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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2349 fasta sequence
[TAGCAGCTTAGCTCACTTTCAGTTCGTTCGATCTCGCTTCCATTTCTTCGCCATTTGAGCTTTCTTGGAGGCGTTTGATCGATCAGGATGATCGCACGCGATACCGTTCTGCGTTTCGCCGTGCGATTGTTCGTCGTGATCGTCGTCTCGTCTCGTTCTTCCTCGGCCGACGACGGCGGCGGCGACGGCGGCGTCGACTTCATCTACCAAGGTTTCCAGCACGCGGCGAACCTGACCATGGACGGGTCGGCGAAGGTGCTGCACGGCGGCGCGCTCCAGCTCACCAACGACAGCAACCGCCTCGTCGGCCACGCGTTCCACGCCGCGCCGGTGCGGTTTCTCGACGACGGCGCCGGCGGCGGCGGGGGAGGAGTGGTGTTGTCGTTCAGCACGGCGTTCGTCCTCGACATCGTCACCGTCGGGAGCGGCGGCGGCCACGGCCTCGCGTTCGTGGTGGCGCCGTCCGCCACGCTCCCCGGCGCGTCCCCGGAGATCTACCTCGGCGTCCTCGGGCCCCGCACCAACGGGAACGCGTCCGACCACGTCTCCGCCGTCGAGTTCGACACGGTGATGGACCTCGAGATGAACGACACCAACGGCAACCACGTCGGCGTCGACGTGAACAGCCTCGTGTCGGTCGTGTCGGAGCCGGTGGCGTACTACGCCGGCGACGGGAGCACCAAGGTGCCCGTGCAGCTGGAGAGCGCGCAGCAAATCCAGGCGTGGATAGACTACGACGGCGGCAGCAGCATCCTCAACGTCACCGTCGCGCCGGCGACGGTGACGGAGCGGCCTCGCCGGCCGCTCATCTCCACGAAGCTCGACCTCCTGCCGATCTTCAAGGAGAACATGTACGTTGGGCTCTCGTCGGCGACGGGGAAGCTGGCGAGCTCGCACTACATCTTGGCATGGAGCTTCCGGACGAACGGCGTCGCGCAATCCATCGATCTCCGGAGGCTGCCCAAAGTCCCGAGGCAGAGCTCGCCGCCGCCCAAGCTGCTCATCATCAAGTTCGCCGCGGTGGCCTGTGCAGGAACACTCACCCTGATCGCCGCGGCGATGGTCGCCGTGCTCTGGCTCCGGCGAAGGGCGGCGCTCGCCGACACGCTGGAGGAGTGGGAGCTGGAGCACCCTCAGAGGATCCCGTACAAGGAGCTCTACAAGGCGACCAAGGGGTTCAAGGAGAGCGAGCTCCTTGGCGCCGGCGGCTTCGGCCAGGTGTACAGAGGCGTCCTCCGGCGCCGCTCCGGCGAGGCGGTGGCGATCAAGCGGATCTCGAACGGGACACGGCAAGGGATGAGGGAGTTCGTCGCCGAGGTCGCCAGCCTCGGGCGGATGCGCCACCGCAACCTGGTCGAGCTGCGCGGGTGGTGCTAGCACGACCAGGACCTGCTCCTCGTCTACGAGTTCATGCCCGGCGGCAGCCTCGATGCGCGGCTGTTCGGCACGGCGGCGTCGGCGGCGGCGGCGGAGGGGGTGAAAGCGCCACCGCCGCCGCCGCTTCTGACGTGGGCGCAGCGGTTCGCCATCCTCAGGGGCGTCGCCCATGGCCTGCTCTACCTGCACGAGGAGTGGGAGCACGTGGTGGTGCACCGCGACGTGAAGGCGAACAACGTGCTCCTCGGCGCCGGCGACACGGGGGCCGCCCGGCTCGGCGACTTCGGCCTCGCGAGGCTCTACGAGCACGGCGCGACGCCGGCGACGACGCGCGTGGCCGGCACGCTGGGCTACATGGCGCCCGAGCTCACGTTCACCAGCCGCGCCACGACGGCCACCGACGTGTTCTCCTTCGGCGCGCTGCTCCTCGAGGTGGCGTGCGGGCGCCGCCCGATCGAGCCGGCGGCGGCGGGGGAGGCGGACGGCGACGTGCTCCTGGTGCGGTGGGTGCGAGACCGCGCGCTCGACGGCGACGGCGGCGGCGGCGACGTGCTGCGAGCCGTGGACCCGAGGCTGGAGGGGTGCTACGACGAGGAGGAGGCGAGGCTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGCCGGAGGCGAGGCCCAGCATGAGGCAGGTGTGCCGGTATCTCGACGGCGAGGAGATGCTGCAGGAGGACGCCACGCCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTGTCCATGACGTCATCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGGTGAACTATAGAAGTATACTGTATAACTATACTGTACTGAATATGAGTGTGTTGTGTGTACAGTAGTGATTGCTCAAACAAAATTCAGAGAAGTGATATGGATGTAGCCCAAACAAAAGAATCTGAATTTTTG]
