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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1991 fasta sequence
[CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGGCGA-GATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC-AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCGTGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGCTTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGCTACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC-TCCAGATACTT-GGTGC-TGAAAAGGCAC-TTTTCA-GGGCATTGAAAACTA-GGGGGAATAC-GCCAAAGTAT--GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA-ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC-TGGAGGAGGAGCCAC-AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG-AACGGTAC-TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA-GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCGTTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG]
[+] EMBL AK069305 [CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGGCGA GATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCGTGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGCTTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGCTACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAG ATAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTC ]
[+] EMBL AU091415 [ TAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCCGCCGACGCCGCCGG GANNATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGCCTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCCGTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAGCTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTACAAGCCTCGGCGTCGTCGAGCCCAAng ]
[+] EMBL CA998972 [ AACCGCGTTGAC ACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAATGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCTAAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAG ]
[+] EMBL OSR32601A [ TTCGAAGTTAGCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCAATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTCTTCCAGATACTTGGGTGCTTGAAAAGGCACTTTTTCAGGGGCATTGAAAACTAGGGGGGGATACGGCCAAAGTATTGGGCCTT ]
[+] EMBL CA998340 [ AGAGTCATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGATATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAG AAAAGAAGAAG ]
[+] EMBL CA767278 [ AGATGAATGATATTGCACCAAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCATGCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTC TCCAGATACTT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACCGCGAAGCAATGGACCTGGACAAGCCTTCCAATTTGGCTGATGAAGCTGA ]
[+] EMBL AK059432 [ TT GGTGC TGAAAAGGCAC TTTTCA GGGCATTGAAAACTA GGGGGAATAC GCCAAAGTAT GGCCTTATATTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCGTTATAACAAAACTTCAC ]
[+] EMBL C28523 [ AGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCAGTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGTTGAAGCTGACGGCGAAG AATGGACCTGGNCAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGG ACTGAG AGAAG AAAAG AG AG AG ACAA N TGGAGGAGGAG CNC A GAGCAG ]
[+] EMBL AU161388 [ TGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATNATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAG AATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGANGAAGAAAAAGAAGAAGAAGCACAAGCTTNGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG ACCGGTACTTCCCAAa ]
[+] EMBL AK059026 [ GCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA ACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAA ]
[+] EMBL BI801943 [ TCTAAAGCTGAAGCTGACCGCGAAGCCATGGACCTGGACAAGCCTTCC ATTTGGCTGATGAAGCTGAGCCTGGATACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGC TGGAGGAGGA CCACAAGGA CAGGAGAAGAGCGTGGCGCATGCCAATGGCGAC CCGAAGAGCAACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAACGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCAT GCTGATCTTTCTGATTAGT TT TTGGAA CAGA TT AAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGACCAGTCCTGAACTACCCCCTT CCCTCCCATCCTCTTTCCCT ]
[+] EMBL AU184650 [ CTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTGGCTGATGAAGCTGAGCCTGGA NCTGAGAAGAAGAAAAAGAAGAAGAAGCCCAAGC TGGAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCAaaaaaaaaa ]
[+] EMBL AU225929 [ gcc gctAGGAGGAGCCAC AGGAGCAGGAGAAGAGCGTGGCGC TGCCAATGGCGACGCCGAGGAG AACGGTAC TCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAA GAAAAAGAAGAAGTCCAAGACGGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAAATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAATTATCGCTGCCGTTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG]
consensusID : consensus_14147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1396 fasta sequence
[TAACCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGCGAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCTGAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCGTGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGCCTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGAACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAAAGAGAAGAACGAC]
[+] EMBL AK107041 [TAACCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGCGAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCTGAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCGTGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGCCTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGAACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAAAGAGAAGAACGAC]
consensusID : consensus_14147#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[AGAGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGGCAAGAGCAGTCCTGAGCTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTTTCAAAAAAAAAAAA]
[-] EMBL CA760754 [AGAGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGTCCAAGACCGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAAAAAAACACCTAGATTCCTAGTTCCTGAAGGCAAGAGCAGTCCTGAGCTATGAAATTGCCCTCCCATCCTCTTTCCCTCATTCGATGTTTTCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14147#0 CTCCCCTAAAACCCTAACCCCCCTTCCGCCGCCGCCCCCAAACCTCAACCCGCCGCCGCC 60
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 GCCGACGCCGCCGGCGAGATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCCGGCTACGGC 120
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 CTCTTCCACGCCTACGGCATCGACGAGATCGGGCAGAGCGTGGACGCCGTCCGCGCCTCC 180
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 GTCGTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCC 240
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 TCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGGGATCATGACCGACGAG 300
