These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1450 fasta sequence [CCGAGTCGGGTCTCGCATCGCTCTCCTCCGCGAAGAGAGAGGGGGCGAAGATAGAAGGGGAGGGTCGGAGGGAGGACTGAGGAGGAGGAGGCGGTGCCGGTGACGGCGCACGGCGGCGGCGACTGCCTCCTCTCTCGCGGCTAGGGCGTCGGGCTGAGGTTTGGGCGGCGCTGGGCAGAAGTTTGGGCGGCGCACGGTGGTTGAGCTTAGCCGCTGAGAGCTCACGGCGGCAGTTGGCGGCGGGAGCGGCTCCCCACGGCGAGGAGGCGCACGGCAGGAGCTAGACAACGGCGGCGGCATAGCAGATCTGGTGCAAGGAGGAAGCTCAGGTGGCAGCAAACAGGAAGCTTTCTCCATTAGAAGGAATCAAACCGATCGAGAAGGATCAAACCAAGAAGAGAAAGGATCCTACATAGTATCTTGATACTGGTTACCTTGGCTAAGAGGACCGATCGGACTATTGGAGAGGAGGGGCTAAGTCGTCTCCACAACAGTGAACTGTCTCCGAGCCAAAACAGAACGAACGCCCAAACAGGCAAACCACGAACTCGAACCCTAGAAACCCTGACCATGGACTCGGGAGGCGGAGGAGGGGCATCGCACAAGGCAGCGTCGGGCTCCGCACCCTCGGGGGCGGCGGCCGCGAACCCCACGGCGATGCTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGAGCGCCAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGCATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATTCCAGACTCCAGTGAGACGAAAAAAAGACTCCAGCGAGACGAGAATCTGGATTGGCCGAANAAAA] [+] EMBL AK121569 [CCGAGTCGGGTCTCGCATCGCTCTCCTCCGCGAAGAGAGAGGGGGCGAAGATAGAAGGGGAGGGTCGGAGGGAGGACTGAGGAGGAGGAGGCGGTGCCGGTGACGGCGCACGGCGGCGGCGACTGCCTCCTCTCTCGCGGCTAGGGCGTCGGGCTGAGGTTTGGGCGGCGCTGGGCAGAAGTTTGGGCGGCGCACGGTGGTTGAGCTTAGCCGCTGAGAGCTCACGGCGGCAGTTGGCGGCGGGAGCGGCTCCCCACGGCGAGGAGGCGCACGGCAGGAGCTAGACAACGGCGGCGGCATAGCAGATCTGGTGCAAGGAGGAAGCTCAGGTGGCAGCAAACAGGAAGCTTTCTCCATTAGAAGGAATCAAACCGATCGAGAAGGATCAAACCAAGAAGAGAAAGGATCCTACATAGTATCTTGATACTGGTTACCTTGGCTAAGAGGACCGATCGGACTATTGGAGAGGAGGGGCTAAGTCGTCTCCACAACAGTGAACTGTCTCCGAGCCAAAACAGAACGAACGCCCAAACAGGCAAACCACGAACTCGAACCCTAGAAACCCTGACCATGGACTCGGGAGGCGGAGGAGGGGCATCGCACAAGGCAGCGTCGGGCTCCGCACCCTCGGGGGCGGCGGCCGCGAACCCCACGGCGATGCTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGAGCGCCAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGCATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATTCCAGACTC ] [+] EMBL AU056634 [ CCCCACGGCGATGCTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGAGCGCCAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGNTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTG ] [-] EMBL C99473 [ CCCACGGCGATGCTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGAGCGCCAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATGTGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGNAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAG ] [+] EMBL CA758221 [ CTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGCATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATTCCAGACTCCAGTGAGACGAGGATGAGACTCCAGCGAGACGAGAATCTGGATTGGCCGAANAAAA] [+] EMBL AU091702 [ tgggGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGCATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATTCCAGACTCCAGTGAGACGAAAAAA ] [+] EMBL AU070168 [ CTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGCATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGTCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTTAACTCTACTGTAAACAACGTTGCTATAGATTCCAGACTCCAGTGAGACGAAAAAA ] consensusID : consensus_14210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 689 fasta sequence [CGTTTCTCCTCGAGGCCGCGAAGAGAGAAGGGGGAGGGAGGACTGAGGCAGCGGCGGC-GGTAGCAGTGAAGGCACACGGCGCATGGTGGCAGGTGGTGGC-GGCTGCCTCCTCTCGCACAGCAAGGGCGCCGGGCGGAGGTCTGGGCGGCGCTGGGCGGAGGTCAGGGCAGCGCACGGCGGTTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGGAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATACCAACAGCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATCGTATTTTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGATAATGGTACTAGTTATTATTACTAAATATATGTCATGCAACAACTTTAATTTTTACTTTATTTTGGAGTACCAATCATATAATGATTGATTGAATGTGTTCCCCCCTCCCTGGCAATGAATGGCAGTGGGTAGCTAAAAAAAAAAAAAAA] [+] EMBL AK070570 [CGTTTCTCCTCGAGGCCGCGAAGAGAGAAGGGGGAGGGAGGACTGAGGCAGCGGCGGC GGTAGCAGTGAAGGCACACGGCGCATGGTGGC GGTGGTGGC GGCTGCCTCCTCTCGCACAGCAAGGGCGCCGGGCGGAGGTCTGGGCGGCGCTGGGCGGAGGTCAGGGCAGCGCACGGCGGTTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGGAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATACCAACAGCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATCGTATTTTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGATAATGGTACTAGTTATTATTACTAAATATATGTCATGCAACAACTTTAATTTTTACTTTATTTTGGAGTACCAATCA ] [+] EMBL AU173041 [ CCTCGAGGCCGCGAAGAGAGAAGGGGGAGGGAGGACTGAGGCAGCGGCGGCAGGTAGCAGTGAAGGCACACGGCGCATGGTGGCAGGTGGTGGCAGGCTGCCTCCTCTCGCACAGCAAGGGCGCCGGGCGGAGGTCTGGGCGGCGCTGGGCGGAGGTCAGGGCAGCGCACGGCGGTTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGGAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATA ] [-] EMBL CA756300 [ gcGGTGGTGGC GGCTGCCTCCTCTCGCACAGCAAGGGCGCCGGGCGGAGGTCTGGGCGGCGCTGGGCGGAGGTCAGGGCAGCGCACGGCGGTTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGGAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATACCAACAGCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATCGTATTTTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGATAATGGTACTAGTTATTATTACTAAATATATGTCATGCAACAACTTTAATTTTTACTTTATTTTGGAGTACCAATCATATAATGATTGATTGAATGTGTTCCCCCCTCCCTGGCAATGAATGGCAGTGGGTAGCTAAAAAAAAAAAAAAA] [+] EMBL AU164778 [ GGCGGAGGTCAGGGCAGCGCACGGCGGTTGGATTTGGCGCTGAGACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGGCAGGAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCAGGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTTGAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATACCAACAGCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATCGTATTTTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGATAATGGTACTAGTTATTATTACTAAATATATGTCATGCAACAACTTTAATTTTTACTTTATTTTGGAGTACCAATCATATAATGATTGATTGAAaaa ] consensusID : consensus_14210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [GGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGGAATTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTCCTGTGCTTGTATTTTCTTCCTTTTCAACCCACCCCGGCGTGCTGATTGGCTCCGTTTGTAAGCAGACAAGTAATTAGACGGGATAATTCTGTACTCTACTGGAACAACGTGTATAGATTCAGACTCAGTGAGACGAGATGAGACTCAGCGAGACGAGATTGGT] [+] EMBL BU572366 [GGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGGAATTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTCCTGTGCTTGTATTTTCTTCCTTTTCAACCCACCCCGGCGTGCTGATTGGCTCCGTTTGTAAGCAGACAAGTAATTAGACGGGATAATTCTGTACTCTACTGGAACAACGTGTATAGATTCAGACTCAGTGAGACGAGATGAGACTCAGCGAGACGAGATTGGT] consensusID : consensus_14210#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [AGCTGAAACCAGGAACAATTGANACTCTGGGCTCAATACTAGCTGCATCCTGGCAGATGGAAGANAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAANAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACNGCCATCAAATGATCCAGATCTGGACGACGAANAGGACTTCTAACTCGACATGTTGTANGCCTAGCTCANTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAANCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGTATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGGCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTT] [+] EMBL