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Oryza sativa
cluster # 14241 cluster # 14241       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14241#0 length = 1133 sequences # 12  
consensus_14241#1 length = 606 sequences # 1  
consensus_14241#2 length = 414 sequences # 2  

consensusID : consensus_14241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1133
fasta sequence
                              [GTGGATGGCCGGCGCGGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG-G-GA-G-GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCGTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTC-TTCACAAGC-T-GCGCACCGAATTGCCAGA-GGGGCCATTCTGCCTTTTG-TACATGCACAGCACTGTGCAGTCAGATGATAACAACCCTGGTATGTCAATCTTGAGGGGGGTCTATGAAGATCTTCCACCTGAATACAAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATCGCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGTTTGTATTGGAAAATCAAGTATGTTAGTCGGCTGGAGTATCTTTGGGGGGACATCAGAAAGGGGGAAGTTGAAATTCCAGATTTCGTGATTGATCATGATAAGATTCTTGAGCACCGACCACTGACAGACTATGGCATAGAACCAGATCCTCTGCAT-CTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTAATTACATCTTATGTCTTTTATGTTTTCTGTGAAGTTCTT]

[+] EMBL AK102153             [GTGGATGGCCGGCGCGGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG GCGA G GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCGTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTC TTCACAAGC T GCGCACCGAATTGCCAGA GGGGCCATTCTGCCTTTTG TACATGCACAGCACTGTGCAGTCAGATGATAACAACCCTGGTATGTCAATCTTGAGGGGGGTCTATGAAGATCTTCCACCTGAATACAAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATCGCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGTTTGTATTGGAAAATCAAGTATGTTAGTCGGCTGGAGTATCTTTGGGGGGACATCAGAAAGGGGGAAGTTGAAATTCCAGATTTCGTGATTGATCATGATAAGATTCTTGAGCACCGACCACTGACAGACTATGGCATAGAACCAGATCCTCTGCAT CTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTCTCGCAATTTGGTAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTAATTACATCTTATGTCTTTTATGTTTTCTGTGAAGTTCTT]
[+] EMBL OSS14559A            [           GCGCGGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGTCGGTCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCNTCAACCCGGCCGACCGGNAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GA GNGACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGAGG GCATCGTCCGCNTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSR3381A             [               GGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGNNANTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGNAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GA GAGACTTCTCCNACCTCGAAGAGCTCCAGGTCGTCCGCNTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCNTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTTAAGAAGTATGTTC TTCACAAGCTT GCGCACCGAATTTCCAAA GGGG CATTCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR20581A            [                                   CGTGAGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGNCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GA G GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSR15392B            [                                   CGTGAGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGNCGGCGNCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG N GA G GACTTCTCCGANCTCGAAGAGCTCCAGGTCGTCCGCGTNCAGGGCANCGACAGGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OS1471A              [                                       AGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGNCGCCGTGCTCNTTNTCCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCNCGACCTCTCCGCGCCCGTCGACGNG AA G GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCANCGACAGNGNCGNGAGGCGNATCGTCCGCGTCGTCGGCAGGTTCTTCCNTGCTCCTGTCATAGGTGGTGATCGTNTNAAGAAGTATGTTC TTNAGAAGC T GNGAACCGAATTNNCAGA GGGG CATTCTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSC1413A             [                                       AGGTGCGGCGGCGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GANG GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGA GNGCATCGTCCGCGTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTC TTCACAAGC T GCGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU067850             [                                                  CGGCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GAGG GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGAGG GCATCGTCCGCGTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTC TTCACAAGN T GCGCACCGAATTGCCAGA GGGGCCATTNTGCCTTTTG TACATGNACAG ACTGTGAAGTCAGATGATAACAACCCTGGTATGT AATTTTGAGGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU094755             [                                                    GCGGCGGCCATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGCGGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCTCCCCGACCTCTCCGCGCCCGCCGACG G GA G GACTTCTCCGACCTCGAAGAGCTCCAGGTCGTCCGCGTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCGTCGTCGGCAGGTTCTTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTCTTTCACAAGC TGGCGCACCGAATTGCCAGAGGGGGCCATTCTGCCTTTTGTTACATGCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU173502             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGATAAGATTCTTGAGCACCGACCACTGACAGACTATGGCATAGAACCAGATCCTCTGCAT CTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTAAaaa                                   ]
[+] EMBL AU029717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCAGATCCTCTGCATNCTTGCTGATATGCCTGCTGTGGGGTACTCGNTCGGAAGGTNTGAAGACAAATGGTCTCCTGAAGATCGNTGGTATTCTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTAATTAaaaaaaaa                           ]
[+] EMBL CA765850             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GATGGTATCCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATGGGGCTGCCTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAACACTATGCCCAGTCGAAaaa                                                                                             ]


