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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 771 fasta sequence
[CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC-GCCAACGCCGCCCGGAAGGACCTCCCCCAGA-TCGTCTGCCCCAACT-GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT-ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT-GTGT-ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT-ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATGGAACAATATTAACATGTTCTTACTCCTCAAACCTAAAAAGA]
[+] EMBL AK099779 [CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTC ]
[+] EMBL CA754499 [ AGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACTGGCACGGGCCTCGGCAAGGTCCGGCAGATCGACAAGGAATCATCCATCTCT ACCTACCTGGTTCATCGACGATGCATCCGTCCGTCCATCATCATCCAGGTGCCAGCTTCTGATCATCTGAT ACTATATACTTGT GTGT ATCTCACCATCTGGGTGCGGCGTCGATATGACTATATCCCTATCATCCGGAGTTTGCAACGGTGGAATAA TCCGTATATCTGCGGTAAT ]
[+] EMBL CB667299 [ CACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCACCGCTCTGCAC TCCAcc ]
[+] EMBL BE230076 [ GCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCACGGAAGGACACGTGCCCGG ]
[+] EMBL AK121142 [ GAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATG ]
[+] EMBL CB645094 [ GAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCT ]
[+] EMBL BI811399 [ GTTCGTGCGCAA GGCGGCCCCAC TTGCGCTGCCAACGCCGCCCGGAAGGACCTCCCCCCGAGTCGTTTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCTGACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGTGGTGTGATCTCACCATCTGT ]
[-] EMBL CB667300 [ CGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATGGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAAGGGAACAATATTAACATGTTCTTACTCCTCAAACCTAAAAAGA]
[+] EMBL AU032863 [ GGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTaa ]
[+] EMBL BQ907750 [ CAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCT GTCTACATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGG CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATGGAAAAAaaaaa ]
consensusID : consensus_14202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 464 fasta sequence
[ACACTTTCCCGGTTTTCGTCGGCCCCGGGTTCGTGCCCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCTCCCCCAGTTCGGTTTGCCCCAACTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACAAGTATTCATCCATCTTACCCTACCTGCTTCATCGACGATCCATCCAGTCCATCCATCATCAGTCCAGCTGCCAGCTTCTGAGTCACAAAAAACAGGGGTGTATCTTCCCCATCTGTCTACATAACTATATACTATAAGTCGTTAGTTTGGAACG-CTGGAATAATTCC-ATATATA-TGGTCTAA-TTCCAGTGTTCCA-AGCCGG-CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTC-TGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTTAATGGAACAAATATTAACATGTTCTTACTAAAAA]
[-] EMBL BU672918 [ACACTTTCCCGGTTTTCGTCGGCCCCGGGTTCGTGCCCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCTCCCCCAGTTCGGTTTGCCCCAACTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACAAGTATTCATCCATCTTACCCTACCTGCTTCATCGACGATCCATCCAGTCCATCCATCATCAGTCCAGCTGCCAGCTTCTGAGTCACAAAAAACAGGGGTGTATCTTCCCCATCTGTCTACATAACTATATACTATAAGTCGTTAGTTTGGAACG CTGGAATAATTCC ATATATA TGGTCTAA TTCCAGTGTTCCA AGCCGG CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTC TGATAAACATATTCATTGTCTCTCGCTGCTCTTCCGTTT ]
[-] EMBL CB965547 [ GTTTGGAACGCCTGGAATAATTCCNATATATAGTGGTCTAANTTCCAGTGTTCCACAGCCGGCCATTCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCGTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTT ]
[+] EMBL BI803182 [ TTCC ATATATA TGGTCTAA TTCCAGTGTTCCA AGCCGC CAATCGCTACTTAAATTCAATGTACTTGT TT CTGA CTACTTTGTCTC TGATATACATATTCATTGTCTCTC CTGCTCTTCCCTCTTAATGGAACAAATATTAACATGTTCTTACTAAAAA]
consensusID : consensus_14202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[GGGACCTCTGCGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTCTGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCTGACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCATNCCAAGCTGGGCCAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGCACCATCTGTGCTACATGAACTGATATGACTATGAATGCGTTACGTTTGGAACGCTGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGCAATCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTTGTCTCTGATA]
[+] EMBL BQ907459 [GGGACCTCTGCGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTCTGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCTGACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCATNCCAAGCTGGGCCAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGCACCATCTGTGCTACATGAACTGATATGACTATGAATGCGTTACGTTTGGAACGCTGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGCAATCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTTGTCTCTGATA]