[+] EMBL AK110453 [TAGCAGCTTAGCTCACTTTCAGTTCGTTCGATCTCGCTTCCATTTCTTCGCCATTTGAGCTTTCTTGGAGGCGTTTGATCGATCAGGATGATCGCACGCGATACCGTTCTGCGTTTCGCCGTGCGATTGTTCGTCGTGATCGTCGTCTCGTCTCGTTCTTCCTCGGCCGACGACGGCGGCGGCGACGGCGGCGTCGACTTCATCTACCAAGGTTTCCAGCACGCGGCGAACCTGACCATGGACGGGTCGGCGAAGGTGCTGCACGGCGGCGCGCTCCAGCTCACCAACGACAGCAACCGCCTCGTCGGCCACGCGTTCCACGCCGCGCCGGTGCGGTTTCTCGACGACGGCGCCGGCGGCGGCGGGGGAGGAGTGGTGTTGTCGTTCAGCACGGCGTTCGTCCTCGACATCGTCACCGTCGGGAGCGGCGGCGGCCACGGCCTCGCGTTCGTGGTGGCGCCGTCCGCCACGCTCCCCGGCGCGTCCCCGGAGATCTACCTCGGCGTCCTCGGGCCCCGCACCAACGGGAACGCGTCCGACCACGTCTCCGCCGTCGAGTTCGACACGGTGATGGACCTCGAGATGAACGACACCAACGGCAACCACGTCGGCGTCGACGTGAACAGCCTCGTGTCGGTCGTGTCGGAGCCGGTGGCGTACTACGCCGGCGACGGGAGCACCAAGGTGCCCGTGCAGCTGGAGAGCGCGCAGCAAATCCAGGCGTGGATAGACTACGACGGCGGCAGCAGCATCCTCAACGTCACCGTCGCGCCGGCGACGGTGACGGAGCGGCCTCGCCGGCCGCTCATCTCCACGAAGCTCGACCTCCTGCCGATCTTCAAGGAGAACATGTACGTTGGGCTCTCGTCGGCGACGGGGAAGCTGGCGAGCTCGCACTACATCTTGGCATGGAGCTTCCGGACGAACGGCGTCGCGCAATCCATCGATCTCCGGAGGCTGCCCAAAGTCCCGAGGCAGAGCTCGCCGCCGCCCAAGCTGCTCATCATCAAGTTCGCCGCGGTGGCCTGTGCAGGAACACTCACCCTGATCGCCGCGGCGATGGTCGCCGTGCTCTGGCTCCGGCGAAGGGCGGCGCTCGCCGACACGCTGGAGGAGTGGGAGCTGGAGCACCCTCAGAGGATCCCGTACAAGGAGCTCTACAAGGCGACCAAGGGGTTCAAGGAGAGCGAGCTCCTTGGCGCCGGCGGCTTCGGCCAGGTGTACAGAGGCGTCCTCCGGCGCCGCTCCGGCGAGGCGGTGGCGATCAAGCGGATCTCGAACGGGACACGGCAAGGGATGAGGGAGTTCGTCGCCGAGGTCGCCAGCCTCGGGCGGATGCGCCACCGCAACCTGGTCGAGCTGCGCGGGTGGTGCTAGCACGACCAGGACCTGCTCCTCGTCTACGAGTTCATGCCCGGCGGCAGCCTCGATGCGCGGCTGTTCGGCACGGCGGCGTCGGCGGCGGCGGCGGAGGGGGTGAAAGCGCCACCGCCGCCGCCGCTTCTGACGTGGGCGCAGCGGTTCGCCATCCTCAGGGGCGTCGCCCATGGCCTGCTCTACCTGCACGAGGAGTGGGAGCACGTGGTGGTGCACCGCGACGTGAAGGCGAACAACGTGCTCCTCGGCGCCGGCGACACGGGGGCCGCCCGGCTCGGCGACTTCGGCCTCGCGAGGCTCTACGAGCACGGCGCGACGCCGGCGACGACGCGCGTGGCCGGCACGCTGGGCTACATGGCGCCCGAGCTCACGTTCACCAGCCGCGCCACGACGGCCACCGACGTGTTCTCCTTCGGCGCGCTGCTCCTCGAGGTGGCGTGCGGGCGCCGCCCGATCGAGCCGGCGGCGGCGGGGGAGGCGGACGGCGACGTGCTCCTGGTGCGGTGGGTGCGAGACCGCGCGCTCGACGGCGACGGCGGCGGCGGCGACGTGCTGCGAGCCGTGGACCCGAGGCTGGAGGGGTGCTACGACGAGGAGGAGGCGAGGCTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGCCGGAGGCGAGGCCCAGCATGAGGCAGGTGTGCCGGTATCTCGACGGCGAGGAGATGCTGCAGGAGGACGCCACGCCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTGTCCATGACGTCATCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGGTGAACTATAGAAGTATACTGTATAACTATACTGTACTGAATATGAGTGTGTTGTGTGTACAGTAGTGATTGCTCAAACAAAATTCAGAGAAGTGATATGGATGTAGCCCAAACAAAAGAATCTGAATTTTTG]
consensusID : consensus_1423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[ACGTGCTGCGACCGTGGACCCGAGGCTGGAGGGGTGCTACAGACGAGGAGGAGGCGAGCTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGCACGGAGGCGAGGCCCAGCATGAGACAGGTGTGCCAGGTATCTCGACGGCGAGGAGATGTTGCAGGAGGACGCCACGCCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTGTCCATGACGTCGTCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGGTGAACTACACTGTACATATATACAGGATACGAGTAAAAGTACTGTAGAACTATAGAAGTATAAAACTGTACTGAATATGAGTGTGTTGTGTGTACACTGTACAGAGGTAGTGATTAAGCAAATTCAGAGAAGTGATATGGATGGAGCCCAACAAAAA]
[+] EMBL BI812787 [ACGTGCTGCGACCGTGGACCCGAGGCTGGAGGGGTGCTACAGACGAGGAGGAGGCGAGCTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGCACGGAGGCGAGGCCCAGCATGAGACAGGTGTGCCAGGTATCTCGACGGCGAGGAGATGTTGCAGGAGGACGCCACGCCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTGTCCATGACGTCGTCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGGTGAACTACACTGTACATATATACAGGATACGAGTAAAAGTACTGTAGAACTATAGAAGTATAAAACTGTACTGAATATGAGTGTGTTGTGTGTACACTGTACAGAGGTAGTGATTAAGCAAATTCAGAGAAGTGATATGGATGGAGCCCAACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1423#0 TAGCAGCTTAGCTCACTTTCAGTTCGTTCGATCTCGCTTCCATTTCTTCGCCATTTGAGC 60
