These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2048 fasta sequence [CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGGGTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAGGGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACAATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGCCGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGG-ACAGCCAGCTGCAGGTGTTCGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAGGGCTGACATCTTCCATCTCCTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCCTTTGGCTCGGTGGATTTAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGAGCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGACGGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGCCGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAAGATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCACAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGACTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGAGGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTGCAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGAGCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACTTTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAAACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAGCTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCTGGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATATCCCCTCTGAAA] [+] EMBL AK106988 [CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGGGTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAGGGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACAATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGCCGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGG ACAGCCAGCTGCAGGTGTTCGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAGGGCTGACATCTTCCATCTCCTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCCTTTGGCTCGGTGGATTTAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGAGCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGACGGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGCCGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAAGATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCACAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGACTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGAGGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTGCAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGAGCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACTTTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAAACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAGCTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCTGGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATATCCCCTCTGAAA] [+] EMBL CA759329 [ GAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAGTAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTCCAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCGGAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTACGACATGGCCGATTTCG ] [+] EMBL CA753259 [ GCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAACCAGCTGCAGGTTCTTCCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGCTCAAAAGATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGCCAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGCAACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAGGAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACATTCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGCAAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCCTTCAGCCGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCTGATATTCCAGCTGAGGGCCACCCTGAACGAGCAGATGGCGGAACACCCACCTGCA GTGTCCGT AACGGCCCAATGGCGCACAACAAAAACCTGCT AGCCTCAA GGCG CAATGCCA TGCCGACAT TTTCAT TCCNCCGTTGCGT GGGGCTCCCCCCt ] consensusID : consensus_14223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 675 fasta sequence [GGCAGTGCAGCTAAATTACCTCACT-AAGGGA-ATAGCTTGGGCCG-GT-TGGCCTCCGCCCCGGCGG-CCCGTCCA-GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA-GGCCGTTCGA-GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA-GGGACTCCGCCGCCGCCGCCA-ACCCCGCCTCCG-ATCCCAGCCTCTTCG-A-A-TCCGTG-ACCGC-GGTGTGCGAGA-TGTGGA-GGTCAA-GGG-AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG-ATGAGCAGC-A-GGATGG-TA-AATGCA-AG-AAGCCAAAGGG-AAGTAT-A-AGGTTGT-ACT-ATTGGGCTTTTCATGCATCAAG-AGGTTGT-ATGGAGG-ATCCTATTTGATCG-ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGGAAGGGTGCAGCAACATCAGAATGGC] [+] EMBL BU672958 [GGCAGTGCAGCTAAATTACCTCACTAAAGGGA ATAGCTT GGCGC GT TGGCCTCCGCCCCGGCGG CCCGTCCA GCTCCGCCGGCGCCGGGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCGGGTTCGCCGCCCTAAGTTCGGA