>consensus_14241#0 GTGGATGGCCGGCGCGGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGGCGGC CATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGC GGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCT CCCCGACCTCTCCGCGCCCGCCGACGGGAGGACTTCTCCGACCTCGAAGAGCTCCAGGTC GTCCGCGTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCGTCGTCGGCAGGTTC TTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTCTTCACAAGCTGCGC ACCGAATTGCCAGAGGGGCCATTCTGCCTTTTGTACATGCACAGCACTGTGCAGTCAGAT GATAACAACCCTGGTATGTCAATCTTGAGGGGGGTCTATGAAGATCTTCCACCTGAATAC AAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATC GCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGTTTGTATTGGAAAATCAAGTATGTTAGT CGGCTGGAGTATCTTTGGGGGGACATCAGAAAGGGGGAAGTTGAAATTCCAGATTTCGTG ATTGATCATGATAAGATTCTTGAGCACCGACCACTGACAGACTATGGCATAGAACCAGAT CCTCTGCATCTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAA TGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGATAGCTTGATG GTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTA TGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGT AGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATCTCCGTCGAA CACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGA GAACTGTAAGCGTAATTACATCTTATGTCTTTTATGTTTTCTGTGAAGTTCTT



consensusID : consensus_14241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence
                              [CACCTGAATACAAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATCGCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGGTCAGTATTGTCTCTAATATTTTCTGTTTTGCTGTTTCCCTATCTTATTCAGCAGAAAAATTAATGATTAAACTCCACCATATTGTTGCACCTCATAGACTAGATATTGTAGTGGTAAGTAGACCTGTTTTAAATCGATAGGCAGGCTAGTAAATCAGCGTGCTTTCTTTTATCTGCAGTCTCTGGTACTGACATTTTGGTATTGATATTAGTTGAAACCTAAAATATGCCGCTAGCAATGGACACCAGAAGTTTTTTTTTCTGACAGCAAGGATTTTAGCTCTACCAGAACCTGCCTTACTGCAATTTGATGCACAAGTAATCTCATAACCATGCAAAACCTACTCAAAGTCTCAAATGTTACCCATACATTACTCTAGCAAATATCTTGAGAACATTTGTGAAATAGATCACTGACTTTTCCTCCTAAAGCATTTACATCTCCAGAACATCNNNNNNCACCTGANGTGGCAGCTGTACANTNNNTCTCCAAATTTTGCCTN]

[+] EMBL CF196816             [CACCTGAATACAAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATCGCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGGTCAGTATTGTCTCTAATATTTTCTGTTTTGCTGTTTCCCTATCTTATTCAGCAGAAAAATTAATGATTAAACTCCACCATATTGTTGCACCTCATAGACTAGATATTGTAGTGGTAAGTAGACCTGTTTTAAATCGATAGGCAGGCTAGTAAATCAGCGTGCTTTCTTTTATCTGCAGTCTCTGGTACTGACATTTTGGTATTGATATTAGTTGAAACCTAAAATATGCCGCTAGCAATGGACACCAGAAGTTTTTTTTTCTGACAGCAAGGATTTTAGCTCTACCAGAACCTGCCTTACTGCAATTTGATGCACAAGTAATCTCATAACCATGCAAAACCTACTCAAAGTCTCAAATGTTACCCATACATTACTCTAGCAAATATCTTGAGAACATTTGTGAAATAGATCACTGACTTTTCCTCCTAAAGCATTTACATCTCCAGAACATCNNNNNNCACCTGANGTGGCAGCTGTACANTNNNTCTCCAAATTTTGCCTN]


