These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1693 fasta sequence [CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA-AGAAATGGACA-AGGAGCTGGACACGCA-CAGGGCGGAGCATGGT-CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA-AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCGGCACGAGGC] [+] EMBL AK068404 [CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAA ] [+] EMBL CB674208 [ CGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTT ] [+] EMBL CB664269 [ GCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCATAGCCTTGTGAAGAGGAACAAGAGGATGCTCGGGAA ] [+] EMBL CB649399 [ ATCCTCGACGGCGACGACGATGGCCGCCGCGACGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAGATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGACCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGANAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGAT ] [+] EMBL CB651304 [ TCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAGTCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAGGAGGATGTCAAGAAGGAAGCGGAGGCAAAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAAGGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGGGAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAAAGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAATTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCC ] [-] EMBL CB649400 [ ATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAACTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTT ] [-] EMBL CB674209 [ AATTAAATTGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCG ] [-] EMBL CB651305 [ GGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGAGTTTCTAGTATAAATCGAGCAAT ] [-] EMBL CB664270 [ TGTTTGATGTTCATAGGGGTTTCTATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA AGAAATGGACA AGGAGCTGGACACGCA CAGGGCGGAGCATGGT CCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCA AGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGT ] [+] EMBL BI805231 [ CTAATGTTGAGA GCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCACAGAAATGGACACAGGAGCTGGACACGCACCAGGGCGGAGCATGGTCCCAAAAACTCGACGAGTTCTTGAGGGTGGC ATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCACAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTAAAAAaaaaa ] [+] EMBL CF307977 [ GCTTGTTGTACGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTTTCTAGTATAAATCGAGCAATTTAC ] [-] EMBL CF326235 [ GTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATAAATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTTTGTTAATCATTGCATCCTTTGGGTTTTTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCGGCACGAGGC] consensusID : consensus_14291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 796 fasta sequence [TGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG-AGCTGTTATACATGCAGTGGGC-TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA] [+] EMBL CB680576 [TGCGGCAGCAAGAGCGAGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG AGCTGTTATACATGCAGTGGGC TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGAT ] [-] EMBL CB680577 [ AGAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGG AGCTGTTATACATGCAGTGGGC TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTAGGGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA] [+] EMBL AU085965 [ AGNCAGAAGAAAAGAGGTTGGAANCTGTTATACATGCATTGGGCTTAAGCATCNCAAAAAGCTGTCCAATTTCTTAAGGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGANCAAGGAAAAGGCATTTCAAGAATGGAAATCTGAACGCAGGGCTGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCAGTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCAAGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATATTGTTGCGGGAaaaaaaaaa ] consensusID : consensus_14291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGAGAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGNCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCGCTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGCTTTGGC] [+] EMBL C99585 [CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTTCAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGAGAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGGNCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCGCTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGCTTTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14291#0 CTCCAACCCCCCGCGCAGCCGAAGGAATCCTCGACGGCGACGACGATGGCCGCCGCGACG 60 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAGGAGCTCCAGCGCCAGCACCGCGAG 120 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 ATCAGCGAGCGCCTCCGAGACCCCCGCGGCCTCCGCCGCGGCGCGCCCGCCGCTGCAGGA 180 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 CCCGGCGGGCCCCGCCCACTTCGCGGATTCCCTAGACCAGCTGTGGATTTGGTGGACCAG 240 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 TCTGCGCCTAAGCGGAGGATTCTATCTGCAGTGGTTAAAGTGGAGGATACTGAAGCTAAG 300 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GAGGATGTCAAGAAGGAAGCGGAGGCAGAGGGGCCGGAGGGCGGTTCGGCTGCTGCTGAA 360 