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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1357 fasta sequence
[TGTGTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC-TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC-TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG-AAAGTCATGAGGAAGCTG-CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG-CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG-CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT-CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG-CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG-TGGAAAAAAAAAAA]
[+] EMBL AK058356 [TGTGTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAGTAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG TGGA ]
[+] EMBL AK102880 [ TTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTT ]
[+] EMBL AU064550 [ gcangnCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGNTTCAAGCCCCCCTCCTCCTCCTCCGNCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTTGCTGTCGGTGGAGG CAAGCTGAGGAATCTAGGATGCATTGGAATTGG ]
[+] EMBL AU082535 [ CACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCG CGTNTCAAGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACG GGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAA GTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAANGCGAA AGCGANGGGTATCTGT GGGGAAT GAACTTGC ACTNGTAATTCTGACAANAAGAA CTCC TTGCTGTAATTGGAG TTACACTGGTTTTGG ]
[+] EMBL OSS13223A [ nACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCG CGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACG GGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAA GTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAAGGGTATCTGTGGGGGAATGGAAC TGCTACTTGTAGTTCTGACAAGAAGAAGCTCCTTTGCTGTTATTNGAGTTTANACTG ]
[+] EMBL OSA506739 [ CTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTC ]
[+] EMBL CA998031 [ TGTGGCAGGACGCGCATACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCTGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCACAAATGGACCTTACAAAGGCGAATAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAATAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAAGAACACCTTCCGT ]
[+] EMBL CB000293 [ TCTGACAAGAAGAAGCTCC TTGCTGTTATTGGCTTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCCTTTTGTATACACCAAGCGGCTTCTGGGATGAAAAATAAATACATCATTTCAAACGCTGCTTTATCCGATCAGTATAC ]
[+] EMBL AU029621 [ cCTTGAAAAGTCTTGAGGAAGCTGCCAGAGGAGTTACCAAGCAAANTTAAGTTTTNCTTCAGTGCCAGC ATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTGGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCCGGTGCCTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG TGGAAAAAAAAAAA]
[+] EMBL BI805376 [ CACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACC AGCGGCTTCTGGAATGAAAAATAGATACATCATTTC AACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACCCAAACTATAAAAGCGCTGAGCTTATTTTTGGCTGGAAAAAAA ]
consensusID : consensus_14160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence
[TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTG-TTGACAAAAAAAAGAAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAGTTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG]
[-] EMBL CB683276 [TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTG TTGACAAAAAAAAGA ]
[-] EMBL CF304956 [ gTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTGTTTGACATATTTGTCGAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAGTTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG]
consensusID : consensus_14160#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTGCTTGTCGGTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGAAGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTATNTTTTGGGGGGGANTTGAACCTCCTANCTT]
[+] EMBL C28096 [AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTGCTTGTCGGTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGAAGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTATNTTTTGGGGGGGANTTGAACCTCCTANCTT]
consensusID : consensus_14160#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[GCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGGTAAAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGCT]
[+] EMBL OSA506740 [GCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGGTAAAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGCT]
consensusID : consensus_14160#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTCTTCNANTGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATNGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGNTGTNGCAGGACGCGCAGACGGANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTTCCGAAGTGCTGTCGGTNGAGGACAAGCTGAGGAATCTAGGATG]
[+] EMBL OSS15223A [GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTCTTCNANTGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATNGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGNTGTNGCAGGACGCGCAGACGGANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTTCCGAAGTGCTGTCGGTNGAGGACAAGCTGAGGAATCTAGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 ------------------------------------------------------------
consensus_14160#1 TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAA 60
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 ------------------------------------------------------------
consensus_14160#1 TCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACC 120
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 ---------------------------------------------------------TGT 3
consensus_14160#1 AAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGT 180
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 GTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCC 63
consensus_14160#1 GAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCG 240
consensus_14160#3 -------------------------------------------------------GCCCG 5
consensus_14160#2 ---AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGC-GTNTCAAGC 56
consensus_14160#4 ----GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTC-TTCNANTGC 55
consensus_14160#0 ACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGC 123
consensus_14160#1 TCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA 300
consensus_14160#3 TCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA 65
* * **** *** * * * ** *
consensus_14160#2 CCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 116
consensus_14160#4 CCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 115
consensus_14160#0 CCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 183
consensus_14160#1 GGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCG 360
consensus_14160#3 GGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCG 125
* * * * * * ***
consensus_14160#2 TCATGGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-GCTGTGGCAGG 173
consensus_14160#4 TCATNGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-N-TGTNGCAGG 171
consensus_14160#0 TCATGGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-GCTGTGGCAGG 240
consensus_14160#1 CCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAA 420
consensus_14160#3 CCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAA 185
*** * ** * * * ** * * * ** ** * *
consensus_14160#2 ACGCGCAG----ACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTT 229
consensus_14160#4 ACGCGCAG----ACGG-ANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTT 226
consensus_14160#0 ACGCGCAG----ACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTT 296
consensus_14160#1 CAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGG 480
consensus_14160#3 CAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGG 245
* *** ** * ** * * * ** * * * * **
consensus_14160#2 CCGAAGTGCTTGTCG-GTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGA 288
consensus_14160#4 CCGAAGTGCT-GTCG-GTNGAGGACAAGCTGAGGAATCTAGGATG--------------- 269
consensus_14160#0 CCGAAGGTGCTGTCG-GTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATT--GGG 353
consensus_14160#1 GCTGAATACTACTTATGTTGATGACGACCGTTTGTG-CTGCGGCAGTTCTAGACAAGAGA 539
consensus_14160#3 GCTGAATACTACTTATGTTGATGACGACCGTTTGTG-CTGCGGCAGTTCTAGACAAGGTA 304
* * * ** ** * * * * * ** *
consensus_14160#2 AGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTAT 348
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 AGGAAGATTGCGGAGGCAGAAA---TGGACCTTACAAAGGCGAA-GAGCGAGGGGTATCT 409
consensus_14160#1 AAGTATGTTCCCACGCATGAGTTAGC--AGCACGCATGGTT-ATGACGGTGGTGTCCTGA 596
consensus_14160#3 AAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGC 364
consensus_14160#2 NTTTTGGGGGGGANTTGAACCTCCTANCTT------------------------------ 378
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 GTGGGGGAATGGAACTGCTACTGGTAGTTCTGACAAGAAGAAGCTCCTTGCTGTTATTGG 469
consensus_14160#1 TGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAA 656
consensus_14160#3 T----------------------------------------------------------- 365
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 AGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCC 529
consensus_14160#1 AAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTA 716
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 GAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGG 589
consensus_14160#1 GGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTGT 776
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 TCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGAC 649
consensus_14160#1 TGACAAAAAAAAGAAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAG 836
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 GAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGT 709
consensus_14160#1 TTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG-------------------- 876
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 TAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGA 769
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 TGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAG 829
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 CCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACA 889
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 ATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTC 949
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 CGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATC 1009
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 GCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATAC 1069
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 TACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTC 1129
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 CCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACG 1189
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 CTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATC 1249
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------------------
consensus_14160#4 ------------------------------------------------------------
consensus_14160#0 ATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTG 1309
consensus_14160#1 ------------------------------------------------------------
consensus_14160#3 ------------------------------------------------------------
consensus_14160#2 ------------------------------------------------
consensus_14160#4 ------------------------------------------------
consensus_14160#0 ACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAAAAAAAAAAA 1357
consensus_14160#1 ------------------------------------------------
consensus_14160#3 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||