These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1875 fasta sequence [CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA-GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT-GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT-GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA-TTGAGAT-CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT-TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTGCCAACCAATCACTTTCAAATCAAAAAAAN] [+] EMBL AK107911 [CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGCCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAAC ] [+] EMBL CF280850 [ ATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATAGGGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTATGGGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTATGGGTTTAAGACAAACCT ] [+] EMBL AK103258 [ ACCGCTGCGGTCTCGGAAACCCTAGCTCTCGCCCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACCGCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGACGACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAACACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGGTCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTT ] [+] EMBL AU081256 [ ATCGAGAACCAGTACTACAACTCCAAAGGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGA ] [+] EMBL AU081257 [ ACAACTCCAAAGGTCTGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGANCCTGAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATA GGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAANAA ] [+] EMBL D43561 [ GACACGTAACTACAGTGAGAAATGTATAAACAACATTAT GGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATTTGAGGTCCCAAAT ] [+] EMBL AU032236 [ CACTGAAAGCACTTGAAGAGGCAAAGAATGAGAGATTAT GGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAAAGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTA TTGAGAT CCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACANAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAGGCATTCAAAAACTATGATGAAGCTTGCAATCCGCGGGGAATTCAATGCCTGAAATATCTTGTTCTTGC ] [+] EMBL AK063907 [ ACAGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTAT TAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGT ] [+] EMBL BI806761 [ AGAAGAACAATAATGGACGATCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATGTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACC AACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAG TCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTAaaaa ] [+] EMBL AU031587 [ AAGCCATAGACAAGTGGNATACTCAGCTGAAGNACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGNGATAGCNGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGNGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATNGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCNTCTGAAAaaaa ] [+] EMBL CB661975 [ AATACTCCGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAATGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCC ] [+] EMBL AU081361 [ CGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTGCCAACCAATCACTTTCAAATCAAAAAAAN] consensusID : consensus_14220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence [GAGACAAGGGGGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGACCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGGTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAGGTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCGTCATTACATTTGANANAGGCTCTTGGATAGGTA] [+] EMBL CA764397 [GAGACAAGGGGGGGCAGATGCTGCAACTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATGGGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGACCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGGTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAGGTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCGTCATTACATTTGANANAGGCTCTTGGATAGGTA] consensusID : consensus_14220#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [ACTAGTAACCGCTGTGTGACCACGGTCGAANGGGAATGAGCGAAATTATCCCATAGCCACTAGTGACCACAGCTGGAATAACTCAGCCTGAAGAGACATTCCGTATCCACATACGGTGTCCACAACACGAGGTTGGGTGAGACGAGATATGCCACGGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCTTGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACATTACACTTTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA] [+] EMBL BQ909012 [ACTAGTAACCGCTGTGTGACCACGGTCGAANGGGAATGAGCGAAATTATCCCATAGCCACTAGTGACCACAGCTGGAATAACTCAGCCTGAAGAGACATTCCGTATCCACATACGGTGTCCACAACACGAGGTTGGGTGAGACGAGATATGCCACGGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCTTGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACATTACACTTTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA] consensusID : consensus_14220#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CATGAAAATTATTAGTAACATGGAACTTTGGTATATACTCGTGCTATTTTAGGAAGTTGCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCCCAAACNAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGTTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTC] [+] EMBL AU081351 [CATGAAAATTATTAGTAACATGGAACTTTGGTATATACTCGTGCTATTTTAGGAAGTTGCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCCCAAACNAGGTGATTCCAGTTCAATTGAAATCATGTGCGCTTAATCGTGCAGACCCTATGCTGTTCCTCACGGAGGTCTAGTTTTTTGTGAAATTTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATGTAGGAGCTAAATTTCCCAGAAAAGGATGTCGAGCAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CTCTCCGCATCCGCCTCCGCAACTGCAAACCGCTGCGGTCTCGGAAACCCTAGCTCTCGC 60 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CCCCTCCCCTCCCTCTCCGCCCGTCGCCGCGCGGGTCGCCTCCTCCTCTCCGCCGCCACC 120 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GCCGCCGCTGACATGGGCTCCGATGCGGACATGGAGGATTACGGGTTCGAGTACTCCGAC 180 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GACGAGCCGGAGGAGCAGGATGTTGACATCGAGAACCAGTACTACAACTCCAAAGGTATG 240 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGCCT 300 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GAAAAGGCTGAATGGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTT 360 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GGGAAGTACAAAGAAATGATGGATGCCTATAGGGAGATGTTGACATACATCAAATCTGCT 420 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GTGACACGTAACTACAGTGAGAAATGTATAAACAACATTATGGATTTTGTCTCCGGATCA 