cluster # 1425

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Oryza sativa
cluster # 1425 cluster # 1425 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1425#0 length = 476 sequences # 1

consensus_1425#1 length = 371 sequences # 1

consensusID : consensus_1425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [TTTTTTTTTTAGGTTACAATATCTATAGTAAAATTTTATTCGACATCACAAGAGCATTACATAGTATCCAATACAATCATGTCTCCTTATCCTATCATGTTTTCGAATTCTTAATCTTATCAAGAAAACAATCTCATGCTTTCGAATCTGGTTTCCCGAGAACCCTTCGCAAGGNATGATCCCCGCCAATTTATTATTGACTTGTTTATTAACCAGGTCCCCATTTGTGTTCTGGGACACTTACATTGAACGANCTGACCACCCAAGTGTCAACTCTCCCCTAAAACATACTTTCCAAACCCTACAATGGATGAAAGATGAGAAAAATCACCAGGGTCATTCGGACTGAATACNTCCCACCTTAAATTGTTTCTGTACGAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGTATGANACCTCTCTGTTATGATCCNNATATTAAATTACAGTGTACATCNAAGCCGAT]

[+] EMBL AA753447             [TTTTTTTTTTAGGTTACAATATCTATAGTAAAATTTTATTCGACATCACAAGAGCATTACATAGTATCCAATACAATCATGTCTCCTTATCCTATCATGTTTTCGAATTCTTAATCTTATCAAGAAAACAATCTCATGCTTTCGAATCTGGTTTCCCGAGAACCCTTCGCAAGGNATGATCCCCGCCAATTTATTATTGACTTGTTTATTAACCAGGTCCCCATTTGTGTTCTGGGACACTTACATTGAACGANCTGACCACCCAAGTGTCAACTCTCCCCTAAAACATACTTTCCAAACCCTACAATGGATGAAAGATGAGAAAAATCACCAGGGTCATTCGGACTGAATACNTCCCACCTTAAATTGTTTCTGTACGAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGTATGANACCTCTCTGTTATGATCCNNATATTAAATTACAGTGTACATCNAAGCCGAT]




>consensus_1425#0
TTTTTTTTTTAGGTTACAATATCTATAGTAAAATTTTATTCGACATCACAAGAGCATTAC
ATAGTATCCAATACAATCATGTCTCCTTATCCTATCATGTTTTCGAATTCTTAATCTTAT
CAAGAAAACAATCTCATGCTTTCGAATCTGGTTTCCCGAGAACCCTTCGCAAGGNATGAT
CCCCGCCAATTTATTATTGACTTGTTTATTAACCAGGTCCCCATTTGTGTTCTGGGACAC
TTACATTGAACGANCTGACCACCCAAGTGTCAACTCTCCCCTAAAACATACTTTCCAAAC
CCTACAATGGATGAAAGATGAGAAAAATCACCAGGGTCATTCGGACTGAATACNTCCCAC
CTTAAATTGTTTCTGTACGAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGT
ATGANACCTCTCTGTTATGATCCNNATATTAAATTACAGTGTACATCNAAGCCGAT

consensusID : consensus_1425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [ACGGAVTGKCCCCCKYAYYTYTAAACTCTCCCCWAAAAAAWWRTTTCCAAACCCTAKAATGGATGAAAGTTGAYAAAAATCCKCSAGGGTKATTCGBACTGAAATACGTTCCKCCTAAAATTGTTTTCTGTACYAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGTAATYACACCCTTCTCTGTAATYARCCCCAGATATTAGATTAGCAGGTGTAACATCAAAAGCCGGATTCCAGACAGATATTCCTGAGGCAGCAACCTGCTCTCCAAGTCCTCCACGTGAATTCAACAATTCCTTGGGAGATCTCTCCTCAATAACAATTTGTTGTCCAGAGAAAAGTGATAGATCAACGGAAGTCAA]