>consensus_14241#1 CACCTGAATACAAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTA GGTTGGCCATCGCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGGTCAGTATTGTCTCTAA TATTTTCTGTTTTGCTGTTTCCCTATCTTATTCAGCAGAAAAATTAATGATTAAACTCCA CCATATTGTTGCACCTCATAGACTAGATATTGTAGTGGTAAGTAGACCTGTTTTAAATCG ATAGGCAGGCTAGTAAATCAGCGTGCTTTCTTTTATCTGCAGTCTCTGGTACTGACATTT TGGTATTGATATTAGTTGAAACCTAAAATATGCCGCTAGCAATGGACACCAGAAGTTTTT TTTTCTGACAGCAAGGATTTTAGCTCTACCAGAACCTGCCTTACTGCAATTTGATGCACA AGTAATCTCATAACCATGCAAAACCTACTCAAAGTCTCAAATGTTACCCATACATTACTC TAGCAAATATCTTGAGAACATTTGTGAAATAGATCACTGACTTTTCCTCCTAAAGCATTT ACATCTCCAGAACATCNNNNNNCACCTGANGTGGCAGCTGTACANTNNNTCTCCAAATTT TGCCTN



consensusID : consensus_14241#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 414
fasta sequence
                              [GACTATGGCATAGAACCAGATCCTCTGCATCTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTNTCCTGAAGATCGATGGTATTNTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTNTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATNTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTTATTNAAAAAAAAAAAAAAA]

[+] EMBL AU184191             [GACTATGGCATAGAACCAGATCCTCTGCATCTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTNTCCTGAAGATCGATGGTATTNTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTNTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATNTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTTATTNAAAAAAAAAAAAAAA]
[+] EMBL AU184361             [   TATGGCATAGAACCAGATCCTCTGCATCTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGAAGACAAATGGTNTCCTGAAGATCGATGGTATTNTCGCAATTACATGTGAGAATTTGATAGCTTGATGGTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCATATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATNTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATATAGTGATTGAGAACTGTAAGCGTAATTAAAAAAAAAAAAAAAA]


>consensus_14241#2 GACTATGGCATAGAACCAGATCCTCTGCATCTTGCTGATATGCCTGCTGTGGGGTACTCG CTCGGAAGGTATGAAGACAAATGGTNTCCTGAAGATCGATGGTATTNTCGCAATTACATG TGAGAATTTGATAGCTTGATGGTATTNTCGCAATTTGATAGCCGAAGCATTCAAGATTCA TGTATATATAATAAAACTGTATGGTAATGTTGTGTGATTGTCAGTTTGTTGGGAATTCAT ATAGGGCTGCTTCGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTT CCCAATTTAATNTCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGA CAGTCGACATATAGTGATTGAGAACTGTAAGCGTTATTNAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14241#0      GTGGATGGCCGGCGCGGGGATCGACCGCGTGACGGCGTGAGGTGCGGCGGCGGCGGCGGC 60
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      CATGGCGCTCGCGCAGGGCACCGGCGACTTCTCCGTGGTGGTGCTGGGCTCCGACTTCGC 120
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      GGTCGACGCCGGCGCCGTGCTCCTCAACCCGGCCGACCGGGAGGAGTGGCACGACTGCCT 180
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      CCCCGACCTCTCCGCGCCCGCCGACGGGAGGACTTCTCCGACCTCGAAGAGCTCCAGGTC 240
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      GTCCGCGTCCAGGGCACCGACAGGGCCGGGAGGCGCATCGTCCGCGTCGTCGGCAGGTTC 300
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      TTCCCTGCTCCTGTCATAGGTGGTGATCGTCTGAAGAAGTATGTTCTTCACAAGCTGCGC 360
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      ACCGAATTGCCAGAGGGGCCATTCTGCCTTTTGTACATGCACAGCACTGTGCAGTCAGAT 420
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      ------------------------------------------------------------
                                                                                   

consensus_14241#0      GATAACAACCCTGGTATGTCAATCTTGAGGGGGGTCTATGAAGATCTTCCACCTGAATAC 480
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      -------------------------------------------------CACCTGAATAC 11
                                                                                   

consensus_14241#0      AAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATC 540
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      AAGGAGAGACTGCAGATCTTATACTTCTTGCATCCTGGGCTTCGCTCTAGGTTGGCCATC 71
                                                                                   

consensus_14241#0      GCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGTTTGTATTGGAAAATCAAGTATGTTAGT 600
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      GCCACGCTTGGCAGGCTCTTTTTAAGTGGAGGGTCAGTATTGTCTCTAATATTTTCTGTT 131
                                                                                   