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 TTTCTTGGAGGCGTTTGATCGATCAGGATGATCGCACGCGATACCGTTCTGCGTTTCGCC 120
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GTGCGATTGTTCGTCGTGATCGTCGTCTCGTCTCGTTCTTCCTCGGCCGACGACGGCGGC 180
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GGCGACGGCGGCGTCGACTTCATCTACCAAGGTTTCCAGCACGCGGCGAACCTGACCATG 240
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GACGGGTCGGCGAAGGTGCTGCACGGCGGCGCGCTCCAGCTCACCAACGACAGCAACCGC 300
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CTCGTCGGCCACGCGTTCCACGCCGCGCCGGTGCGGTTTCTCGACGACGGCGCCGGCGGC 360
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GGCGGGGGAGGAGTGGTGTTGTCGTTCAGCACGGCGTTCGTCCTCGACATCGTCACCGTC 420
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GGGAGCGGCGGCGGCCACGGCCTCGCGTTCGTGGTGGCGCCGTCCGCCACGCTCCCCGGC 480
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GCGTCCCCGGAGATCTACCTCGGCGTCCTCGGGCCCCGCACCAACGGGAACGCGTCCGAC 540
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CACGTCTCCGCCGTCGAGTTCGACACGGTGATGGACCTCGAGATGAACGACACCAACGGC 600
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 AACCACGTCGGCGTCGACGTGAACAGCCTCGTGTCGGTCGTGTCGGAGCCGGTGGCGTAC 660
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 TACGCCGGCGACGGGAGCACCAAGGTGCCCGTGCAGCTGGAGAGCGCGCAGCAAATCCAG 720
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GCGTGGATAGACTACGACGGCGGCAGCAGCATCCTCAACGTCACCGTCGCGCCGGCGACG 780
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GTGACGGAGCGGCCTCGCCGGCCGCTCATCTCCACGAAGCTCGACCTCCTGCCGATCTTC 840
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 AAGGAGAACATGTACGTTGGGCTCTCGTCGGCGACGGGGAAGCTGGCGAGCTCGCACTAC 900
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 ATCTTGGCATGGAGCTTCCGGACGAACGGCGTCGCGCAATCCATCGATCTCCGGAGGCTG 960
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CCCAAAGTCCCGAGGCAGAGCTCGCCGCCGCCCAAGCTGCTCATCATCAAGTTCGCCGCG 1020
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GTGGCCTGTGCAGGAACACTCACCCTGATCGCCGCGGCGATGGTCGCCGTGCTCTGGCTC 1080
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CGGCGAAGGGCGGCGCTCGCCGACACGCTGGAGGAGTGGGAGCTGGAGCACCCTCAGAGG 1140
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 ATCCCGTACAAGGAGCTCTACAAGGCGACCAAGGGGTTCAAGGAGAGCGAGCTCCTTGGC 1200
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GCCGGCGGCTTCGGCCAGGTGTACAGAGGCGTCCTCCGGCGCCGCTCCGGCGAGGCGGTG 1260
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GCGATCAAGCGGATCTCGAACGGGACACGGCAAGGGATGAGGGAGTTCGTCGCCGAGGTC 1320
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GCCAGCCTCGGGCGGATGCGCCACCGCAACCTGGTCGAGCTGCGCGGGTGGTGCTAGCAC 1380
