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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2364 fasta sequence
[CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAGCGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGACTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGACCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAATCTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCTAGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTCTTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTATAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT-CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC-TTTAC-AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA-GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT-AAAGGATT-GGAGGTTATC-AGCAAAGTTGGTGA-CCTCG-TGGGAATCAAATA-CTTCCCA-GTGGAACAT-GAAAAGAC-TGCATCTGTTGAG-AAACTGAAGAAGCTTCAATGAAC-ACC-TA-CAACCA-GAAGAAATAT-ACT-GGGTGATCTAGGCAGTGT-GCCATGCCTCGG-TTCGG-CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT-AGACA-CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC-GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA]
[+] EMBL AK120617 [CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAGCGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGACTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGACCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAATCTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCTAGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTCTTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTATAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAGGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCTTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGT ]
[+] EMBL CB620301 [ ATTGACGACCTCTTCCTCTTCT TCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTACAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATCGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGGTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGCAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAAT ]
[+] EMBL OSS0877A [ ACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCA GATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGGAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGG ]
[+] EMBL CA766093 [ ATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTGAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGGTACTGGTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTAGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCNTATTAAAAGGATTGGGAGGNTATCAAGCAAAGNTGGGGANCCTCGNGGGGAATCAAATACCTTNCCA GNGGAACATGGAAAAGAC TGCATCTGGTGAA AAACTGGANAAGCTTCAATGGACNCCC TACCANCCA GAAAAAATTT CCTGGGGNGATCTAGGCAGGGG GGCCTGCCTCGG TTCGG CTt ]
[+] EMBL CF323865 [ TGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCA ]
[+] EMBL CA765770 [ GTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCT ]
[-] EMBL CB620302 [ AGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCCGGTTAGGGTGATCAAGTGATTAAG ]
[+] EMBL CA998917 [ TTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCTTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGGAGT AAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCG ]
[+] EMBL CB000787 [ TCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTG ]
[+] EMBL BI813411 [ ggtTCATG CTATCATGCTTTTACAAATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGA GCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCCAAACACAACAC ATGATAAGAC CTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAAaaaaaaaa ]
[+] EMBL BI807700 [ GATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTT GTGACCCTCG TGGGAATCAAATA CTTCCCACGTGGAACAT GAAAAGACGTGCATCTGTTGAGAAAACTGAAGAAGCTTCCATGAAC ACCTTA CCACCATGAAGAAATATAACT GGGTGATCTA GCAGTGTGGCCATGCCTCGGTTTCGGCCTCATGTGCCTCGGACCC TTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCC AAACAC ACAC ATGATAAGACACCTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGC ACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAA ]
[+] EMBL AU033000 [ AGCTTGTATTATCATCCATCATNGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGNGTTCAGNGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GNGTAANGTGTCTGAAATCATGTNGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCNACGTNNGTTGCATCGATTGTGTGTGANGTAAGCTTCACTCATNGTGTGNGGTCTGGTTGCTGTGATCAAGTGATTAAGNGAAAAAATGTTGTTAANAA ]
[+] EMBL BI808855 [ TGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA]
consensusID : consensus_14214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTGGGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACCTGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTGGTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCCCTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGTTGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA]
[-] EMBL CA763087 [GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTGGGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACCTGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTGGTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCCCTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGTTGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA]
consensusID : consensus_14214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[GGAAAAGTTGGCCTTTAGGAACCTTGTTACCCAGCCTTTGNTATATTAATTCCAATCCCATTCCATTANTTCCCAAAACNCCAACACCAAATTGAATAGACACTGTTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAA]
[+] EMBL AU088709 [GGAAAAGTTGGCCTTTAGGAACCTTGTTACCCAGCCTTTGNTATATTAATTCCAATCCCATTCCATTANTTCCCAAAACNCCAACACCAAATTGAATAGACACTGTTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14214#0 CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAG 60
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGA 120
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGA 180
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAAT 240
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCT 300
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 AGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTC 360
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTA 420
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCG 480
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTC 540
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 AGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGAC 600
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 GCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTC 660
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCA 720
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCAT 780
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCC 840
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 GCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGT 900
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 ACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTG 960
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 GTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAAC 1020
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAAC 1080
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACAT 1140
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 AACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGT 1200
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 ACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGG 1260
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 GAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATAT 1320
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTA 1380
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGA 1440
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGC 1500
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCA 1560
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 ATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATT 1620
consensus_14214#1 ------------------------------------------------------------
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CGAGAGAACAGCAATTTCTTCCGTTCAGA--GCTTCAGAAAATGGGTTTTGAAGTTCTTG 1678
consensus_14214#1 ----GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTG 56
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 GAGAC--AATGACTCGCCGG-TCATGCCTAT-CATGCTTTACAATCC-TGCTAAAATACC 1733
consensus_14214#1 GGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACC 116
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACT-GTTGCATTTCCTG 1792
consensus_14214#1 TGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTG 176
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CTACACCACTACTGCTTGCCAGAGCTAGGATATGTATCTCAGCTTCCCACTCAAGGGAAG 1852
consensus_14214#1 GTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAG 236
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 ATCTTATTAAAGGATTGGAGGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACT 1912
consensus_14214#1 ATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACT 296
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 TCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACAC 1972
consensus_14214#1 TCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCC 356
consensus_14214#2 ------------------------------------------------------------
consensus_14214#0 CTACAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTC 2032
consensus_14214#1 CTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTC 416
consensus_14214#2 --------------------------------------------------GGAAAAGTTG 10
** * *
consensus_14214#0 ATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCT 2092
consensus_14214#1 ATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCT 476
consensus_14214#2 GCCT--TTAGGAACCTTGTTA-----CCCAGCCTTTGNTATA--TTAATTCCAATCCCAT 61
* * *** **** * * * * * ** * *** ** * *
consensus_14214#0 TGTATTATCATCCATCATAGTCCAAAACACAACACAATGATA-GACACTGTTTT-GTCGA 2150
consensus_14214#1 TGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTT-GTCGA 535
consensus_14214#2 TCCATTANTTCCCA--AAACNCCAACACCAAATTGAATA----GACACTGTTTTTGTCGA 115
* **** *** * * **** ** ** *** *** ******* *****
consensus_14214#0 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 2210
consensus_14214#1 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 595
consensus_14214#2 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 175
************************************************************
consensus_14214#0 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCA-GT 2269
consensus_14214#1 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGT 655
consensus_14214#2 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCA-GT 234
********************************************************* **
consensus_14214#0 TGCATCGA-TTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATC 2328
consensus_14214#1 TGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA---------------------- 693
consensus_14214#2 TGCATCGA-TTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATC 293
******* *************** * * *
consensus_14214#0 AAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA 2364
consensus_14214#1 ------------------------------------
consensus_14214#2 AAGTGATTAAGCGAAAAAATGTTGTTAA-------- 321
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||