These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1445 fasta sequence [CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTCCAAAAAAAAAAAAAGG] [+] EMBL AK069737 [CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTA ] [+] EMBL CB665324 [ CATCCCCCTTATAGCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCCCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAACGTTGTAGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGGGGCGAAGAATTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACGTCACCGAGGACGCACTGTTCCTCGGCTTCCGCCACAGGAACTGGAACCCGAGGATGATCGCGCTCTT ] [+] EMBL CB665359 [ CATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAACGCTGTAGAGTGCGAGCGGAGCTCGGGGTGA ] [+] EMBL AU162653 [ CTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGT ] [+] EMBL CB663465 [ TCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCtc ] [+] EMBL CB656384 [ TCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAAGTGATTTGGGGTTTTTCCGCGG ] [-] EMBL CB656385 [ TACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGGAGCATTAAGGGACATTCGAGCTGTCCAAAAAAAAAAAAAGG] consensusID : consensus_14233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 823 fasta sequence [ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG-TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA-CTCTGATGCCTGTCTCTGATT-CCGAGGATG--CA-AAGGAGTA-GTTATCAAGACTTGAGTCA-GGTGGCCTTATTCA-TGA-C-TGG-TCTGTGAATCT-TGTA-CAATGTTGGATCTTGCTTTCTACTAA-GAATCA-GTAGCTCGATAAGAAAA-TGTTGTT-TTTCTTGGTGCA-TGTACA-ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA-TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA-TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACTCGATATC] [-] EMBL CB665325 [ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTT ] [-] EMBL CB665360 [ TTCAGGACCCGTTTCTCAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAAAAAGGCTTGTGTGCAACACAGCTTCTCTGATAATTTT ] [-] EMBL CB646904 [ GGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTG TTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACTCGATATC] [+] EMBL BI794953 [ TCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGCTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACCTTTGATGCCTGTCTCTGATTCCCGAGGATGCACA AAGGAGTAGGTTATCCAGACTTGAGTCACGGTGCCCTTATTCATTGAGC TGGTTCTGTGAATCTGTGTACCACTGTTGGATCTTGCTTTCTACTAACGAATCACGTAGCTCGATAAGAAAACTGTTGTTCTTTCTTGGTGCACTGTACACATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAAC AGAAACGTTGCCGTTGTATTATCTGCAGTTGTTCTTTGTACC ATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTTACAGGTATCTTGTATTGTAaaaaa ] [+] EMBL AU056134 [ CCTTGGTTTATGCA CTCTGATGCCTGTCTCTGATT CCGAGGATG CA AAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGA C TGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGTTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCA TTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCAaaaa ] [+] EMBL BM421621 [ GCCTGTCTCTGATT CCGAGGATG CAGAAGGAGTA GTTATCAAGACTTGAGTCA GGTGGCCTTATTCA TGAGCGTGG TCTGTGAATCT TGTA CAATGTTGGATCTTGCTTTCTACTAA GAATCA GTAGCTCGATAAGAAAA TGNTGTT TTTCTTGGTGCA TGTACA ATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCAGTTGTTCTTTGTACCAATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCA TTACAGGTATCTTGTATTGTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAAaaa ] consensusID : consensus_14233#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG] [+] EMBL CB646903 [TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCTCCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCCCCTCAACCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCCAGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGGAGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGTGGTGGCGCGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGGTGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCGAGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCTTCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGAGTTCTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGCGGCAGCCACATCGTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCCTTATCCATTGCGCGGGGTGCACCAAGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG] consensusID : consensus_14233#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [TGCCAAGCGTGCTGTGGAAGGAGTTCTGCCRGCCCCAGGATGATGCAGGACCNCTCCGGCGCNCATCGTCGACGGCAACTGGAAGGCGTCGGGAAGCTCCTTATCCATTGCGCGGGGVCCAAGGGTCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT] [+] EMBL AA749681 [TGCCAAGCGTGCTGTGGAAGGAGTTCTGCCRGCCCCAGGATGATGCAGGACCNCTCCGGCGCNCATCGTCGACGGCAACTGGAAGGCGTCGGGAAGCTCCTTATCCATTGCGCGGGGVCCAAGGGTCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14233#2 ---------------------TCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCT 39 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 ---CGCTCGGCCGGCTCCTCTTCTCATCCTCCACCTCTCCCTTCCCTTCCGCCTCTACCT 57 consensus_14233#1 ACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCTCAAGGACCTGCGGAAAGAGCAT 60 consensus_14233#2 CCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCC-CCTCAA 98 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 CCACCTCCACCTCACCTGCGCGCGCCTTCCCCCCATTGCCTCCGCCTCCGCCC-CCTCAA 116 consensus_14233#1 CTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCTCGGATCCTTGCGAGCACCTTGA 120 consensus_14233#2 CCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCC 158 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 