[-] EMBL AA752686             [ACGGAVTGKCCCCCKYAYYTYTAAACTCTCCCCWAAAAAAWWRTTTCCAAACCCTAKAATGGATGAAAGTTGAYAAAAATCCKCSAGGGTKATTCGBACTGAAATACGTTCCKCCTAAAATTGTTTTCTGTACYAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGTAATYACACCCTTCTCTGTAATYARCCCCAGATATTAGATTAGCAGGTGTAACATCAAAAGCCGGATTCCAGACAGATATTCCTGAGGCAGCAACCTGCTCTCCAAGTCCTCCACGTGAATTCAACAATTCCTTGGGAGATCTCTCCTCAATAACAATTTGTTGTCCAGAGAAAAGTGATAGATCAACGGAAGTCAA]




>consensus_1425#1
ACGGAVTGKCCCCCKYAYYTYTAAACTCTCCCCWAAAAAAWWRTTTCCAAACCCTAKAAT
GGATGAAAGTTGAYAAAAATCCKCSAGGGTKATTCGBACTGAAATACGTTCCKCCTAAAA
TTGTTTTCTGTACYAAAGCTTTTATGTCAAAAGCATCACCAGCTGCTGTCTTTGTAATYA
CACCCTTCTCTGTAATYARCCCCAGATATTAGATTAGCAGGTGTAACATCAAAAGCCGGA
TTCCAGACAGATATTCCTGAGGCAGCAACCTGCTCTCCAAGTCCTCCACGTGAATTCAAC
AATTCCTTGGGAGATCTCTCCTCAATAACAATTTGTTGTCCAGAGAAAAGTGATAGATCA
ACGGAAGTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1425#0      TTTTTTTTTTAGGTTACAATATCTATAGTAAAATTTTATTCGACATCACAAGAGCATTAC 60
consensus_1425#1      ------------------------------------------------------------
                                                                                  

consensus_1425#0      ATAGTATCCAATACAATCATGTCTCCTTATCCTATCATGTTTTCGAATTCTTAATCTTAT 120
consensus_1425#1      ------------------------------ACGGAVTGKCCCCCKYAYYTYTAAACTCTC 30
                                                     *           *  *    *** **   

consensus_1425#0      CAAGAAAACAATCTCATGCTTTCGAATCTGGTTTCCCGAGAACCCTTCGCAAGGNATGAT 180
consensus_1425#1      CCCWAAAAAAWW-----RTTTCCAAACCCTAKAATGGATGAAAGTT--GAYAAAAATCCK 83
                      *   **** *         ** * ** *           ***   *  *  *   **   

consensus_1425#0      CCCCGCCAATTTATTATTGACTTGTTTATTAACCAGGTCCCCATTTGTGTTCTGGGACAC 240
consensus_1425#1      CSAGGGTKATTCGB-ACTGAAATACGTTCCKCCTAAAATTGT-TTTCTGTACYAAAGCTT 141
                      *   *   ***    * ***  *   *     * *        *** *** *     *  

consensus_1425#0      TTACATTGAACGANCTGACCACCCAAGTGTCAACTCTCCCCTAAAACATACTTTCCAAAC 300
consensus_1425#1      TTATGTCAAAAGCATCA-----CCAGCTGCTGTCTTTGTAATYACACCC-TTCTCTGTAA 195
                      ***  *  ** *          ***  **    ** *    * * **    * **   * 

consensus_1425#0      CCTACAATGGATGAAAGATGAGAAAAATCACCAGGGTCATTCGGACTGAATACNTCCCAC 360
consensus_1425#1      TYARCCCCAGATATTAGATTAGCAGGTGTAACATCAAAAGCCGGATTCCAGACAGATATT 255
                          *    ***   **** ** *     * **     *  **** *  * **       

consensus_1425#0      CTTAAATTG----TTTCTGTACGAAAGCTTTTATGTCAAA--AGCATCACCAGCTGCTGT 414
consensus_1425#1      CCTGAGGCAGCAACCTGCTCTCCAAGTCCTCCACGTGAATTCAACAATTCCTTGGGAGAT 315
                      * * *          *     * **  * *  * ** **   * **   **    *   *

consensus_1425#0      CTTTGTATGANACCTCTCTGTTATGATCCNNATATTAAATTACAGTGTACATCNAAGCCG 474
consensus_1425#1      CTCTCCTCAATAACAATTTGTTGT---CCAGAGAA-AAGTGATAG-ATCAACGGAAGTCA 370
                      ** *     * * *  * **** *   **  * *  ** * * **  *  *   *** * 

consensus_1425#0      AT 476
consensus_1425#1      A- 371
                      *