BE530965 [AGCTGAAACCAGGAACAATTGANACTCTGGGCTCAATACTAGCTGCATCCTGGCAGATGGAAGANAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAANAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACNGCCATCAAATGATCCAGATCTGGACGACGAANAGGACTTCTAACTCGACATGTTGTANGCCTAGCTCANTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAANCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGTATTTTCTTCCTTTTCAACCCACCCCGGCGTTGTCTGATTGGCTCCCGTTTTGTAAAGCAGTAGCAAGTTAATTAGACGGTGATAATTTCTGTT] [+] EMBL BE530933 [AGCTGAAACCAGGAACAATTGAGACTCTGGGCTCAATACTAGCTGCATCCTGGCAGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCAACCACTCCTGCAAACGGGCAAGGAAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGAGACGGCAAGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTAACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAGACTCATGCTTCGAATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTGTGTTGCAATCCATGGCAAGCAAAGCCTTTTCCCCAGGGAGTAGCCTTGCTCATCTAGTCATCTTATCGTCGGCATTTGCCTGTGCTTGTATTTTCTTCCTTTTCAACCCACCCC ] consensusID : consensus_14210#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [ACCCNTTNGTTCCNCACCGCACCGAGCCAGACTAGCGCACATCGCGTTTCTCCTCGAGGCCGCGAAGAGAGAAGGGGGAGNGAGGACTGAGGNANCGGCGGCGGTAAGAAGTTGAAGGCANACGGCNGANTTGTTGCGNTGTTGGCGGGTTNCTGNTCTCGNACAGCAAGGGCGNCNCGCGNAGNTCTGTGCGGCGNTGNGCGCAGGTCAGTGCAGCGNACGTTCGGTTGNATTTGNCGCTGAGACCTCATNGCGGCGGCACTTTNCGGTGGGANCGNCTCCNCACANCGAGCAGTNNCACTGCACTAAGCTTG] [+] EMBL OSC18521 [ACCCNTTNGTTCCNCACCGCACCGAGCCAGACTAGCGCACATCGCGTTTCTCCTCGAGGCCGCGAAGAGAGAAGGGGGAGNGAGGACTGAGGNANCGGCGGCGGTAAGAAGTTGAAGGCANACGGCNGANTTGTTGCGNTGTTGGCGGGTTNCTGNTCTCGNACAGCAAGGGCGNCNCGCGNAGNTCTGTGCGGCGNTGNGCGCAGGTCAGTGCAGCGNACGTTCGGTTGNATTTGNCGCTGAGACCTCATNGCGGCGGCACTTTNCGGTGGGANCGNCTCCNCACANCGAGCAGTNNCACTGCACTAAGCTTG] consensusID : consensus_14210#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [CGAGNACGTTGGGNGCCTTGCTCATNNNGTCATCTTATCGTCGGCANTTCCCTGTCCTTGCATTTCCTNCCTTTNAAACCCACCCCGGCGTTGTCTGATTGTNTCCCGTTTTGTAAAGCAGTAGCAAGTTAATAAGACGGTGATAATTNCNGTAAACTCTACTGTAAACAACGTTGCTATAGATNCCAGACTC] [+] EMBL OSR00511A [CGAGNACGTTGGGNGCCTTGCTCATNNNGTCATCTTATCGTCGGCANTTCCCTGTCCTTGCATTTCCTNCCTTTNAAACCCACCCCGGCGTTGTCTGATTGTNTCCCGTTTTGTAAAGCAGTAGCAAGTTAATAAGACGGTGATAATTNCNGTAAACTCTACTGTAAACAACGTTGCTATAGATNCCAGACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CCGAGTCGGGTCTCGCATCGCTCTCCTCCGCGAAGAGAGAGGGGGCGAAGATAGAAGGGG 60 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AGGGTCGGAGGGAGGACTGAGGAGGAGGAGGCGGTGCCGGTGACGGCGCACGGCGGCGGC 120 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 GACTGCCTCCTCTCTCGCGGCTAGGGCGTCGGGCTGAGGTTTGGGCGGCGCTGGGCAGAA 180 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 GTTTGGGCGGCGCACGGTGGTTGAGCTTAGCCGCTGAGAGCTCACGGCGGCAGTTGGCGG 240 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CGGGAGCGGCTCCCCACGGCGAGGAGGCGCACGGCAGGAGCTAGACAACGGCGGCGGCAT 300 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AGCAGATCTGGTGCAAGGAGGAAGCTCAGGTGGCAGCAAACAGGAAGCTTTCTCCATTAG 360 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AAGGAATCAAACCGATCGAGAAGGATCAAACCAAGAAGAGAAAGGATCCTACATAGTATC 420 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 TTGATACTGGTTACCTTGGCTAAGAGGACCGATCGGACTATTGGAGAGGAGGGGCTAAGT 