cluster # 14274

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Oryza sativa
cluster # 14274 cluster # 14274 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14274#0 length = 1552 sequences # 11

consensus_14274#1 length = 731 sequences # 3
consensus_14274#2 length = 374 sequences # 1

consensusID : consensus_14274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1552
fasta sequence

                              [GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG-GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC--AAACA-AGCTATATGGA-GCTATATGTGCCTC-GCCAGCAATCGCCCTTGAACCACATGGCCTG-CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA-TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG-TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCAAAAAAAAAATGGGGGGGGGGGGTATATGATGA]

[+] EMBL CB630940             [GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATACTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGGATGTTGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB647955             [                        ACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGACATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGAGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK072614             [                                TCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAG                                            ]
[+] EMBL AK105855             [                                 CCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGA                                           ]
[+] EMBL OS14372A             [                                                                    ACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCNTCCGTCGANCCCGGCTCCGCGCAGGTCGGCGGAG CTGTGGGCGTCAAGCTGGNCGCGTACG GCTGCTCGACGACCTCGACGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK060016             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCACCTTTGGGTTGGGGGGGGGGGGTATATGATGA]
[-] EMBL CB630941             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCG                                                                                                                                                       ]
[+] EMBL CA767239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGGAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAGGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGNTGNGNTGGTACATACTACG NGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATNCTTTT                                                                                                                                                            ]
[-] EMBL CB647956             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC  AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTG                                  ]
[+] EMBL BM421607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cnTGATCAAGAAGCAAGCTGAGGCCGAAACANAGCTATATGGATGCTATATGTGCCTCNGCCAGC ATCGCCCTTGAACCACATGGCCTGCCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCCAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCCAAACCACTGGTCTTCATGTGAGTTGTGTTGTTACATACTACGCTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAAC CGACGTCTTGTTATGTGTACAACCGTAC AATCCAATAACAAGAGATGGATATTCCAAAAAAAAAA                       ]
[+] EMBL BM419584             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGAC ACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCAAAAAAAAAA                       ]




>consensus_14274#0
GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTC
AAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGC
GCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCG
ATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCC
GGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTGG
GGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTC
ATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAG
AACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCA
GCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCA
TTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGG
AACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAA
CAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAG
CATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACA
CCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATC
GACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAG
ATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAG
CAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAG
TCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCT
ATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCT
ACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTT
GTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTC
GCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTC
TTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAA
TATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTT
TGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAAT
AAAAAGAGATGGATATTGCAAAAAAAAAATGGGGGGGGGGGGTATATGATGA

consensusID : consensus_14274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 731
fasta sequence

                              [GACGAGACAAGGGGGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT-GCTCGTAGC-TGGTGTGGTGGAAAGCACTTCGTAATCC--TTTTTTTT-GGCTTTCTCTTCCACAATAAC-ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNNNGNNNNNNNN]

[+] EMBL CA767429             [GACGAGACAAGGGGGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT GCTCGTAGC TGGTGTGGTGGAAAGCACTTCGTAATCC  TTTTTTTT GGCTTTCTCTTCCACAATAAC ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAAGAGATG                                                       ]
[+] EMBL CA754279             [                                                                                                                                                                                                        GTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT GCTCGTAGC TGGTGTGGTGGAAAGCACTTCGTAATCC  TTTTTTTT GGCTTTCTCTTCCACAATAAC ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAAT AAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNNNGNNNNNNNN]
[+] EMBL D42820               [                                                                                                                                                                                                                                                                                               TGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACANCATAGTCAGACTCTGAATATGAGGCATCCTTTTGGCTCGTAGCTTGGTGTGGTGGAAAGCACTTCGTAATCCCTTTTTTTTTGGGCTTTCTCTTCCACAATTACNACGCNGTC                                                                                                 ]




>consensus_14274#1
GACGAGACAAGGGGGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTT
GGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCT
TAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGC
AAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGG
AGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAA
GGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAG
GGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTC
TCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCAT
GGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTC
TGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTT
TTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATG
CAATAAAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNN
NNGNNNNNNNN

consensusID : consensus_14274#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [TTGTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCTTTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTGGTCTTCATGTGAGTTGTGTTGTTACATNTACGTGTAAGACAACNCCATAGTCAGACTCTGAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCATTCGTAATCCTTTTTTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGCAATAAAAAGAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA]

[+] EMBL AU031059             [TTGTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCTTTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTGGTCTTCATGTGAGTTGTGTTGTTACATNTACGTGTAAGACAACNCCATAGTCAGACTCTGAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCATTCGTAATCCTTTTTTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGCAATAAAAAGAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA]




>consensus_14274#2
TTGTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCT
CTTTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCN
TGGTCTTCATGTGAGTTGTGTTGTTACATNTACGTGTAAGACAACNCCATAGTCAGACTC
TGAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCATTCGTAATCCTTTT
TTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGC
AATAAAAAGAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14274#0      GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTC 60
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      AAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGC 120
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      GCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCG 180
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      ATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCC 240
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      GGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTGG 300
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      GGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTC 360
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      ATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAG 420
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      AACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCA 480
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      GCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCA 540
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      TTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGG 600
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      AACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAA 660
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      CAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAG 720
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      CATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACA 780
consensus_14274#1      ------------------------------------------------------------
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      CCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATC 840
consensus_14274#1      -----------------------------------------------------GACGA-- 5
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      GACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAG 900
consensus_14274#1      GACAAGGG-GGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAG 64
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      ATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAG 960
consensus_14274#1      ATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAG 124
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      CAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAG 1020
consensus_14274#1      CAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAG 184
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      TCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCT 1080
consensus_14274#1      TCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCT 244
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      ATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCT 1140
consensus_14274#1      ATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCT 304
consensus_14274#2      ------------------------------------------------------------
                                                                                   

consensus_14274#0      ACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTT 1200
consensus_14274#1      ACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTT 364
consensus_14274#2      ----------------------------------------------------------TT 2
                                                                                 **

consensus_14274#0      GTC-GTTGATGGCAACCTAATCACCAG-CCAAGGTCCAGGCACATCC-ATGGAGTTCTCT 1257
consensus_14274#1      GTC-GTTGATGGCAACCTAATCACCAG-CCAAGGTCCAGGCACATCC-ATGGAGTTCTCT 421
consensus_14274#2      GTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCT 62
                       *** ****************** **** *******************  ***********

consensus_14274#0      CTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATG 1317
consensus_14274#1      CTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATG 481
consensus_14274#2      TTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTG 122
                        *********************************** ******************** **

consensus_14274#0      GTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCT 1377
consensus_14274#1      GTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCT 541
consensus_14274#2      GTCTTCATGTGAGTTGTGTTGTTACATN-TACGTGTAAGACAACNCCATAGTCAGACTCT 181
                       ***************************  *************** ***************

consensus_14274#0      GAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTT 1437
consensus_14274#1      GAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTT 601
consensus_14274#2      GAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCA-TTCGTAATCCTTTT 240
                       **** ** ************************ ************ **************

consensus_14274#0      TTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGC 1497
consensus_14274#1      TTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGC 661
consensus_14274#2      TTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGC 300
                       ***************** ************** *********** ***************

consensus_14274#0      AATAAAAA-GAGATGGATATTGCAAAAAAAAAATGGGGGGGGGGGGTATATGATGA---- 1552
consensus_14274#1      AATAAAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNN 721
consensus_14274#2      AATAAAAA-GAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAA 359
                       ******** ******* ******                                     

consensus_14274#0      ---------------
consensus_14274#1      NGNNNNNNNN----- 731
consensus_14274#2      AAAAAAAAAAAAANA 374