cluster # 14233

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Oryza sativa
cluster # 14233 cluster # 14233 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14233#0 length = 1445 sequences # 7
consensus_14233#1 length = 823 sequences # 6

consensus_14233#2 length = 667 sequences # 1
consensus_14233#3 length = 162 sequences # 1

consensusID : consensus_14233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1445
fasta sequence

                              [CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTCCAAAAAAAAAAAAAGG]

[+] EMBL AK069737             [CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTA                                        ]
[+] EMBL CB665324             [                     CATCCCCCTTATAGCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCCCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAACGTTGTAGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGGGGCGAAGAATTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACGTCACCGAGGACGCACTGTTCCTCGGCTTCCGCCACAGGAACTGGAACCCGAGGATGATCGCGCTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB665359             [                     CATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAACGCTGTAGAGTGCGAGCGGAGCTCGGGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU162653             [                               CTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB663465             [                                  TCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB656384             [                                                                                    TCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAAGTGATTTGGGGTTTTTCCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB656385             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGGAGCATTAAGGGACATTCGAGCTGTCCAAAAAAAAAAAAAGG]




>consensus_14233#0
CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCA
CCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGG
AGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCC
CTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGG
AAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGA
GGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAA
GCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGA
CGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTC
CTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCA
CGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGG
CAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCT
GTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTG
CGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTG
CGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTC
CTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAA
GGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACC
CAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCT
TAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAA
GGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGT
ACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTT
CTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAA
ACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTAT
GTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGT
TTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTCCAAAAAAAAAA
AAAGG

consensusID : consensus_14233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 823
fasta sequence

                              [ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG-TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA-CTCTGATGCCTGTCTCTGATT-CCGAGGATG--CA-AAGGAGTA-GTTATCAAGACTTGAGTCA-GGTGGCCTTATTCA-TGA-C-TGG-TCTGTGAATCT-TGTA-CAATGTTGGATCTTGCTTTCTACTAA-GAATCA-GTAGCTCGATAAGAAAA-TGTTGTT-TTTCTTGGTGCA-TGTACA-ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA-TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA-TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACTCGATATC]

[-] EMBL CB665325             [ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG  CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTT                         ]
[-] EMBL CB665360             [                      TTCAGGACCCGTTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG  CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAAAAAGGCTTGTGTGCAACACAGCTTCTCTGATAATTTT                         ]
[-] EMBL CB646904             [                                                                                                                                 GGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG  CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACTCGATATC]
[+] EMBL BI794953             [                                                                                                                                                                                                                          TCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGCTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACCTTTGATGCCTGTCTCTGATTCCCGAGGATGCACA AAGGAGTAGGTTATCCAGACTTGAGTCACGGTGCCCTTATTCATTGAGC TGGTTCTGTGAATCTGTGTACCACTGTTGGATCTTGCTTTCTACTAACGAATCACGTAGCTCGATAAGAAAACTGTTGTTCTTTCTTGGTGCACTGTACACATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAAC AGAAACGTTGCCGTTGTATTATCTGCAGTTGTTCTTTGTACC ATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTTACAGGTATCTTGTATTGTAaaaaa                                                                                                                       ]
[+] EMBL AU056134             [                                                                                                                                                                                                                                                                                                                                                                         CCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG  CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCAaaaa                   ]
[+] EMBL BM421621             [                                                                                                                                                                                                                                                                                                                                                                                               GCCTGTCTCTGATT CCGAGGATG  CAGAAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGAGCGTGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGNTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCAGTTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAAaaa                          ]




>consensus_14233#1
ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCAT
CTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGA
TCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTC
AAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCC
TTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTC
CATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACAT
CCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATC
AAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGAT
CTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGT
ACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTG
TATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCC
TTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCT
GACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACAC
AGCTTCTCTGATAATTTTCACATCAATGTCGATACTCGATATC

consensusID : consensus_14233#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG]

[+] EMBL CB646903             [TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG]




>consensus_14233#2
TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGC
GCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGC
CGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCG
GCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTT
TGCCCTTTGGAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGG
GTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCT
CTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTG
GAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAA
GCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCA
CTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCA
TTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT
TTTCAGG

consensusID : consensus_14233#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [TGCCAAGCGTGCTGTGGAAGGAGTTCTGCCRGCCCCAGGATGATGCAGGACCNCTCCGGCGCNCATCGTCGACGGCAACTGGAAGGCGTCGGGAAGCTCCTTATCCATTGCGCGGGGVCCAAGGGTCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT]