480 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CGTCTCCACAACAGTGAACTGTCTCCGAGCCAAAACAGAACGAACGCCCAAACAGGCAAA 540 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CCACGAACTCGAACCCTAGAAACCCTGACCATGGACTCGGGAGGCGGAGGAGGGGCATCG 600 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CACAAGGCAGCGTCGGGCTCCGCACCCTCGGGGGCGGCGGCCGCGAACCCCACGGCGATG 660 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 ------------------------------------------------------------ consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGAGCGC 720 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 --GGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTA 58 consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 CAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTA 780 consensus_14210#1 ------------------------------------------------------------ consensus_14210#4 --------------------------------------------------------ACCC 4 consensus_14210#2 AAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGG 118 consensus_14210#3 ---------------------------------------------------------AGC 3 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AAGGGTTTTGAATCATTCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGG 840 consensus_14210#1 ----------------------------------------CGTTTCTCCTCGAGGCCGCG 20 consensus_14210#4 NTTNGTTCCNCACCGCACCGAGCCAGACTAGCGCACATCGCGTTTCTCCTCGAGGCCGCG 64 consensus_14210#2 AAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCG------ 172 consensus_14210#3 TGAAACCAGGAACAATTGANACTCTGGGCTCAAT-ACTAGCTGCATCCTGGCAG------ 56 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCATCGGTTACATCTCCAGCGGTCGAT 900 consensus_14210#1 AAGAGAGAAGGGGGAGGGAGGACTGAGGCAGCGGCGGCGGTAGCAG--TGAAGGCACACG 78 consensus_14210#4 AAGAGAGAAGGGGGAGNGAGGACTGAGGNANCGGCGGCGGTAAGAAGTTGAAGGCANACG 124 consensus_14210#2 ----------------------GTCGATGAACATATGGCT-GGACGAGATGATGGAAGAG 209 consensus_14210#3 ----------------------ATGGAAGANAATATGGATCAGGTCGTTCGAAAGGTGCA 94 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 GAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGGTGCA 960 consensus_14210#1 GCGCATG-GTGGCAGGTGGTGGCGGCTGCCTCCTCTCGCACAGCAAGGGCGCCGGGCGGA 137 consensus_14210#4 GCNGANTTGTTGC-GNTGTTGGCGGGTTNCTGNTCTCGNACAGCAAGGGCGNCNCGCGNA 183 consensus_14210#2 AATATGGATCAGGTCGTTCGAAA---GGTGCAACCACTCCTGCGTCGCCCTGGAGGGAGA 266 consensus_14210#3 ACCACTCCTGCAAACGGGCAAGG---AAAACCAAANAAGGGAGGTCGCCCTGGAGGGAGA 151 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 ACCACTCCTGCAAACGGGCAAGG---AAAACCAAAGAAGGGAGGTCGCCCTGGAGGGAGA 1017 consensus_14210#1 GGTCTGGGCGGCGCTGGGCGGAGGTCAGGGCAGCGCACGG-CGGTTGGATTTGGCGCTGA 196 consensus_14210#4 GNTCTGTGCGGCGNTGNGCGCAGGTCAGTGCAGCGNACGTTCGGTTGNATTTGNCGCTGA 243 consensus_14210#2 GACGGCA-AGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTA 325 consensus_14210#3 GACGGCA-AGAGAATACNGCCATCAAATGATCCAGATCTGGACGACGAANAGGACTTCTA 210 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 GACGGCA-AGAGAATACGGCCATCAAATGATCCAGATCTGGACGACGAAGAGGACTTCTA 1076 consensus_14210#1 GACCTCATGGCGGCGGCACTTGGCGGCGGGAGCGGCTCCCCACAGCGAGGAGGCGCACGG 256 consensus_14210#4 GACCTCATNGCGGCGGCACTTTNCGGTGGGANCGNCTCCNCACANCGAGCAGTNNCACTG 303 consensus_14210#2 ACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAG-ACTCATGCTTCG 384 