GGCCGTTCGA GGTAGGTCTCCGTCCGAGTTCTACCTCAGCGCCCTCTCCGGCGCATGCA GGGACTCCGTCGCCGTCGACACACCCCGCCTCCGCATCCCAGGCTCTTCG ACA TCCGTGTAGCGT GGTGTGCGAGA TGTGGA GGTCAA GGGCAGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTGCATGAGCAGCAA GCATGG TA AATGGC CG AAGCCAACGGG AAGTAT C AGGTTGT ACT AATGGGCTATTCATGCATCAAG AGGTAGT ATG ] [+] EMBL CB967071 [ TCACT AAGGGA ATAGCTTGGGCGC GT TGG CTCCG CCCGGCGG CCCGT CA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ] [+] EMBL BU672990 [ TCACT AAGGGACATAGCTTGGGCCGTGT TGGCCTCCGCCCCGGCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGTACTCCGCCGCGGCCGCCA ACCCCGACTCCG ATCCGAGCCTCTTCG A ACTCCGTG ACCGCAGGTGGGCGAGACTGTGGACGGTCAACGGG A ] [+] EMBL CB964695 [ AGGGA ATAGC GGGCCG GT TGGCCTCCG CCCGGCGG CCCGTCCA GCTCCG CG CGCCGCGT CACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ] [+] EMBL CB967106 [ CTTGGGCGC GT TGGCCTCCG CCCGGCGG CCCGT CA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCGAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCGGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATCAAGAAGGAAGGAAGCAACCGTGGGAAGGGTGCAGCAACATCAGAATGGC] [+] EMBL CB967286 [ TTGGG CG GT TGGCCTCCGCCCCGGCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ] [+] EMBL CB964770 [ gcGGGCCG GT TGG CT CGCCCCGGCGG CCCGT CA GCT CGCCGCCGCCGCGT CACCTTCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA CGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC ACGGCTGG TACACTGC AG AAGCCAAAGGG AAGTAT A CGGTTGT ACT ] [+] EMBL BU673692 [ GGCCT GTGTGG CTCCGCCCCGGCGG CCCGTCCA GCTCCGCCG CGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ] [+] EMBL BU673486 [ GGCCTCCGCCCCGGCGGCCCCGTCC GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTCAGAAGGAAGGAAGCAACAGTGGG ] [-] EMBL BU672821 [ GCCCCGTCGGCCCCGTCCA GCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGAGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGCGAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGA GGCCGTTCGA GGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCA GGGACTCCGCCGCCGCCGCCA ACCCCGCCTCCG ATCCCAGCCTCTTCG A A TCCGTG ACCGC GGTGTGCGAGA TGTGGA GGTCAA GGG AGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTG ATGAGCAGC A GGATGG TA AATGCA AG AAGCCAAAGGG AAGTAT A AGGTTGT ACT ATTGGGCTTTTCATGCATCAAG AGGTTGT ATGGAGG ATCCTATTTGATCG ATTGTTCCCTTGCCTAACTCTGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGG ] [+] EMBL BU673445 [ CCCGGCGG CCCGTCCACGCTCCGCCGCCGCCGCGT CACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTTGCTTGCTGCTGGCGCTCGAGGGGAACCCTATCCCTAGCCTAGCAGTGCGTGCGTGCGAGCGAGCGCCGCGGGGGCGTCCCGGGGGCGGGCGCGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGACGGCCGTTCGACGGTAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCACGGGACTCCGCCGCCGCCGACA CCCCCGCCTCCG CTCCCCGCCTCTTCGCA C TCCGTG ACCGC GGTGTGCGACA TGTGGA GGTCAC GGG AGGCAGGGACGAGATGGTGGCACGGACATACCCGGTG ATGAGCAGC A GGATGGATA AAAGCACAGCAAGCCAAAGGGCAAGTATCACAGGTTGTCACTCATTGGGCTTTTCATGCATCCAGCAGGTTGTCATGGCGGCATCCTATAGCATCGCATT ] consensusID : consensus_14223#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GGAATACTGGGCCTGGTTGGCTCCGCCCGGCGGCCCGTCACTCCGCTGCGCGCGTCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCCCTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG] [+] EMBL CB964534 [GGAATACTGGGCCTGGTTGGCTCCGCCCGGCGGCCCGTCACTCCGCTGCGCGCGTCACCTCCTTCTCTCTCCTCGCTTGCGCTTGCTGCTCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCCCTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CCAAACGAAAAGCTTCAGCCCCCTTCTTTATAGCCTTTTGTTACAAGTATAAAAACAAGG 60 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GTGCAAACAGAAGTCAGTTTTGCCATTAATGTCTGATTTTGTATCTTTTGCTAGCAAGAG 120 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GGGATGTGCATAGTGTGAGGAGAGAGAGGTACAACAAGAAGAGAGAAATTAAGAGAGCAG 180 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 TAGTAGAGGTGTGCTGCAGGAGGATGGTCAGGGCCTTCATAAGGGCTTCATGGGGGGCTC 240 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CAGAGAGGAAGATCGTCAGCACCACAATCACCTCCCTTCTGAGCTCCCCCTCGGCTTCCG 300 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GAGCTCCTCACCGACGACGATGATCGCCTCTTCCTCCATGAGCAAGGAATCGAGCAACTA 360 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CGACATGGCCGATTTCGATCAAGCTTCGCTTTTTCTCTACCTAGACAGTCATGATCAACA 420 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 ATCCATCCAAGAACAACGACAAACTCTGAACATCTTCCCTTCCCAGCCGATGCATGTAGC 480 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CGACCCAGCTCATGAAGCAAAGAGTGCTGGGGTAGCCATGGCCATGCTTCCCAATGGCAA 540 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CCAGCTGCAGGTTCTTGCTTCTCATCCCAGCAAGAAGCCTGATCAGCAAGGTGGTCAAAA 