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Oryza sativa
cluster # 14239 cluster # 14239       Sequences # 15       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14239#0 length = 904 sequences # 15  

consensusID : consensus_14239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 904
fasta sequence
                              [AACTAGTTTCCAAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT-TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG-CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG-TTGGTGAAGAT-GAGACGGACCGGAAAGTGCCAAGCTTTGC-GGAGACGACAGAAAAGAA-TGAA-GAGGAGGAAACAG-TAACGAAACCA-TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGAAGAAGATCCGACCGTACGCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCATCATCAAGTCGGTCTCGTCGCCGGCCATCGCGCCGGCCTGCACGCGGACCCACAACGTCCCGGCGGTGGTCTTCTCCGTGGCCGGATACACCGACAACTTCTTCCACGACAACACGGACGTGAT]

[+] EMBL CB637739             [AACTAGTTGCCAAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TATAACAAAAACTTGTATATGTTAGGTGCTAACTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB640769             [    AGTTTCCAAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGATGACGATAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB652835             [     GTTTCCAAGGAGCGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAACAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCANAGGAGAAAACCATGTTCTTCGTAAA                                                                                                                                                                                                                              ]
[+] EMBL OSS12884A            [           AAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGNTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGGCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGGACCAACTGCGTCGA TNAGCAGAACCCTGTTCTTGGTNAACAACAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSS13104A            [           AAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGAAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCG TCTCCTNA CTACATCTCCTTTTCCCG CTTTTNG CATCTACTNG CGGTTTTCGAGAG ACG NCTTGGTGATGAAG ACG ACCA CTGGGTNGAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB639988             [                        ATCGCCTACATGTTACACTCGGCTCGTCATGTGCGGATTTAAGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCATGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB673173             [                                                       TGCGGATCCTTGCCT TAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTACTCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGGTCCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGT                                                                                                                                                                                                          ]
[+] EMBL CB627352             [                                                               TAAGCCTCTATAACAAAAACTTGTATATGCTAGGTGCTAGCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCGCCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACTACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGCAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGAAGAAGATCCGACCGTACGCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCATCATCAAGTCGGTCTCGTCGCCGGCCATCGCGCCGGCCTGCACGCGGACCCACAACGTCCCGGCGGTGGTCTTCTCCGTGGCCGGATACACCGACA                            ]
[+] EMBL CB627940             [                                                                                                GTGCTCTCTGGTGATCGCAGCTGGTTGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCGCCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACTACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGCAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGAAGAAGATCCGACCGTACGCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCATCATCAAGTCGGTCTCGTCGCCGGCCATCGCGCCGGCCTGCACGCGGACCCACAACGTCCCGGCGGTGGTCTTCTCCGTGGCCGGATACACCGACAACTTCTTCCACGACAACACGGACGTGAT]
[+] EMBL CB674912             [                                                                                                                             ACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGAAGAAGATCCGACCGTACGCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCATCATCAAGTCGGTCTCGTCGCCGGCCATCGCGCCGGCCTGCACGCGGACCCACAACGTCCCGGCGGTGGTCTTCTCCGTGGCCGGATACACCGACAACTTCTTCCACGACAACACGGACGTGA ]
[+] EMBL OSR27771A            [                                                                                                                                                 TCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGNCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGNAGGNTCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGNACCACCTGCGTCGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS4248A             [                                                                                                                                                       GTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTTC GGAGACGNCAGAAAAGAA TNAAGGAGGAGGNAACAG TAACGGAANCA TTCGGGGACGGAGCTNAAGCC                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS3537A             [                                                                                                                                                       GTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTTCGGGAGACGNCAGAAAAGAA TGAA GAGGNGGAAACAG TAACGGAACCA TTCGGGGACGAAGCTNAGGCCAC ATNTTCTGCGTTNAGAACGGCGTT ATNAGGGGTTTCCATATTCG                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS4545A             [                                                                                                                                                       GTCCTTGCGTGATGTCGTCGACGGCGTACACGCGG CCGTCCAAGCCANCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGGAGCTTGNNAGGNTCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCGCTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGTTCAACAACAGAGCAAAGAAGAGGACGAGAAANATGTTTGGTGAAGATNAAGACGGACCGGAAAGTGCCAAGNTTTTC GGAGACGACAGAAAAGAATTNAG GAGGAGGAAACAGTTACCGAAACCATTCCGGGGACGAAGntt                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA753695             [                                                                                                                                                                                                                                                                                                                                                 GCCATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATG TTGGTGAAGAT GAGACGGACCGGAAAGTGCCAAGCTTTGC GGAGACGACAGAAAAGAA TGAA GAGGAGGAAACAG TAACGAAACCA TCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGGAGAAAACCATGTTCTTCGTAAATCCGT                                                                                                                                                                                                                         ]


>consensus_14239#0 AACTAGTTTCCAAGGAGAGCAATCATCGCCTACATGTTACACTCGGCTCGTCATGTGCGG ATTTAAGCCTTAGAACAAAAACTTGTATATGTTAGGTGCTAGCTGGTGATCGCAGCTGGT TGGTACCTCTGGGCTAAGCTTCTCTCAGGAGTCCTTGCGTGATGTCGTCGACGGCGTACA CGCGGCCGTCCAAGCCACCAGGGCCGGCCGGAGAGCGGAGGCCTCCGCGGCTAGCCAAGG AGCTTGGCAGGATCGAGCCCAAGAAGCTCGGGATTGGGCTGGTCGCCGGCTGCTGCCTCG CTCTCCTCACCTACATCTCCTTTGCCCGCCTTTTCGCCATCTACTCGCCGGTCTTCGAGA GCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCTGG CTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATGTTGGTGAAGATGAGACGGACCGGA AAGTGCCAAGCTTTGCGGAGACGACAGAAAAGAATGAAGAGGAGGAAACAGTAACGAAAC CATCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGATGAGAACGGCGTTGATGAGGGCT TCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAAAGG AGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGA AGAAGATCCGACCGTACGCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCA TCATCAAGTCGGTCTCGTCGCCGGCCATCGCGCCGGCCTGCACGCGGACCCACAACGTCC CGGCGGTGGTCTTCTCCGTGGCCGGATACACCGACAACTTCTTCCACGACAACACGGACG TGAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)