These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCTCCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCCCGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGACATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGCTGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTCGTGATAGTGTCTTTGGCTTATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGATAATTTCAG] [+] EMBL AK109186 [AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCTCCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCCCGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGACATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGCTGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTCGTGATAGTGTCTTTGGCTTATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGATAATTTCAG] consensusID : consensus_1415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL BE040540 [GTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1415#0 AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCT 60 consensus_1415#1 ------------------------------------------------------------ consensus_1415#0 CCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCC 120 consensus_1415#1 ------------------------------------------------------------ consensus_1415#0 CGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGA 180 consensus_1415#1 ------------------------------------------------------------ consensus_1415#0 CATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGC 240 consensus_1415#1 ------------------------------------------------------------ consensus_1415#0 TGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGT 300 consensus_1415#1 ----------------------------------------------------------GT 2 ** consensus_1415#0 TGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGT 360 consensus_1415#1 TGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGT 62 ************************************************************ consensus_1415#0 TAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAA 420 consensus_1415#1 TAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAA 122 ************************************************************ consensus_1415#0 ACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTAC 480 consensus_1415#1 ACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTAC 182 ************************************************************ consensus_1415#0 TCGACGTCCCAAGTAGAAATGCCCCTTTTTTTT--CGTGATAGTGTCTTTGGCTTATAGG 538 consensus_1415#1 TCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGG 242 ********************************* ******************* ***** consensus_1415#0 CAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTC 598 consensus_1415#1 CAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTC 302 ************************************************************ consensus_1415#0 AAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCAT 658 consensus_1415#1 AAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCAT 362 ************************************************************ consensus_1415#0 GTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGAT 718 consensus_1415#1 GTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 422 ************ * * consensus_1415#0 AATTTCAG-- 726 consensus_1415#1 NNNNNNNNNN 432 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||