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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1563 fasta sequence
[TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG--AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC-AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC-AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC-AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCG]
[+] EMBL CB683577 [TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGTTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAAC ]
[-] EMBL BQ909101 [ TTTTGACACCATAAAGGCAATGTATGGTGCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGA ]
[-] EMBL BI813052 [ tttttTTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATG TTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTG TTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGGTTTCAGGAAGT ]
[+] EMBL CB659599 [ GTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGTTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTG ]
[-] EMBL CA765208 [ TCCTATTCATTCATTC TGGG TTGACCAGTTTTATGAGATANCCAATCAAGGACCCGAGCCCCTGCCAGAAGCGAAAACGATGNAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAAGAGGCCTTNGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACAAATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACACGCAACAGTGCATGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTAC AGTTCcccctt ]
[-] EMBL CB659598 [ GGCATGCGGCCATGTTGAGATGACATGGATTTTCNACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTT ]
[-] EMBL CB683163 [ ttTTTGAAATACTCA TGCCCTCAAATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTT ]
[-] EMBL CF322121 [ agctAACCACAGGTGGGACAGAGCCATCTTGCGCAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGACGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGAATAAAAAATCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTT ATGCGGGCTTCCCTTTTCGACGCGGCCG]
consensusID : consensus_14166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAATGTCAGGAGTTTCTAACAACAATATTTGACACCGATTGCGTGCTGCACAACTCGAATTTCCAACCTACAGTACAAGATGGTCAATACTGCATAATTTTTCCAGTAAAACATGTCCTATCCCTACTCATCCTTGCGTTTGAACAGTTTAACAAGATAGCCAATTAAGGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGGCCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGCTGCTTCAATCCTTTCTTCCACTG]
[-] EMBL AK065114 [AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAATGTCAGGAGTTTCTAACAACAATATTTGACACCGATTGCGTGCTGCACAACTCGAATTTCCAACCTACAGTACAAGATGGTCAATACTGCATAATTTTTCCAGTAAAACATGTCCTATCCCTACTCATCCTTGCGTTTGAACAGTTTAACAAGATAGCCAATTAAGGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGGCCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGCTGCTTCAATCCTTTCTTCCACTG]
consensusID : consensus_14166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACCTGAAGAATAGGATTATGAGTTCATCATCCAGTCAATAATTATTCGGTTTCGGAAAAAGGGGGAAAAATTCTTCACTTGATGAATTGCCAGGTCAGTTACGTCATGAAATTAGTGAGGGTTGTCTTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCACTTTTTGGTCCAAGCGTCTAGTTA]
[+] EMBL CB619562 [CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACCTGAAGAATAGGATTATGAGTTCATCATCCAGTCAATAATTATTCGGTTTCGGAAAAAGGGGGAAAAATTCTTCACTTGATGAATTGCCAGGTCAGTTACGTCATGAAATTAGTGAGGGTTGTCTTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCACTTTTTGGTCCAAGCGTCTAGTTA]
consensusID : consensus_14166#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence
[GGCCCGCCCNTTTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTTCTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTATGGGNATTTCCATAGAAACAACAACNAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGNGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCC-GCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA]
[-] EMBL AU077762 [GGCCCGCCCNTTTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTTCTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTATGGGNATTTCCATAGAAACAACAACNAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGNGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCC GCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA]
[-] EMBL AU077763 [ TTTTTTTTACTGAGCCCC TAGTACATGTAACTTTAC AAATGTATGTTCTGAGCCCCTGATACACAGAGAATAAGTTCTC TTATTAT GGAACTTCCATAGAAACAACAACGAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCCTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTAT GACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCANCAGCCGGCCAGCGAGANGTCGCCGTCCGGCCGCCGCTTNATGCGGGCTTNCCTTTTCGACGCGGCC ]
consensusID : consensus_14166#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
[-] EMBL AU225473 [TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
consensusID : consensus_14166#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence
[TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTGTGAGGGCGATTGACAACTTGCAAGGACATAAAGACTAAATAGTTATATTTTTATTACTAATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTAACTATATAACTTTCCTACAAATATCTTTTGGACACTCTT]
[+] EMBL CF306900 [TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTGTGAGGGCGATTGACAACTTGCAAGGACATAAAGACTAAATAGTTATATTTTTATTACTAATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTAACTATATAACTTTCCTACAAATATCTTTTGGACACTCTT]
[+] EMBL CF306898 [TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTA 60
consensus_14166#2 ------------------------CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTA 36
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ----AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAAT 56
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 GCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGAT 120
consensus_14166#2 GCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGAT 96
consensus_14166#3 -------------------------------------------------GGCCCGCCCNT 11
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 GTCAGGAGTTTCTAACAACAATATTTGA--CACCGATTGCGTGCTGCACAACTCGA-ATT 113
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 TGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGA-ATT 179
consensus_14166#2 TGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGA-ATT 155
consensus_14166#3 TTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTT 71
consensus_14166#5 -----------------------------------------------------TTGGGTT 7
consensus_14166#1 TCCAACCTACAGTACAAGATGGTCAATACTG---CATAATTTTTCCAGTAAAACATGTCC 170
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATC 239
consensus_14166#2 CCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATC 215
consensus_14166#3 CTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTA--TGGGNATTTCCATAGAAAC 129
consensus_14166#5 CAAGGCTCTCTGCATA---AATTCGAGGATACTTGGCAAGAACAGCA-TCCCATTGAACT 63
consensus_14166#1 TATCCCTACTCATCC------TTGCGTTTGAACA----GTTTAACAAGATAGCCAATTAA 220
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CGTTCCTATTCATTC--ATTCTTGGGTTTGAACA----GTTTTATGAGATAACCAATCAA 293
consensus_14166#2 CGTTCCTATTCATTC--ATTCTTGGGTTTGAACA----GTTTTATGAGATAACCAATCAA 269