consensus_14210#3 ACTCGACATGTTGTANGCCTAGCTCANTGATGATTTAACCTTGCTAG-ACTCATGCTTCG 269 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 ACTCGACATGTTGTAGGCCTAGCTCAGTGATGATTTAACCTTGCTAG-ACTCATGCTTCG 1135 consensus_14210#1 CAG-GAGCTGGGCGACGCCGGTGGCATAGCAGATCTGGTGCAAGGAGCAAGGACATACCA 315 consensus_14210#4 CACTAAGCTTG------------------------------------------------- 314 consensus_14210#2 AATCATTCTTTCTGTATTGGAATTTTTTTT-AATCTTG-----TGTTGCAATCCATGGCA 438 consensus_14210#3 AATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTG-----TGTTGCAATCCATGGCA 324 consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 AATCATTCTTTCTGTATTGTAATTTTTTTTTAATCTTG-----TGTTGCAATCCATGGCA 1190 consensus_14210#1 GGCTGCACCAAATTTATTAAGACTGGCTTGCAAAATGAAGAGCTACTTGAGAAGATGTTT 375 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 AGCAAAGCCTTTTCCC-AGGGAGTAGCC-TTGCTCAT-----CTAGTCATCTTATCGTCG 491 consensus_14210#3 AGCAAANCCTTTTCCCCAGGGAGTAGCC-TTGCTCAT-----CTAGTCATCTTATCGTCG 378 consensus_14210#5 -----------CGAGNACGTTGGGNGCC-TTGCTCAT-----NNNGTCATCTTATCGTCG 43 consensus_14210#0 AGCAAAGCCTTTTCCCCAGGGAGTAGCC-TTGCTCAT-----CTAGTCATCTTATCGTCG 1244 consensus_14210#1 GAAGATATCCGCAATACCGGTGCTAACCATTGGTCTTTGGGGCAAGGCACCATACCAACA 435 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 GCATTT-CCTGTGCTTGTATTTTCTT---CCTTTTCAACCCACCCCGGCGTG--CTGATT 545 consensus_14210#3 GCATTTGCCTGTGCTTGTATTTTCTT---CCTTTTCAACCCACCCCGGCGTTGTCTGATT 435 consensus_14210#5 GCANTTCCCTGTCCTTGCATTTCCTN---CCTTTNAAACCCACCCCGGCGTTGTCTGATT 100 consensus_14210#0 GCATTTGCCTGTGCTTGCATTTTCTT---CCTTTTCAACCCACCCCGGCGTTGTCTGATT 1301 consensus_14210#1 GCCATGGATGCATTTCGTGATTACCTAGCCGGTCGTATTGCAGGTTGATGGACATATATC 495 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 GGCTCCG--TTTGTAA-GCAG--ACAAGT--AATTAGACGG-GATAATTCTGTACTCTAC 597 consensus_14210#3 GGCTCCCGTTTTGTAAAGCAGTAGCAAGTT-AATTAGACGGTGATAATTTC-TGTT---- 489 consensus_14210#5 GTNTCCCGTTTTGTAAAGCAGTAGCAAGTT-AATAAGACGGTGATAATTNCNGTAAACTC 159 consensus_14210#0 GTCTCCCGTTTTGTAAAGCAGTAGCAAGTT-AATTAGACGGTGATAATTTCTGTTAACTC 1360 consensus_14210#1 GTATTTTGTGTTGTTTTGCGGTCTTATGCTCTATCTTTCGATGATAATGGTACTAGTTAT 555 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 TGGAACAACGTGTATAGATTCAGACTCAGTGAGACGAGATGAGACTCAGCGAGACGAGAT 657 consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 TACTGTAAACAACGTTGCTATAGATNCCAGACTC-------------------------- 193 consensus_14210#0 TACTGTAAACAACGTTGCTATAGATTCCAGACTCCAGTGAGACGAAAAAAAGACTCCAGC 1420 consensus_14210#1 TATTACTAAATATATGTCATGCAACAACTTTAATTTTTACTTTATTTTGGAGTACCAATC 615 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 TGGT-------------------------------------------------------- 661 consensus_14210#3 ------------------------------------------------------------ consensus_14210#5 ------------------------------------------------------------ consensus_14210#0 GAGACGAGAATCTGGATTGGCCGAANAAAA------------------------------ 1450 consensus_14210#1 ATATAATGATTGATTGAATGTGTTCCCCCCTCCCTGGCAATGAATGGCAGTGGGTAGCTA 675 consensus_14210#4 ------------------------------------------------------------ consensus_14210#2 -------------- consensus_14210#3 -------------- consensus_14210#5 -------------- consensus_14210#0 -------------- consensus_14210#1 AAAAAAAAAAAAAA 689 consensus_14210#4 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||