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GACCAGGACCTGCTCCTCGTCTACGAGTTCATGCCCGGCGGCAGCCTCGATGCGCGGCTG 1440
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 TTCGGCACGGCGGCGTCGGCGGCGGCGGCGGAGGGGGTGAAAGCGCCACCGCCGCCGCCG 1500
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CTTCTGACGTGGGCGCAGCGGTTCGCCATCCTCAGGGGCGTCGCCCATGGCCTGCTCTAC 1560
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CTGCACGAGGAGTGGGAGCACGTGGTGGTGCACCGCGACGTGAAGGCGAACAACGTGCTC 1620
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CTCGGCGCCGGCGACACGGGGGCCGCCCGGCTCGGCGACTTCGGCCTCGCGAGGCTCTAC 1680
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GAGCACGGCGCGACGCCGGCGACGACGCGCGTGGCCGGCACGCTGGGCTACATGGCGCCC 1740
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GAGCTCACGTTCACCAGCCGCGCCACGACGGCCACCGACGTGTTCTCCTTCGGCGCGCTG 1800
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 CTCCTCGAGGTGGCGTGCGGGCGCCGCCCGATCGAGCCGGCGGCGGCGGGGGAGGCGGAC 1860
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GGCGACGTGCTCCTGGTGCGGTGGGTGCGAGACCGCGCGCTCGACGGCGACGGCGGCGGC 1920
consensus_1423#1 ------------------------------------------------------------
consensus_1423#0 GGCGACGTGCTGCGAGCCGTGGACCCGAGGCTGGAGGGGTGCTAC-GACGAGGAGGAGGC 1979
consensus_1423#1 ----ACGTGCTGCGA-CCGTGGACCCGAGGCTGGAGGGGTGCTACAGACGAGGAGGAGGC 55
*********** ***************************** **************
consensus_1423#0 GAGGCTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGC-CGGAGGCGAGGCCCA 2038
consensus_1423#1 GAG-CTGGTGCTGTGGCTCGGGCTGATGTGCAGCCAGGCGAGGCACGGAGGCGAGGCCCA 114
*** **************************************** ***************
consensus_1423#0 GCATGAGGCAGGTGTGCC-GGTATCTCGACGGCGAGGAGATGCTGCAGGAGGACGCCACG 2097
consensus_1423#1 GCATGAGACAGGTGTGCCAGGTATCTCGACGGCGAGGAGATGTTGCAGGAGGACGCCACG 174
******* ********** *********************** *****************
consensus_1423#0 CCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTG 2157
consensus_1423#1 CCGGCGGCGATCTTCTCCGGCGCCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTG 234
************************************************************
consensus_1423#0 TCCATGACGTCATCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGG 2217
consensus_1423#1 TCCATGACGTCGTCCTCCGCCGGCGGCACCATGTCGGCCAGCTCGCTGCAAGGCGGCCGG 294
*********** ************************************************
consensus_1423#0 TGAACTA--------------------TAGAAGTA----TACTGTATAACTATA------ 2247
consensus_1423#1 TGAACTACACTGTACATATATACAGGATACGAGTAAAAGTACTGTAGAACTATAGAAGTA 354
******* ** **** ******* *******
consensus_1423#0 -----CTGTACTGAATATGAGTGTGTTGTGTGTACAGT------AGTGATTGCTCAAACA 2296
consensus_1423#1 TAAAACTGTACTGAATATGAGTGTGTTGTGTGTACACTGTACAGAGGTAGTGATTAAGCA 414
******************************* * ** * ** * ** **
consensus_1423#0 AAATTCAGAGAAGTGATATGGATGTAGCCCAAACAAAAGAATCTGAATTTTTG 2349
consensus_1423#1 AA-TTCAGAGAAGTGATATGGATGGAGCCCAACAAAAA--------------- 451
** ********************* ******* ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||