consensus_14166#3 AACAACNAG--ATGA--AATGTGATGATAAGACA----AATGCTAATGAAGGTGGAATAT 181
consensus_14166#5 AGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGC 123
consensus_14166#1 GGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGG 280
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 GGACACGAGCCACTGCCAGAAGCGAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGG 353
consensus_14166#2 GGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGG 329
consensus_14166#3 ATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGA 241
consensus_14166#5 ATGCATGCC-TTCTATAGATGATACACATCAA-ATAGCTTACTCTTATGCCATTCTGATC 181
consensus_14166#1 CCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTG 340
consensus_14166#4 ------------------TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTG 42
consensus_14166#0 CCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTG 413
consensus_14166#2 CCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTG 389
consensus_14166#3 C-----ATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATG 296
consensus_14166#5 TTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATC 241
* * ** * * *
consensus_14166#1 CTCCGCGAGCGACCG-AAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGG 399
consensus_14166#4 CTCCGCGAGCGACCG-AAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGG 101
consensus_14166#0 TTCCGCGAGAGACCG-AAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGG 472
consensus_14166#2 TTCCGCGAGAGACCG-AAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGG 448
consensus_14166#3 ACTTGTTTTTTAACT-TTG-TCATGAAGGACCTCCATAT-TAGNGGAAACCACAGGTGGG 353
consensus_14166#5 AGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTG 301
* * * * * * * * * *
consensus_14166#1 CCTTCAGGAA-GTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCT 458
consensus_14166#4 CCTTCAGGAA-GTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCT 160
consensus_14166#0 CTTTCAGGAA-GTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCT 531
consensus_14166#2 CTTTCAGGAA-GTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCT 507
consensus_14166#3 -----ACAGA-GCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAG-T 406
consensus_14166#5 TGAGGGCGATTGACAACTTGCAAGGA--CATAAAGACTAAATAGTTATATTTTTATTACT 359
* * * * * * ** * * *
consensus_14166#1 CGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCG 518
consensus_14166#4 CGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCG 220
consensus_14166#0 CGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACAATACTACACTGTGCG 591
consensus_14166#2 CGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACC-TGAAGAATAGGATT 566
consensus_14166#3 TATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCG-GCG 465
consensus_14166#5 AATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTA 419
* * * *
consensus_14166#1 ATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGC-AGGG 577
consensus_14166#4 ATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGC-AGGG 279
consensus_14166#0 ATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGAC-ATGG 650
consensus_14166#2 ATGAGTTCATCA------TCCAGTC--AATAATTATTCGGTTTCGGAAAAAGGGGGAAAA 618
consensus_14166#3 GCGAGCCCTCTT--CTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGG 523
consensus_14166#5 ACTATATAACTT----TCCTACAA-ATATCTTTTGGACACTCTT---------------- 458
* *
consensus_14166#1 ATTTTTCACA-GCTAAG--GCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATC 634
consensus_14166#4 ATTTTTCACA-GCTAAG--GCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATC 336
consensus_14166#0 ATTTTTCACA-GCCAAG--GCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTC 707
consensus_14166#2 ATTCTTCACTTGATGAATTGCCAGGTCAGT-TACGTCATGA--AATTAGTGAGGGTTGTC 675
consensus_14166#3 GTTTGGGGGCTTCCGAGCTCCGAGGCGGACG---GTTCGAGGAGATGAGACTGAGAAGTC 580
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 A-TCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTT 693
consensus_14166#4 A-TCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTT 395
consensus_14166#0 A-TCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTT 766
consensus_14166#2 --TTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCA---CTTTTT 730
consensus_14166#3 AAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCA--GCCGCCAGCGAGACGTCGC 638
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 CTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTG---CTGCTTCAATCCTTTCTT 750
consensus_14166#4 CTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAG-CGGCCGCGAAT-TCGCGG 453
consensus_14166#0 CTTTGAAATACTCATTGCCCTCAATCTTCCTCCTGTCCG---CTGCTTCAATCCTTTCCT 823
consensus_14166#2 GGTCCAAGCGTCTAGTTA------------------------------------------ 748
consensus_14166#3 CGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA--------- 689
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 CCACTG------------------------------------------------------ 756
consensus_14166#4 CCGCTAGCGGC------------------------------------------------- 464
consensus_14166#0 CTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAA 883
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCC 943
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAA 1003
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGAT 1063
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 GCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGT 1123
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 GCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTT 1183
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 TTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCAT 1243
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTG 1303
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 AACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCT 1363
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTC 1423
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 CGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGA 1483
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 ------------------------------------------------------------
consensus_14166#4 ------------------------------------------------------------
consensus_14166#0 GACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGC 1543
consensus_14166#2 ------------------------------------------------------------
consensus_14166#3 ------------------------------------------------------------
consensus_14166#5 ------------------------------------------------------------
consensus_14166#1 --------------------
consensus_14166#4 --------------------
consensus_14166#0 TTCCCTTTTCGACGCGGCCG 1563
consensus_14166#2 --------------------
consensus_14166#3 --------------------
consensus_14166#5 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||