CCGGAGGAGCTCCCCCGGCTGCCGCTCCGTGGCCCGTGTCCCGTGGCCGCTCTCCTCCCC 176 consensus_14233#1 TCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCATCTTCAAGTCCTTTGCTTCTTC 180 consensus_14233#2 AGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGG 218 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 AGCCCTGGGTGGGTCGGCGTCGGCGGCGGGGGAACTAACCGGAGATCCACCCGGACCCGG 236 consensus_14233#1 AAA---GGTCAAGAAGACGCTGATTGAGAAGCAAGCAAAGTTCCATCCAAAGGAGGTGTG 237 consensus_14233#2 AGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGG---------------TGGTGGCG 263 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 AGGGAAGGGAGGGGGATCCCTTTGCCCTTTGGAGGGGGGGTGGGTTCAGGGGTGGTGGCG 296 consensus_14233#1 TCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAAATAT-----GATACCCAGA 292 consensus_14233#2 CGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGG 323 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 CGGAGGCCAGCGTTGTTGAGTGCGAGCGGAGCTCGGGGTGAGCTGAGATGGTGCTGGTGG 356 consensus_14233#1 AGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAAC 352 consensus_14233#2 TGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCG 383 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 TGAAGCAGTACCGCTGCACGCACTCCGCGAGCTGCCTCTGCCTCAAGGGGCACATCAGCG 416 consensus_14233#1 GGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCGAGGATGCAAAGGAG 412 consensus_14233#2 AGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCT 443 consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 AGGACGCACTGTTCCTCGTCTTCCGCCACATGAACTGGAACCCGAGGATGATCGCGCTCT 476 consensus_14233#1 TAGT-------TATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCT 465 consensus_14233#2 TCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGA--GTT 501 consensus_14233#3 -------------------------------TGCCAAGCG--TGCTGTGGAAGGA--GTT 25 consensus_14233#0 TCTCCTGCGTCTCCAAGTGGTTCGACGACATCGCCAAGCGCGTGCTGTGGAAGGA--GTT 534 consensus_14233#1 TGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTT 525 ** * * * * ** *** consensus_14233#2 CTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGC-GGCAGCCA-CATC 559 consensus_14233#3 CTGCCR-GCC-------CCAGGATGATGCAGGACCN---CTCCGGC-G-----CN-CATC 67 consensus_14233#0 CTGCCACGCCAGGGCGCCCAGGATGATGCAGGACCTGCACTCCGGC-GGCAGCCA-CATC 592 consensus_14233#1 TTTCTTGGTG-------CATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGC 578 * * * * * * *** *** * * * * * ** * consensus_14233#2 GTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCC-TTATCCATTGCGCGGGGTGCAC-CA 617 consensus_14233#3 GTCGACGGCAACTGGAAGGCG-TCGGGAAGCTCC-TTATCCATTGCGCGGGG---VC-CA 121 consensus_14233#0 GTCGACGGCAACTGGAAGGCGCTCGGGAAGCTCC-TTATCCATTGCGCGGGGTGCAC-CA 650 consensus_14233#1 GTAACAAGAAAC--GTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATT 636 ** * *** * * ** * * ** * ** * * *** * * consensus_14233#2 AGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGG---------- 667 consensus_14233#3 AGGGT--CCTGTTTGGTAACATACACGTTCCTGGGCACTTTGT----------------- 162 consensus_14233#0 AGGGTGGCCTGTTTGGTAACATACACGTTCCTGGGCACTTTGTTTTCAGGACCCGCTTCT 710 consensus_14233#1 AGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATT 696 ** ** * * ** * * ** **** ** * * consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 CAAGGACCTGCGGAAAGAGCATCTTGCCTCCGCAGTGCAGGACAGATGTGTTGTACGTCT 770 consensus_14233#1 GTATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGT 756 consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 CGGATCCTTGCGAGCACCTTGATCAGGGTGAGGAAGGTGATTTGGGGTTTTTCCGCGGCA 830 consensus_14233#1 ACAAATTTTGCTTGTGTGCAACACAGCTTCTCTGATAATTTTCACATCAATGTCGATACT 816 consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 TCTTCAAGTCCTTTGCTTCTTCAAAGGTCAAGAAGATGCTGATTGAGAAGCAAGCAAAGT 890 consensus_14233#1 CGATATC----------------------------------------------------- 823 consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 TCCATCCAAAGGAGGTGTGTCCTTATTGTAAAGCCAAGCTATGGAACTTGCTGCAGGCAA 950 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 ATATGATACCCAGAAGTGCTTCCATAAGGTTGGATGCTTATGACGATTCTGTTGAGTATT 1010 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 ATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCTGTCTCTGATTCCG 1070 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 AGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTG 1130 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 TGAATCTTGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAA 1190 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 TGTTGTTTTTCTTGGTGCATGTACAATGTGGGATCTTTCTTTCAACTAATAGCCAGCAGC 1250 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 GTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACCAATAGAACATTAG 1310 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 AAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGT 1370 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 ------------------------------------------------------------ consensus_14233#3 ------------------------------------------------------------ consensus_14233#0 ATCTACATGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTCC 1430 consensus_14233#1 ------------------------------------------------------------ consensus_14233#2 --------------- consensus_14233#3 --------------- consensus_14233#0 AAAAAAAAAAAAAGG 1445 consensus_14233#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||