These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2153 fasta sequence [GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGGAATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCGCCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCATTACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT---GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG----ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAAAGTACAAAGTCTTAATTAACCAAAAAAGGA] [+] EMBL AK066763 [GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGGAATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCGCCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCATTACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGC ] [+] EMBL CB656316 [ CAGTGCTGTTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTG ] [+] EMBL CB660503 [ GCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCAAGTCATCGATGCTGACNATCGGGTCGAGCATCTGCGGGA ] [+] EMBL CB664232 [ TGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCTGCAACCTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCCCCCCGTTCCAGAGCAGGAT ] [+] EMBL CB665190 [ TCACCCATCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCG ] [-] EMBL CB650750 [ CGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACGGTGTACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCGGTTCAAATTTATGCCAACCAGAGCAAATTGTA ] [-] EMBL CB665191 [ TGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGATGCAGCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTAT ] [-] EMBL CB656317 [ GGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAAAGTACAAAGTCTTAATTAACCAAAAAAGGA] [-] EMBL CB664233 [ GGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA ] consensusID : consensus_14139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 833 fasta sequence [ATGAATTATGAAATTTCGGAACGAAATACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTA-CCTGTTCAAATTTAT-GCCAACCAGAGCAAATTGTATTATCATCCGCCTCAAAAAAAAGA] [-] EMBL CB681378 [ATGAATTATGAAATTTCGGAACGAAATACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTAGCCTGTTCAAATTTAT GCCAACCAGAGCAAAT ] [-] EMBL CB620674 [ TATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTGGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTA CCTGTTCAAATTTAT ACGAACCAGAGCAAATTGTATTATCATCCGCCTCAAAAAAAAGA] [+] EMBL BM038034 [ CCATCGGTGTCAAATTCACGGACTA TTGATCATTTATCTCTTGTAGATCCGTGGATA CTNCATCACAGAAACTCTGAATTTCTCTGTTCTTAAAT CAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATT CAGACCACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATT CCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCCATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTA GCAGTGTAGATCGATCA CGGTTAAGAGTTAAC AGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGAC TTGGTTATGTATCAGTTGTTGATGTA CCTG TCCAATTTATCCCCCACC GA CAATTTGTATTATCAaaa ] consensusID : consensus_14139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence [AGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCGGATGCATTACCTGCAGGGGATGAGTTTTTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACTCGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATACGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATT---A--AAAAAAAAAAGGGAAAN] [-] EMBL CB669231 [AGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCGGATGCATTACCTGCAGGGGATGAGTTTTTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACTCGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATACGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATT A AAAAAAAAAAGGG ] [-] EMBL CB660504 [ GCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGGGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCCCCACACATGGGGTCCCTGCCGAGGATGCCCCCGTTCATGGGGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTTGCCGTTGACCACCTCCAGCCACCGCCTTTGATGCATTACCTGCAGGGGATGAGCTTTTACCAGCTGGCCGGGGCCAAGAACCTTCAGCAGCAGCAGAACCCGGGGGAGGGGCCGCCCCCGCCACCGGCCGGAGGCAACCGGGCAGCCGGTGACTCCTGAGGACATTTTGCCCAAAAAATTCGACAACTGTAGTAAGTTTGAGAGCAAGGGTGGCCCCAGTTGATTGCCGTCAATTTGAAGATATGTATATAAGGCTTTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTCCCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTTTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGGGAATTTTTTTTTGCTAGGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTAGGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAA ] [+] EMBL AU056076 [ AGTTANCAAGTCGTGAATTCTTTTTNGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGNCATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTNTTNTCATCAAAAAAAAAAaaaaaan] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14139#0 GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGG 60 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 AATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAA 120 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 AAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTAC 180 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 TCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGA 240 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTG 300 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 AAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTC 360 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 TGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCA 420 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGT 480 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGA 540 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACC 600 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGG 660 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCG 720 