[+] EMBL AA749681             [TGCCAAGCGTGCTGTGGAAGGAGTTCTGCCRGCCCCAGGATGATGCAGGACCNCTCCGGCGCNCATCGTCGACGGCAACTGGAAGGCGTCGGGAAGCTCCTTATCCATTGCGCGGGGVCCAAGGGTCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT]




>consensus_14233#3
TGCCAAGCGTGCTGTGGAAGGAGTTCTGCCRGCCCCAGGATGATGCAGGACCNCTCCGGC
GCNCATCGTCGACGGCAACTGGAAGGCGTCGGGAAGCTCCTTATCCATTGCGCGGGGVCC
AAGGGTCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14233#2      ---------------------TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCT 39
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      ---CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCT 57
consensus_14233#1      ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCAT 60
                                                                                   

consensus_14233#2      CCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCC-CCTCAA 98
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      CCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCC-CCTCAA 116
consensus_14233#1      CTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGA 120
                                                                                   

consensus_14233#2      CCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCC 158
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      CCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCC 176
consensus_14233#1      TCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTC 180
                                                                                   

consensus_14233#2      AGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGG 218
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      AGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGG 236
consensus_14233#1      AAA---GGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTG 237
                                                                                   

consensus_14233#2      AGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGG---------------TGGTGGCG 263
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      AGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCG 296
consensus_14233#1      TCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATAT-----GATACCCAGA 292
                                                                                   

consensus_14233#2      CGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGG 323
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      CGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGG 356
consensus_14233#1      AGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAAC 352
                                                                                   

consensus_14233#2      TGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCG 383
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      TGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCG 416
consensus_14233#1      GGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAG 412
                                                                                   

consensus_14233#2      AGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCT 443
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      AGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCT 476
consensus_14233#1      TAGT-------TATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCT 465
                                                                                   

consensus_14233#2      TCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGA--GTT 501
consensus_14233#3      -------------------------------TGCCAAGCG--TGCTGTGGAAGGA--GTT 25
consensus_14233#0      TCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGA--GTT 534
consensus_14233#1      TGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTT 525
                                                         **   *   * *  * **     ***

consensus_14233#2      CTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGC-GGCAGCCA-CATC 559
consensus_14233#3      CTGCCR-GCC-------CCAGGATGATGCAGGACCN---CTCCGGC-G-----CN-CATC 67
consensus_14233#0      CTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGC-GGCAGCCA-CATC 592
consensus_14233#1      TTTCTTGGTG-------CATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGC 578
                        * *   *         *  * *  ***  *** *     * *  *       *  ** *

consensus_14233#2      GTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCC-TTATCCATTGCGCGGGGTGCAC-CA 617
consensus_14233#3      GTCGACGGCAACTGGAAGGCG-TCGGGAAGCTCC-TTATCCATTGCGCGGGG---VC-CA 121
consensus_14233#0      GTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCC-TTATCCATTGCGCGGGGTGCAC-CA 650
consensus_14233#1      GTAACAAGAAAC--GTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATT 636
                       **     * ***  *  * ** *     * ** * ** * * ***  *        *   

consensus_14233#2      AGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG---------- 667
consensus_14233#3      AGGGT--CCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT----------------- 162
consensus_14233#0      AGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCT 710
consensus_14233#1      AGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATT 696
                       **      ** * *    ** * *   **  **** ** *  *                 

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      CAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCT 770
consensus_14233#1      GTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGT 756
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      CGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCA 830
consensus_14233#1      ACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACT 816
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      TCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGT 890
consensus_14233#1      CGATATC----------------------------------------------------- 823
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      TCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAA 950
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      ATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATT 1010
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      ATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCG 1070
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      AGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTG 1130
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      TGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAA 1190
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      TGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGC 1250
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      GTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAG 1310
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      AAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGT 1370
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ------------------------------------------------------------
consensus_14233#3      ------------------------------------------------------------
consensus_14233#0      ATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTCC 1430
consensus_14233#1      ------------------------------------------------------------
                                                                                   

consensus_14233#2      ---------------
consensus_14233#3      ---------------
consensus_14233#0      AAAAAAAAAAAAAGG 1445
consensus_14233#1      ---------------