These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1484 fasta sequence [CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCACACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTATGTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTACAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGAGGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG-CT-GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA-CCCAAACAACCCGCAACCTCTGCCGC-AGCCAGACCCTAACGCGCCATCACTACC-TCTGCCGCAGCC-AGACCCAAACGCGC-CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA-CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG--CCTCCTGGCCAACAAA-TTAATGCAAAGATATCATCACAGCCGGA-TTCTATTGGTGGAGCCAGAACTTTAT-ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG-ATATTTTTGTGTATGTTAATACACACCTATTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA] [-] EMBL CA764483 [CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCACACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTATGTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTACAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGAGGGTTATCTTCCTTTTC TCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTTGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTGTCTCGTCCTCTGCCccttgtctc ] [+] EMBL CA754213 [ ACACGAGGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG CT GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAG CCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTGCCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAGCCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTATCTCAGCCAGACCCTAACGCTCCGCCGTTGCCTCTGCCGCAACCTAACCCCAAACTACCCGTATCCTCTGTCGCAATCTATACCCTAACGCGCCACCACTGCCTTCTGCTGTAGCCTAGACCTCAACGCGCAAACAACTGCat ] [+] EMBL AK068117 [ TATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGCGTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTG CT GTCCACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACAACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTACCT ] [+] EMBL CF311500 [ AGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTCGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGC ] [+] EMBL AK104498 [ GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAATGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC ] [+] EMBL AK104803 [ GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC ] [+] EMBL CF318123 [ GAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGTCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCCTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAA ] [+] EMBL AK106177 [ CCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCATCACTACC TCTGCCGCAGCC AGACCCAAACGCGC CACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAC ] [+] EMBL C27696 [ CAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGANCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTNTNCTCCTGCTGCCTCTNCTGGTGCTGCAGCTTCTCNTTGCTGGGGGAAGCTTGGTTNATGATCTTCCTGCTGCAACTAATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTAACAGCAGCTTCCAAACCCAAGGCCAC ] [-] EMBL CB631750 [ ACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAGCCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAA CCCAAACAACCCGCAACCTCTGCCGC AGCCAGACCCTAACGCGCCACCACTGCC TCTGCCGCAGCC AGACCCAAATGCGC CACCACTGCCTCTGCCACAACCTGACCCGAACGCGCCACCAAAACCTTTGCCGCAACCAGACCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAATGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACGCACCGCCACAGCCTTTACAGCAACCAGACCCGAACACG CCTCCTGGCCAACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTACGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCGAGGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTACCTCTTTGTGT ] [+] EMBL AU089675 [ CCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCCGCAACCAGA CCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACG CCTCCTGGCCTACAAA TTAATGCAAAGATATCATCACAGCCGGA TTCTATTGGTGGAGCCAGAACTTTAT ATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATTCACATTGCCATGTTGATAGGTTTGCGATGTTATCTTTTCTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGAAGGTTTTTGTGTATGTTAAAACCCACCTATTTAaaaa ] [-] EMBL CF307671 [ GCAACCAGACCCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACGCCCCTCCTGGCCAACAAANTTAATGCAAAGATATCATCACAGCCGGATTTCTATTGGTGGAGCCAGAACTTTATAATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGACGAAGGTTTGCTATGTACTGCACTGGCTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTATTTAaaaaaaaa ] [+] EMBL AU164834 [ TATTGGTGGANCCAGAACTTTAT ATCCATACGGNGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGNTTGTACCCTG ATATTTTTGTGTATGTTAATACACACCTNTTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA] consensusID : consensus_14224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CACTGACATGGCTGAAGGAGTAGAAAACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCTGCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCCACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT] [+] EMBL CF307672 [CACTGACATGGCTGAAGGAGTAGAAAACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATCAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCTGCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCCTGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCCAAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACCACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCCGCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCCGAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCCAGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCTGCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCCACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT] consensusID : consensus_14224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 81 fasta sequence [CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATGCAGGCACGAGCTAGCCGGCNATGGNAGGCGTCGCATGGCTT] [+] EMBL OS38073 [CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGGTGATGCAGGCACGAGCTAGCCGGCNATGGNAGGCGTCGCATGGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14224#0 CAAATTAAAATTAAACCCACAATCGAAGTAAAAAGATTTCTCATACGTAAGCAGAGACCA 60 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 CACACACACACACTTTATGCTTGGCTGCAAGGCGTTGAAGCAGAGCGGCCGTGCTGTTAT 120 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GTTTAGCTCTCCTTAGTATAGCAGCAATAAACAGGAGATTACGACCTGCGATCCAGATTA 180 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 CAATTACTAACTTGTGTCCTAATTAATCAACCCGATGGACATCCAACCGAACAGACACGA 240 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GGGTTATCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTTGCGTGGGGAGCGATTAACACGC 300 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GTGCGTCGCTGATTGGCTCGCCATGGCTATAAATCTCGAGGTCGGTTGCCCCTTGCTGTC 360 consensus_14224#1 ----------------------------------CACTGACATGGCTGAAGGA-GTAGAA 25 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 CACTGCCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 420 consensus_14224#1 AACTGTCTGAGAAGCCGAGACCACTACAAGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 85 consensus_14224#2 -------------------------CAAGGCAGCAACTAGCTTAGCTAGCTAGCTACTGG 35 * ******************************* consensus_14224#0 TGAT-CAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCT 479 consensus_14224#1 TGAT-CAGGCACGAGCTAGCCGGCCATGGCGAGGCGTCGCCATGCTTGCTTTCTTCTCCT 144 consensus_14224#2 TGATGCAGGCACGAGCTAGCCGGCNATGGN-AGGCGTCGCATGGCTT------------- 81 **** ******************* **** ********* **** consensus_14224#0 GCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAAGCTTGGTTGATGATCTTCC 539 consensus_14224#1 GCTGCCTCTGCTGGTGCTGCAGCTTCTTCTTGCTGGGGGAATCTTGGTTGATGATCTTCC 204 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 TGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCC 599 consensus_14224#1 TGCTGCAACTCATCAGGTGCCGAGGTTAGTAGGGCCACAGCGCAAGTTACAGCAGCTTCC 264 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 AAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACC 659 consensus_14224#1 AAACCCAAGGCCACAGCCGCAACCATTGCCCCAGCCAAACCCAAATCCACAGCCACAACC 324 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 ACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCC 719 consensus_14224#1 ACTCCCACAGCCACAGCCACAGCCACAACCACAACCACAACCTCTGCCACAACCGCAGCC 384 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCC 779 consensus_14224#1 GCAACCACAGCCTTTACCGCTACCAGGCCCACAACCATTACCGCAACCCGGCCCGCAGCC 444 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCC 839 consensus_14224#1 GAACCCAAACCCCCAACCGTTACCACAGCCAAACCCAAATCCCCAGCCTTTACCTCAGCC 504 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 AGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCT 899 consensus_14224#1 AGACCCGAACGCTCCGCCGTTGCCTCTGCCGCAGCCTAACCCAAACAACCCGCAACCTCT 564 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCC 959 consensus_14224#1 GCCGCAGCCAGACCCTAACGCGCCATCACTACCTCTGCCGCAGCCAGACCCAAACGCGCC 624 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 ACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTTTGCCGCAACCAGA 1019 consensus_14224#1 ACCACTGCCTCTGCCACAACCTGATCCGAACGCGCCACCACAACCTT------------- 671 consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 CCCAAACAACCCTCAACCTTTACCGCAACCTGACCCTAACGCACCACCACAGCCTTTGCC 1079 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GCAACCAGACCCTAACTCGCCGCCACAGCCTTTGCCGCAACCAGACCCGAACACGCCTCC 1139 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 TGGCCAACAAATTAATGCAAAGATATCATCACAGCCGGATTCTATTGGTGGAGCCAGAAC 1199 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 TTTATATCCATACGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATAT 1259 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 GTTTTGATAGTAAGGAGAGGCTTATTGTTGTAAATAAGCGTGCTGAGTTACCATTTTTAG 1319 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 ATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTTTTTTTTGT 1379 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 TTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGATATTTTTGTGTATGTT 1439 consensus_14224#1 ------------------------------------------------------------ consensus_14224#2 ------------------------------------------------------------ consensus_14224#0 AATACACACCTATTTACCTCTTTGTGTAAAAAAAAAAAAAAAAAA 1484 consensus_14224#1 --------------------------------------------- consensus_14224#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||