600 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GATTAATTCCAGTGTCCCTACTAATCCACCTGGCCCTAATCTTCCCTTGCCTAACTCTGC 660 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CAAGGATAACAAGAATAGTAGCCTCATTAAGAAGGAAGGAAGCAGCAGTGGGAAGGGTGC 720 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 AACAACATCCAATGATCCAGAAAGAGAAGGAAGGAGGACACTAGACCCTAAGACACTGAG 780 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GAGGCTTGCACAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTTAGGAAGAAGGCTTACAT 840 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 TCAGCAGTTGGAGTCAAGTAGGATTAGGCTAAGCCAGCTTGAACAACAAGTTCACGTGGC 900 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 AAGAGTACAGGGTGCTATGCTGGGTGCTGGAGATCAGCACCAGGGCCTTCCTTCTGGCCC 960 consensus_14223#1 -----------------------------------------------GGCAGTGCAGCTA 13 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 TTCAGCTGCATCGTTGTTTGACCTGGAGTATGGGAGATGGGTGGAGGAGCACAGCAAGCT 1020 consensus_14223#1 AATTACCTCACTAAGGGAATAGCTTG--GGCCGGTTGGCCTCCGCCCCGGCG-GCCCGTC 70 consensus_14223#2 ---------------GGAATA-CTGG--GCCTGGTTGGC-TCCGCCC-GGCG-GCCCGTC 39 consensus_14223#0 GATATTCCAGCTGAGGGCAGCCCTGAACGAGCAGATGGCGGACAGCCAGCTGCAGGTGTT 1080 ** * ** * * **** * ** * * ** consensus_14223#1 CAGCTCCGCCGCCGCCGCGTCCACCTCCTTCTCTCT---CCTCGCTTGCGC--TTGCTGC 125 consensus_14223#2 --ACTCCGCTGCG--CGCGTC-ACCTCCTTCTCTCT---CCTCGCTTGCGC--TTGCTGC 89 consensus_14223#0 CGTCAACGGCGCGATGGCGCAGCACGACGAGCTGCTGAGCCTCAAGGGCGCCATTGCCAG 1140 * ** ** *** * * ** **** **** **** consensus_14223#1 TCTCTCTCCCTCCCATCTCGCCCT-TGCTTGCTGCTGGAGCTCGAG-GGGAACCCTATCC 183 consensus_14223#2 TCTCTCTCCCTCCCATCTCGCCCTATGCTTGCTGCTGGAGCTCGAGTGGGAACCCTATCC 149 consensus_14223#0 GGCTGACATCTTCCATCTC-CTCTGTGGCGTCTGGGCTACCCCCGCCGAACGCTGCTTCC 1199 ** ******* * ** ** *** * * * * * *** consensus_14223#1 CT-AGCCTAGCAGTGC-GTGCGTGCG-AGCGAGCGCCGCGGGGGCGTCCCGGGGGAGGGC 240 consensus_14223#2 CTTAGCCTAGCAGTGCTGTGCGTGCGCAGCGAGCGCCGCG-------------------- 189 consensus_14223#0 TTTGGCTCGGTGGATT--TAGACCCTCTGAGGCCATCAAGGTGATGCTTAAGCAGGTGGA 1257 * ** * * * * * * * * * consensus_14223#1 GAGGGCGTGCGCCGCCGATCCGATCCGCTTCGCCGCCCTAAGTTCCGAGGCCGTTCGAGG 300 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GCCGTTGTCGGAGGGGCAGCTGATGAGCATCTACGAGCTCCAGCAAGCGGCGAAGGGGAC 1317 consensus_14223#1 TAGGTCTCCGTCCGACTTCTACCTCAGCGCCCTCTCCGCCGCATCCAGGGACTCCGCCGC 360 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GGAGGACGCCCTCAGCCACGCCATGGACGGCCTCCAGCAGTCGCTCTCCGACACCGTCGC 1377 consensus_14223#1 CGCCGCCAACCCCGCCTCCGATCCCAGCCTCTTCGAATCCGTGACCG-CGGTGTGCGAGA 419 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CGCCCCTGACGTCGCCGCCGCCGGCGGCTTCATGGGGCACATGTCCCTCGCCATGAACAA 1437 consensus_14223#1 TGTGGAGGTCAAGGGAGGCAGGGACGAGATGGTGGCACGGACATTCCCGGTGATGAGCAG 479 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GATCTCCGCTATGGAGGACATCGTCAGGCAGGCAGATGGCCTGAGGCAGCAGACCCTGCA 1497 consensus_14223#1 CAGGATGGTAAATGCAAGAAGCCAAAGGGAAGTATAAGGTTGTACTATTGGGCTTTTCAT 539 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGA 1557 consensus_14223#1 GCATCAAGAGGTTGTATGGAGGATCC-TATTTGATCGATTGTT---CCCTTGCCTAACTC 595 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CTACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGA 1617 consensus_14223#1 TGTCAAGGATAACAAGAATAATAGCCTCATTAAGAAGGAAGGAAGCAACAGTGGGAAGGG 655 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GGGGCCGGCAATGTAGAATAAGTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTG 1677 consensus_14223#1 TGCAGCAACATCAGAATGGC---------------------------------------- 675 consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATGCAGTGAATTGAACTAGGGA 1737 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACT 1797 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 TTGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAA 1857 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 ACTTAATTTGAACTTTCTTTTGTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAG 1917 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 CTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGATAGTGTTTCTAATACTTGCT 1977 consensus_14223#1 ------------------------------------------------------------ consensus_14223#2 ------------------------------------------------------------ consensus_14223#0 GGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATAT 2037 consensus_14223#1 ----------- consensus_14223#2 ----------- consensus_14223#0 CCCCTCTGAAA 2048 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||