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 CTGAGGAGCTTCCTGGAGCTGAACCTGCCCAAGCCCAAGGAGGGGAAGAAGGCCAAGTAC 360
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 AGCCTCGGCGTCGTCGAGCCCAAGGTCGGCTCCCACATCTCCGAGGTCACCGGCATCCCG 420
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 TGCCAGAGCAACGAGTTCGTCCAGGAGCTTCTCCGCGGCGTCCGCCTCCACTTCGACCGC 480
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 TTCATCAGCGAGCTCAAGAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGC 540
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 TACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCT 600
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 ATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGGGAA 660
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 TGGTTTGGATGGCATTTTCCTGAGTTGGTCAAAATTGTCAATGACAACTACATCTATGCT 720
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ------------------------------------------------------------
consensus_14147#0 AAGCTTGCTGATTATATAAAGGACAAATCTGAGTTGGCGGAAAAAGATATTTCGAAGTTA 780
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ---------------------------------------------------------TAA 3
consensus_14147#0 GCTGATCTGATTGGAGATGAAGATAAGGCAAAAGAAGTTGTCGAAGCAGCAAAGGCTTCA 840
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 CCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGACGGCGCTGTACC 63
consensus_14147#0 ATGGGTCAGGATCTGTCAGAAGTTGATTTGATGAATGTGAAGCAGTTTGCTCAAAGAGTC 900
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 TGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCG 123
consensus_14147#0 ATGAATCTGTCTGAATATCGTAAAAACCTTTATGAGTATCTTGTTACCAAGATGAATGAT 960
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 GGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCG 183
consensus_14147#0 ATTGCACCGAATCTAACATCATTAATTGGTGAAGTTGTTGGAGCACGCCTTATCTCTCAT 1020
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 TCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACG 243
consensus_14147#0 GCTGGCAGTCTTTCAAACCTTGCTAAGTGTCCTGCCTCCACTCTCCAGATACTTGGTGCT 1080
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 CCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCA 303
consensus_14147#0 GAAAAGGCACTTTTCAGGGCATTGAAAACTAGGGGGAATACGCCAAAGTATGGCCTTATA 1140
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 AGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGT 363
consensus_14147#0 TTCCACTCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATAT 1200
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 CCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGC 423
consensus_14147#0 CTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGAGTCAGCTACCGCA 1260
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 TCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGG 483
consensus_14147#0 GTCTTTGGGCAAAAGCTTCGTGAGCAAGTTGAGGAGCGGTTAGACTTCTATGACAAGGGT 1320
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 AAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGA 543
consensus_14147#0 GTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGAT 1380
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATA 603
consensus_14147#0 GCCACAAATGATGTTGATGATGGCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAA 1440
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 TCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCA 663
consensus_14147#0 AAGAAGTCTAAAGCTGAAGCTGACGGCGAAGCAATGGACCTGGACAAGCCTTCCAATGTG 1500
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 AAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTG 723
consensus_14147#0 GCTGATGAAGCTGAGCCTGGAACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGCTGGAG 1560
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAA 783
consensus_14147#0 GAGGAGCCACAGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGAGGAGAAC 1620
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 AAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGA 843
consensus_14147#0 GGTACTCCCAAGAAGAAGAAGAAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAG 1680
consensus_14147#2 ----------------------------------------------------------AG 2
consensus_14147#1 TCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTT 903
consensus_14147#0 ACGGCCACTGAAGGGAAGAAGAAAAAGAAGAAGT-CCAAGACGGAGGACAGCGACTGAGT 1739
consensus_14147#2 AGGACGAGACAAGGGGAGAAGAAAAAGAAGAAGT-CCAAGACCGAGGACAGCGACTGAGT 61
consensus_14147#1 ATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTG 963
* * * * * * ** ** * **** * ** ** ** **
consensus_14147#0 GATCGGTTTGC--CTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGT 1797
consensus_14147#2 GATCGGTTTGC--CTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGT 119
consensus_14147#1 AAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGC 1023
* *** * ** ** ** * **** ** * * * ** ** *
consensus_14147#0 TAAAAAAAACACCTAGATTCCT--AGTTCCTGAAG--ACAAGAGCAGTCCT--GAACTAT 1851
consensus_14147#2 TAAAAAAAACACCTAGATTCCT--AGTTCCTGAAG--GCAAGAGCAGTCCT--GAGCTAT 173
consensus_14147#1 GAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGAGCTCT 1083
** * * * ** * * *** ** * ** *** * * ** ** *
consensus_14147#0 GAAA--------TTGCCCTCCCA---------TCCTCTTTCCCTCATTCGATGTTA---- 1890
consensus_14147#2 GAAA--------TTGCCCTCCCA---------TCCTCTTTCCCTCATTCGATGTTT---- 212
consensus_14147#1 GAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCG 1143
**** * * * **** ** * ** * ***** * **
consensus_14147#0 ----TCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAAGTATCGCTGCCG 1946
consensus_14147#2 ----TCAAAAAAAAAAAA------------------------------------------ 226
consensus_14147#1 TGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGC 1203
****
consensus_14147#0 TTATAACAAAACTTCACTTGAAAAAAAAACCGCGGCCGCTAGCGG--------------- 1991
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 CTCACGCATCGACTGTTATTCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGA 1263
consensus_14147#0 ------------------------------------------------------------
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 ACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGA 1323
consensus_14147#0 ------------------------------------------------------------
consensus_14147#2 ------------------------------------------------------------
consensus_14147#1 TGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGAAAA 1383
consensus_14147#0 -------------
consensus_14147#2 -------------
consensus_14147#1 AGAGAAGAACGAC 1396
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||