consensusID : consensus_14202#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[TATACATGTGTGTATCTCACCATCTGTGTGCGTCGTCTATATAACTATATACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]
[+] EMBL CF333130 [TATACATGTGTGTATCTCACCATCTGTGTGCGTCGTCTATATAACTATATACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14202#2 ------------------------------------------------------------
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGT 60
consensus_14202#1 ------------------------------------------------------------
consensus_14202#2 ------------------------------------------------------------
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 CGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAG 120
consensus_14202#1 ------------------------------------------------------------
consensus_14202#2 ------------------------------------------------------------
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 TTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGT 180
consensus_14202#1 ------------------------------------------------------------
consensus_14202#2 ------------------------------------------------------------
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 GGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCT 240
consensus_14202#1 ------------------------------------------------------------
consensus_14202#2 --------------------------------------------------GGGACCTCTG 10
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 GGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGG 300
consensus_14202#1 --------------------------------------ACACTTTCCCGGTTTTCGTCGG 22
consensus_14202#2 CGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTC 70
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 CGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGCGCCAACGCCGCCCGGAAGGACCT 360
consensus_14202#1 CCCCGGGTTCGTGC-CCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCT 81
consensus_14202#2 TGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCT 130
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 CCCCCAGATCG-TCTGCCCCAA--CTGCAACGGCC-TCGGCAAGCTCGGCCAGATCGACA 416
consensus_14202#1 CCCCCAGTTCGGTTTGCCCCAA--CTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACA 139
consensus_14202#2 GACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCAT 190
consensus_14202#3 ------------------------------------------------------------
consensus_14202#0 AGTAATCATCCATCTCTACCTACCTGCTTC----ATCGACGATCCATCCA-TCCATCCAT 471
consensus_14202#1 AGTATTCATCCATCTTACCCTACCTGCTTC----ATCGACGATCCATCCAGTCCATCCAT 195
consensus_14202#2 NCCAAGCTGGGC--CAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGC 248
consensus_14202#3 -----------------------------------------TATACATGTGTGTATCT-C 18
consensus_14202#0 CATCA-TCCAGCTGCCAGCTTCTGATCATCTGAT--CACTATATACATGTGTGTATCT-C 527
consensus_14202#1 CATCAGTCCAGCTGCCAGCTTCTGA-------GT--CACAAAAAACAGGGGTGTATCTTC 246
* *** * ******** *
consensus_14202#2 ACCATCTGTGCTACATGAACTGATATGACTATGAATG------CGTTACGTTTGGAACGC 302
consensus_14202#3 ACCATCTGTG-TGCGTCGTCT-ATATAACTATATACTATAA-TCGTTA-GTTTGGAACGC 74
consensus_14202#0 ACCATCTGTG-TGCGTCGTCT-ATATAACTATATACTATAA-TCGTTA-GTTTGGAACGC 583
consensus_14202#1 CCCATCTGT----------CT-ACATAACTATATACTATAAGTCGTTA-GTTTGGAACGC 294
******** ** * ** ***** * ***** ***********
consensus_14202#2 TGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGC--------AA 354
consensus_14202#3 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGCTATATATCAA 131
consensus_14202#0 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGCTATATATCAA 640
consensus_14202#1 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGC--------AA 343
********************** *** * * ****************** **
consensus_14202#2 TCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTT-GTCTCTGATA-------- 405
consensus_14202#3 TCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAA 190
consensus_14202#0 TCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATT 700
consensus_14202#1 TCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATT 403
***************** * * * * *
consensus_14202#2 ------------------------------------------------------------
consensus_14202#3 AAAAACCCTGTCATGCCG------------------------------------------ 208
consensus_14202#0 CATTGTCTCTCGCTGCTCTTCCGTTT-AATGGAACAA-TATTAACATGTTCTTACTCCTC 758
consensus_14202#1 CATTGTCTCTCGCTGCTCTTCCGTTTTAATGGAACAAATATTAACATGTTCTTACTAAAA 463
consensus_14202#2 -------------
consensus_14202#3 -------------
consensus_14202#0 AAACCTAAAAAGA 771
consensus_14202#1 A------------ 464
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||