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GGCGGTGAGAGGAGGGATGGTGGGTTCAGGAGGGATGGGAGCCAGCGCATGCCGAGGAGG 420 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GAGTTTGATATGTCATTGCCAGAACCTCTCCCGAGGGAATTTCCCAAGGATGAGGATCAA 480 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 AGCCTTGTGAAGAGGAACAAGAGGATGCTGGGGAAGCTTCTTGTCGGTACATTAGAGAAA 540 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 TTTCAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTT 600 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ---CAGCAAGAGGACAAAAAACTGTCCAACACAGAGGCTTATATGCGCAGATCAGAGGTT 57 consensus_14291#0 CAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCAGCAAGAGCGA 660 consensus_14291#1 -------------------------------------------TGCGGCAGCAAGAGCGA 17 consensus_14291#2 CAGCGAAAGGCTGATCAAAAGGCTCGTGAGGAAAGTGAAAGGTTGCGGCANAAGAAGCGA 117 ******* * ***** consensus_14291#0 GAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 720 consensus_14291#1 GAGCAAGCAATAGAGAAGCGTAAGCGTGATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 77 consensus_14291#2 GAGCAAGCAATAGAGAAGCGTAANNNGNATATGATGCTGCGTGCTCGAGTAGCTGCTAAG 177 *********************** ******************************** consensus_14291#0 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 780 consensus_14291#1 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 137 consensus_14291#2 GCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTG 237 ************************************************************ consensus_14291#0 TCCAATTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAATTAAAT 840 consensus_14291#1 TCCAATTTCTTAAGG--------------------------------------------- 152 consensus_14291#2 TCCAATTTCTTAAGG--------------------------------------------- 252 *************** consensus_14291#0 TGAGGGAAGATGCGTTTCTGATTGTGCAAATCTTGATGTTTGATGTTCATAGGGGTTTCT 900 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 ATATCCATTTTGCTAAATTACACATTAGTATCTTTTTGAACATTATTGTTGTTTGTCAGG 960 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 ACAACTGCGGAACCACCAATTTACTACA-TGCCAGCT-AAACCAATAATTGATGATCCGG 1018 consensus_14291#1 ACAACTGCGGAACCACCAATTTACTACA-TGCCAGCT-AAACCAATAATTGATGATCCGG 210 consensus_14291#2 NCAACTGCGGAACCACCAATTTACTACAATGCCAGCTTAANCCATTAATTGATGATCCCG 312 *************************** ******** ** *** ************* * consensus_14291#0 CTATTGCTGAGGAGAAC-AAGGAAAAGGCATTTCAAGAAT-GGAAATCTGAACGCAGGGC 1076 consensus_14291#1 CTATTGCTGAGGAGAAC-AAGGAAAAGGCATTTCAAGAAT-GGAAATCTGAACGCAGGGC 268 consensus_14291#2 CTATTTCNTAGGGGGACCAAGGGAAANGCATTTCAAGGATTGGGAATTTNAACCGAAGGC 372 ***** * *** * ** **** *** ********** ** ** *** * *** * *** consensus_14291#0 TGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCA 1136 consensus_14291#1 TGAGCTAACTCAGTTTCAAAAGCAAGTCGAAGAACAGTACATGTCTAATGTTGAGAGGCA 328 consensus_14291#2 TTTGGC------------------------------------------------------ 378 * * consensus_14291#0 GTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA 1196 consensus_14291#1 GTTGGAAAGGATGCAGAATGCGCGGAATGCACGGAGGGGTAATGGTCCTTCAAACATGCA 388 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 AGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGT 1256 consensus_14291#1 AGAAATGGACAAGGAGCTGGACACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGT 448 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 TCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCT 1316 consensus_14291#1 TCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATATGGCCGTGGAAGATGAGCT 508 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGA 1376 consensus_14291#1 GATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGA 568 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 AGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATT 1436 consensus_14291#1 AGAAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATT 628 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCT 1496 consensus_14291#1 GTTGCGAGGTAGGCATCTAGGAGTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCT 688 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 GACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATAT 1556 consensus_14291#1 GACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGCTGTTATCAAGCCATATAT 748 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 TGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTGCGTT 1616 consensus_14291#1 TGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGGAAAAAAAGGA------------ 796 consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 TCTAGTATAAATCGAGCAATTTACTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1676 consensus_14291#1 ------------------------------------------------------------ consensus_14291#2 ------------------------------------------------------------ consensus_14291#0 AAACTCCGGCACGAGGC 1693 consensus_14291#1 ----------------- consensus_14291#2 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||