480 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCACTTGAA 540 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GAGGCAAAGAATGAGAGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTT 600 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GACATGGGGGAGTATGGCCGGATGAGCAAGATACTGAAGGAGCTGCATAAATCTTGTCAA 660 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 AGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATT 720 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GAGATCCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGAACTATATACAAAA 780 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGGTATAATTCGTGAATGT 840 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACTGATTTCTTTGAA 900 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGAAATATCTT 960 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTTGATGGGCAAGAGGCTAAG 1020 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ------------------------------------------------------------ consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAG 1080 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 ----------------------------------GAGACAAGGGGGGGCAGATGCTGCAA 26 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 AATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACAGAAGAACAATAATGGACGAT 1140 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 CTGATTTCTTTGAAGCATTCAAAAACTATGATGAAACTGGCAATCCGCGGAGAATTCAAT 86 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTC 1200 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 GCCTGAAATATCTTGTTCTTGCAAATATGTTGATGGAATCTGAAGTGAATCCCTTCGATG 146 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 AAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAGGAGCTAAATTTC 1260 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 GGCAAGAGGCTAAGCCGTACAAAAATGATCCTGAGATCCTCGCCATGACAAACTTGATTG 206 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CCAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGC 1320 consensus_14220#2 --------------------------------ACTAGTAACCGCTGTGTGA--CCACGGT 26 consensus_14220#1 CAGCATATCAGAAGAATGACATCATGGAATTTGAAAAGATTCTAAAGAGCAACA-GAAGA 265 consensus_14220#3 ----------------------------------------------------CATGAAAA 8 consensus_14220#0 CACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGGTCGAAGGGAATGAGGAAA 1380 consensus_14220#2 CGAANGGG---AATGAGCGAA--ATTATCCCATAGCCACTAGT-GACCACAGCTGGAATA 80 * * * consensus_14220#1 ACAATAATGG-ACGACCCTTTCATCCGTAATTATATTGAGGAC-CTATTGAAGAAC---- 319 consensus_14220#3 TTATTAGTAACATGGAACTTTGGTATATACTCGTGCTA------TTTTAGGAAGTT---- 58 consensus_14220#0 TACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAAC 1440 consensus_14220#2 ACTCAGCCTGAAGAGACATTCCGTATCCA--CATACGGTGTCCACAACACGAGGTT---- 134 * * * * consensus_14220#1 --------ATCAGAACTCAAGTTCT--GCTCAAGCTTATTAAGCCATATACT--AGAATC 367 consensus_14220#3 --------GCAAGAAATATAGTTTGAAGCTTGATCTTTTTCTGTCGTGTGCC--CAAACN 108 consensus_14220#0 AGAGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTG-CAC-TGCGCTTGGCACC-TGCT 1497 consensus_14220#2 -GGGTGAGACGAGATATGCCAC-GGATGCCTGGGCTGGCACCTGCGCTTGGCACCCTGCT 192 *** ** ** * * consensus_14220#1 AGGATTCCATTCATTTCACAGGTGATTCCA-------GTTCAATTGAAATCATGTGCGCT 420 consensus_14220#3 AGG-------------------TGATTCCA-------GTTCAATTGAAATCATGTGCGCT 142 consensus_14220#0 TGCAC-GTTTTGTTGTGGTGGGTAAATGCA-GCGAGTGTTTGG-TGCGTGCAT-TACA-T 1552 consensus_14220#2 TGCACCGTTTTGTTGTGGTGGGTAAATGCACGCGAGTGTTTGGCTGCGTACAT-TACACT 251 * * * * ** *** ** *** * * * consensus_14220#1 TAATCGTGCAGACCCTATGCTGTTCCTCACGGAG---GTCTAGGTTTTTG----TGAAAT 473 consensus_14220#3 TAATCGTGCAGACCCTATGCTGTTCCTCACGGAG---GTCTAGTTTTTTG----TGAAAT 195 consensus_14220#0 TTGAGAT-AGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTAC 1611 consensus_14220#2 TTGAGATTAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAAACATGGTAC 311 * * * * * * * * * **** * * ** ** * consensus_14220#1 TTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCACG 533 consensus_14220#3 TTGCTTTCGTACAGTGTACAAGATGCCTTGTCATCGATTGTTCTGTCAATGTTTTGCATG 255 consensus_14220#0 TCTTTTGCGCGCCATGTG-AAGATGC--TGGGATT--TTGTCCTGAACTGAATCTATCTG 1666 consensus_14220#2 TCTTTTGCGCGCCATGTG-AAGATGC--TGGGATT--TTGTCCTGAACTGAATCTATCTG 366 * ** ** * *** ******* ** ** **** *** * * * consensus_14220#1 TAGGAGCTAAATTTCCCAGAA----AAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCT 589 consensus_14220#3 TAGGAGCTAAATTTCCCAGAA----AAGGATGTCGAGCAGCTC----------------- 294 consensus_14220#0 CAAATTCCAACCCCTCTGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTT 1726 consensus_14220#2 CAAATTCCAACCCCTCTGAAACTATACTAGCGTCAAAAAAAAAA---------------- 410 * * ** * ** * *** * consensus_14220#1 GGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGNTACTAGAACGTGGTGACAG 649 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 GGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAGAGAATGTTTGGTTCCGTGTAAAAT 1786 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 GTCGAANGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACAT 709 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 ATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGTGTTG 1846 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 CTACCAAACGGNGTCAACAGAGTTGGGTGAGANAGATAGCAGGATGCCTGGGCTGCACTG 769 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 CCAACCAATCACTTTCAAATCAAAAAAAN------------------------------- 1875 consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 CGCTTGGCACCTGCTTTGCACGNTTTGNTGGGGNGGGTAATGCAACGAGNGGTTGGNGCG 829 consensus_14220#3 ------------------------------------------------------------ consensus_14220#0 ------------------------------------------------------------ consensus_14220#2 ------------------------------------------------------------ consensus_14220#1 TCATTACATTTGANANAGGCTCTTGGATAGGTA 862 consensus_14220#3 --------------------------------- consensus_14220#0 --------------------------------- consensus_14220#2 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||