consensus_14241#0      CGGCTGGAGTATCTTTGGGGGGACATCAGAAAGGGGGAAGTTGAAATTCCAG-ATTTCGT 659
consensus_14241#2      ------------------------------------------------------------
consensus_14241#1      TTGCTGT--TTCCCTATCTTATTCAGCAGAAAAATTAATGATTAAACTCCACCATATTGT 189
                                                                                   

consensus_14241#0      GATTGATCAT-GATAAGATTCTTGAGCACCGACCACTGACAGACTATGGC-ATAGA---A 714
consensus_14241#2      -----------------------------------------GACTATGGC-ATAGA---A 15
consensus_14241#1      TGCACCTCATAGACTAGATATTGTAGTGGTAAGTAGACCTGTTTTAAATCGATAGGCAGG 249
                                                                   **   * ****     

consensus_14241#0      CCAGATCCTCTGCAT-CTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGA 773
consensus_14241#2      CCAGATCCTCTGCAT-CTTGCTGATATGCCTGCTGTGGGGTACTCGCTCGGAAGGTATGA 74
consensus_14241#1      CTAGTAAATCAGCGTGCTTTCTTTTATCTGCAGTCTCTGGTACTGACATTTT-GGTATTG 308
                       * **    ** ** * *** **  ***      * *  ******  *      *****  

consensus_14241#0      AGACAAATGGTCTCCTGAAGATCGATGGTATTCTCGCAATTACATGTGAGAATTTGATAG 833
consensus_14241#2      AGACAAATGGTNTCCTGAAGATCGATGGTATTNTCGCAATTACATGTGAGAATTTGATAG 134
consensus_14241#1      ATATTAGTTGAAACCTAAAATATGCCGCTA-----GCAATGGACACCAGAAGTTTTTTTT 363
                       * *  * * *   *** **    *  * **     *****          * ***  *  

consensus_14241#0      CTTGATGGTATTCTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAA 893
consensus_14241#2      CTTGATGGTATTNTCGCAATTTGATAGCCGAAGCATTCAAGATTCATGTATATATAATAA 194
consensus_14241#1      TCTGACAGCA-----AGGATTT--TAGCT----CTACCAGAACCTGCCTTACTGCAATTT 412
                         ***  * *        ****  ****     *   **  *      *   *  ***  

consensus_14241#0      AACTGTATGGTAATGTTGTGTGATTGTCAG-TTTGTTGGGAAT-TCATATAGGGCTGCTT 951
consensus_14241#2      AACTGTATGGTAATGTTGTGTGATTGTCAG-TTTGTTGGGAAT-TCATATAGGGCTGCTT 252
consensus_14241#1      GATGCACAAGTAATCTCATAACCATGCAAAACCTACTCAAAGTCTCAAATGTTACCCATA 472
                        *       ***** *  *     **  *    *  *   * * *** **    *   * 

consensus_14241#0      CGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATC 1011
consensus_14241#2      CGGCATCGTAGGGTATATATTGCATGCAAAAGGCATACATTTCAATTTCCCAATTTAATN 312
consensus_14241#1      CATTACTCTAGCAAATATCTTG-----AGAACATTTGTGAAATAGATCACTGACTTTTCC 527
                       *   *   ***   **** ***     * **    *       *  *  *  * **    

consensus_14241#0      TCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATAT 1071
consensus_14241#2      TCCGTCGAACACTATGCCCAGTCGAACACTATGCCTAATGTTGTTTGACAGTCGACATAT 372
consensus_14241#1      TCC-TAAAGCATTTACATCTCCAGAACATCNNNNNNCACCTGANGTGGCAGCTG-TACAN 585
                       *** *  * ** *     *    *****         *  *    ** ***  *  * * 

consensus_14241#0      AGTGATTGAGAACTGTAAGCGTAATTACATCTTATGTCTTTTATGTTTTCTGTGAAGTTC 1131
consensus_14241#2      AGTGATTGAGAACTGTAAGCGTTATTNAAAAAAAAAAAAAAA------------------ 414
consensus_14241#1      TNNNTCTCCAAATTTTGCCTN--------------------------------------- 606
                             *   ** * *                                            

consensus_14241#0      TT 1133
consensus_14241#2      --
consensus_14241#1      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)