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCG 780 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGG 840 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGA 900 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCG 960 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCT 1020 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 GCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGC 1080 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 AGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCG 1140 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 CCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCG 1200 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 AGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCAT 1260 consensus_14139#2 ------------------------------------------------------------ consensus_14139#1 ------------------------------------------------------------ consensus_14139#0 TACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGA--TGCTGGATGAAGC 1318 consensus_14139#2 -------------------------------------AGCATCGA--TGCTGGATGAAGC 21 consensus_14139#1 ---------------------------------ATGAATTATGAAATTTCGGAACGAAAT 27 * ** * * * * * *** consensus_14139#0 GATCGAGTATCTCAAGTCACTGCAGCTCCAGC--TAC-AGATGATGTGGATGGGC----- 1370 consensus_14139#2 GATCGAGTATCTCAAGTCACTGCAGCTCCAGC--TAC-AGATGATGTGGATGGGC----- 73 consensus_14139#1 ACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCA 87 *** ** * * ** ****** *** * *** ** * * consensus_14139#0 GGCGGAATGG---------CGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCA- 1420 consensus_14139#2 GGCGGAATGG---------CGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCA- 123 consensus_14139#1 GACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAAT 147 * * **** ** * ** ** * * * ** * * consensus_14139#0 GTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAG 1480 consensus_14139#2 GTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAG 183 consensus_14139#1 GAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTG-AGGGTGTGAACAC-AGG 205 * * * * * * * * **** * * ** ** * * consensus_14139#0 GATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCAT 1540 consensus_14139#2 GATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCAT 243 consensus_14139#1 TTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCAC 265 *** * * * * * * * * *** * * * ** *** consensus_14139#0 GGCCGACCCCTACGCCCGCTGCC--TCGCCGTCGACCACCTCCAGCCACCGCCTCCGATG 1598 consensus_14139#2 GGCCGACCCCTACGCCCGCTGCC--TCGCCGTCGACCACCTCCAGCCACCGCCTCGGATG 301 consensus_14139#1 TGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCA-CTGCATCCATCGGTG 324 * * * * *** * * *** * ** * ** * * ** * ** consensus_14139#0 CATTACCTGCAGG--GGATGAGCTTCTACCAGCTCG----CCGCGGCCAAGAACCTT-CA 1651 consensus_14139#2 CATTACCTGCAGG--GGATGAGTTTTTACCAGCTCG----CCGCGGCCAAGAACCTT-CA 354 consensus_14139#1 TCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACA 384 * * * * *** * ** * * *** ** * * * ** consensus_14139#0 GCAGCAGCAGAACACGGCGG----AGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCG 1707 consensus_14139#2 GCAGCAGCAGAACTCGGCGG----AGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCG 410 consensus_14139#1 GAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTAT 444 * * * * * * * ** * * * ** ** consensus_14139#0 CAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATAC----GACAACTGTAGTAAGTC 1763 consensus_14139#2 CAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATAC----GACAACTGTAGTAAGTC 466 consensus_14139#1 CACTCAC--ATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTC 502 ** * * * *** ** ** * ***** ***************** consensus_14139#0 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 1823 consensus_14139#2 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 526 consensus_14139#1 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 562 ************************************************************ consensus_14139#0 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 1883 consensus_14139#2 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 586 consensus_14139#1 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 622 ************************************************************ consensus_14139#0 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 1943 consensus_14139#2 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 646 consensus_14139#1 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 682 ************************************************************ consensus_14139#0 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 2003 consensus_14139#2 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 706 consensus_14139#1 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 742 ************************************************************ consensus_14139#0 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 2063 consensus_14139#2 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 766 consensus_14139#1 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 802 ************************************************************ consensus_14139#0 AATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAA 2123 consensus_14139#2 AATTGTATTAAAAAAAAAAAGGGAAAN--------------------------------- 793 consensus_14139#1 AATTGTATTATCATCCGCCTCAAAAAAAAGA----------------------------- 833 ********** * consensus_14139#0 AGTACAAAGTCTTAATTAACCAAAAAAGGA 2153 consensus_14139#2 ------------------------------ consensus_14139#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||