAGGGCATCTCAACTCCAGAGAATCAACACCAAAAAGGGAGG 720 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CGTCTGCACTTCAAGATGAGCTTGATATACTACAAGAGGAGAATGAGAGTGTTCTAGAAA 780 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AGCTACGACTTGCTGAAGAAAGATGTGAAGAAGCAGAAGCTAGAGCCAAGGAGCTTGAGA 840 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AACAGGTAGCTGCCCTTGGGGAAGGGGTATCATTAGAAGCTCGCCTCTTGAGCAGGAAAG 900 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ---CTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTA 57 consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AAGCTGCCCTTAAACAGAGGGAGGCTGCACTGAAGGCTGCAAGGGAATCAAAAGATGGTA 960 consensus_14137#2 ------------------------------------------GAGCTAAAACTCATGGCA 18 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 AAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAA 117 consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AAGATGGGGAAGTGACAACACTAAAGCATGAACTGGATTGTGCCAAAGAAGAGGTTGTAA 1020 consensus_14137#2 TTGAGGAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCC 78 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 CAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTC 177 consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTC 1080 consensus_14137#2 CAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCA 138 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 AGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTT 237 consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AGAGAATGATCTTAACCCAAGAGGAAATGGAAGAGGTGGTCCTTAAAAGGTGCTGGCTTT 1140 consensus_14137#2 TAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTG 198 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 CACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGA----TTGCGGTATCA 293 consensus_14137#3 ---------------------------GCCGAATTCGGCACGAGC----T--CAACTCCA 27 consensus_14137#0 CACGTTATTGGGGCTTAGCGGTTCAATACGGAGTTTATCCCGAGA----TTGCGGTATCA 1196 consensus_14137#2 AGAATCACTAGGC----ACATCTCAAGGTTGTTTATGGTACATGA-TTATTCCAATTTTG 253 consensus_14137#4 ------------------------AGGGTTGTTTATGGTACATGAGTTATTCCCATTTTG 36 * * * * * * consensus_14137#1 AAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTT-GTTCTCTCTGCTGG 352 consensus_14137#3 GAGANTCAACACCN--TAAAAGGGAGGCGTCTGCACTTCAAGATGAGCTTGATATACTA- 84 consensus_14137#0 AAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTT-GTTCTCTCTGCTGG 1255 consensus_14137#2 GAGAATGGAAATGC-TTTTTCGCGGCTGGTCTTGGGCC-ATTGCCA--TCATTGGATCC- 308 consensus_14137#4 GAGAATGGAAATGCGTTTTTCGCGGCTGGTCTTGGGCCCATTGCCCATCNATTGGATCC- 95 ** * * * *** * consensus_14137#1 TCAAAAGGCTAAGGAGGAACCTCTCA----AACAAGGTGAGGATGACGCCCAAAGGAGAA 408 consensus_14137#3 -CAAGAGGAGAATGAGAGTGTTCTAN----AA-AAGCTACGACT--TGCTGAAGAAAGAT 136 consensus_14137#0 TCAAAAGGCTAAGGAGGAACCTCTCA----AACAAGGTGAGGATGACGCCCAAAGGAGAA 1311 consensus_14137#2 -CTGAATGGTGCTGC-AATCTTCGGGTGTTGA-GCAATGG-GCAG-TCTTCGGGTGTTGA 363 consensus_14137#4 -CTGAATGGNGCTGCCAATTTTCGGGGGTTGACACCATGGCGCAGATCTTCGGGTGTTGA 154 * * * * ** * * consensus_14137#1 ATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTCT 468 consensus_14137#3 GTGAANAAGCNNAAGCTA-GAGCCAAGGAGCTTGAGAAACNGGTNNC-------TGCCCT 188 consensus_14137#0 ATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTCT 1371 consensus_14137#2 GCGATATTATGGGCTTG-TCCA-GAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTT 421 consensus_14137#4 GCGATATTATGGGCTNGGTCCACGAGATATTGTGTAGTGGCACTGTGG------------ 202 * * * * * consensus_14137#1 CAGTTGAAATGGGGCTTAAAGAGCTTTCATCATTGA-AGTGGAAGATGCTGTGTGGTT-- 525 consensus_14137#3 TGGGGAAGGGGTNTCNTTAGAAGCTCGCCTC-TTGA-GCAGGAAAGAACTG--------- 237 consensus_14137#0 CAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAGGTGGAAGATGCTGTTGTGGTTG 1431 consensus_14137#2 TTGTCGAAATATTTTTGTGAAATGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCT 481 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 CACTTGG-CAACACCGGAACTATNTAGTCGG--AATTACATAGATTTAATACTGGGACCT 582 consensus_14137#3 CCCTTA---AACAGAGGGAGGCTGCACTGAA--GGCTGCNAGGG---ANTCNNNAGA--- 286 consensus_14137#0 CACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATC-AGATTTTAAATCA 1490 consensus_14137#2 CACTTCATCCAATTTGTGAATTTGTGATTAC---ACCACATGTGTACTGCCTGTTATT-- 536 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 AATCTTGAGCNTGACTACATA-AAGCAAAATTANTTACAGCTGGTTTCTTGAAAACTACT 641 consensus_14137#3 --TGGTAANGATGAAGA-ACA-ANATGATGTCTTTTGCNA-TAATGATTCNA-------- 333 consensus_14137#0 CCTGGTGAACCTAAATTCTTGGAGGCGTTTGATCTTAGCCATGAAGAGGCAGAAGATGTT 1550 consensus_14137#2 --CAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAAAAAAAAAA 594 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ATGATNGAAATGTAACGTTATTG------------------------------------- 664 consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AGCTTTAAGCAGGCATGGCTTATATACTTCTGGAGAAGAGCTAAAACTCATGGCATTGAG 1610 consensus_14137#2 AAAAAAAAA--------------------------------------------------- 603 consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 GAAGACATTGCTGAAGAACGGCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACT 1670 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 TCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGCTCAGGAAACTGGGCATAGAG 1730 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAAT 1790 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 CACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAA 1850 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 ATGCTTTTTCGCGGCTGGTCTTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCA 1910 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 ATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGAGCGATATTATGGGCTTGTCC 1970 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 AGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAA 2030 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 TGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATT 2090 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 ------------------------------------------------------------ consensus_14137#3 ------------------------------------------------------------ consensus_14137#0 TGTGATTACACCACATGTGTACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTAT 2150 consensus_14137#2 ------------------------------------------------------------ consensus_14137#4 ------------------------------------------------------------ consensus_14137#1 --------------------------------------------- consensus_14137#3 --------------------------------------------- consensus_14137#0 GCTTCCTGCGACAAATGAGCAAATCATAAGTGATGATTCTTTCTG 2195 consensus_14137#2 --------------------------------------------- consensus_14137#4 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||