These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1467 fasta sequence [CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCTTATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGACTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTGTGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGT--A-------AAAAAAAAAAAAACTAAAA] [+] EMBL AK102265 [CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCTTATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGACTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTGTGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAAGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGT ] [-] EMBL CB653329 [ CACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA TTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAAT ] [-] EMBL CB647061 [ GAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA TTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTGTGCAGATGCTTTGTTTTCAAAATAATTTGATTCT ] [-] EMBL CA762824 [ TGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACCCAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGACTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCGTTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCCCGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCCCCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCCCAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCCCGGTTATTGTAATCTCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTCTGAAATTGTTGATTGTTGTAAAAAAAAAAAAAAAAAAA] [-] EMBL CF324666 [ GCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTTTGAAAAAAA A AAAAAAAAAAAAACT ] [-] EMBL CF325616 [ ATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTTTACTAGAGGATTGTACCACAATGTTGAGCTGTTTCATTCAGATCTGTATCTTTGCTTTTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTTTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATTTTGAAAAAAA A AAAAAAAAAAAAACT ] consensusID : consensus_14294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1404 fasta sequence [GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG-----AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT-CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC-TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAAAAAAGGG] [+] EMBL AK060914 [GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGGGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAATTTGATGTAATTTTGCAGATGCTTTGTTTTCAAAATAA ] [+] EMBL CB653328 [ CCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGGAGGACAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGACACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CCAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAAT ] [+] EMBL CB679863 [ CCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCTACAA GTGCTATTG ] [+] EMBL CB618800 [ CCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCTTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGG ] [+] EMBL CB647060 [ CCGCCGCCGCCGAGATGCGCCGCCACCACCGCCCACCACTCCCTCCTCGGCTCGCCCACCTGCCTCGCGCGCCCGCGGCGGCGGTGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCAGGCCGAGGCGCAGGCCAAGGTCTCGCTCATCCGGATTGGCACCCGCGGG AGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTCAGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGATCTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGATGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATATTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATTCATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGCTTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTTCAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATTGTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGG ] [-] EMBL CB618801 [ GCTACATTGTTGGCTCTAGGTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTCAGTGGACGAAATGCTTCCAGCAGTTGCT CAAGGTGCTATTGGAATAGCTTGCAGAAGCAGTGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTTGTAAAGGGATGTAATTTTGCAGATGCTTTGTTTTCAAAAAAAAAAAGGG] [+] EMBL CA765466 [ agggggGATGACACANGGNTGAATTACTTGTCCTCATTGAACCNTGAAGATACCAGATTAGCTGTTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGNGAGCTAGAATTTANAACGTGGTTCCACGGGTATTGNNATCCCTTGNATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGGTGTAACTTTGTAATTTGAT ] [+] EMBL BI806230 [ TACCTGTTGCATGTG AAGAGAATTC TG CAGTTCTTGATGCCAACT CCGAACTCC ATT CGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGCTGAAAGC AAGGCTGG CCTGGCTTCTTTGATAGCTTGCAATGAAAATAGAAATCCACC TTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCAC ATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCC ATGAATTCTGGAAGAGGCTTTT C GCC ATTATG TGTAACTTTGTAATTTGATGTAAaa ] [-] EMBL CB683496 [ TTGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGCATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGC TTCACCTGATGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGAGATGGGTAAAGATGCTGGCCACGAGTTGAAAGCAAAGGCTGGCCTTGGCTTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGATTTTTTTTGGTCCCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTCAGATCTGTATCTTTGCTTCTTTTAGCAAGGTGA ] consensusID : consensus_14294#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGCATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGATGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGAGAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTCAGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT] [-] EMBL CB618802 [GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGCATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGATGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGAGAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAGCTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGATTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTCAGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGGTTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGTTGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14294#1 GTCTCCTCCCCCTCCCTCTCGCTCGCATCTTCCCCGGAGATGCCGCCGCCGCCGAG---- 56 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 -CTTTTTTTTTCTGATTTTAACTTGGATCTCGTGTAAATTTTGCATCCACATTAAACTCT 59 consensus_14294#1 -ATGCG----CCGCCACCACCGCCC--ACCACTCCCTCCTCGGC-TCGCCC----ACCTG 104 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TATGAGGAATTCACAAGAATTGTTATGGTTGCTCTCTTTTCAATATTGACTTGAAAGTGA 119 consensus_14294#1 CCTCGCGCGCCCGCGGCGGCGG------TGCTGCCCCGTGCGCGCCGCCGTCGCCGTCCA 158 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 CTTTATGGTTGCGAAAAAGGGACTTTCTTTCTTTTCTTTGTTTTTAACAATTTTTTCTTG 179 consensus_14294#1 -GGCCGAGGCGCAGGCCAAGGTCTCGC-------TCATCCGGATTGGCACCCGC----GG 206 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TGATAGAGTAGCTTATTTGAGATATGCAAGTATGTAATTCAAATTATTGGCTGTATAGGA 239 consensus_14294#1 GAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTC 266 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 CAGTCCTCTTGCACTGGCACAAGCTCATGAAACCCGAGACAAGCTGAAGGCTGCACACTC 299 consensus_14294#1 AGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGAT 326 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 AGAGTTAGCCGAGGAGGGGGCCGTTGAGATTGTCATCATTAAGACCACAGGAGACATGAT 359 consensus_14294#1 CTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGA 386 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 CTTGGACAAACCCCTGGCAGATATAGGTGGCAAGGGTTTATTCACCAAGGAGATCGATGA 419 consensus_14294#1 TGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATA 446 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TGCACTTTTGCAGGGAAGGATTGACATTGCCGTCCACTCGATGAAAGATGTTCCAACATA 479 consensus_14294#1 TTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATT 506 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TTTACCAGAAGGCACGATATTGCCTTGTAATCTCCCACGGGAAGATGTGAGAGATGCATT 539 consensus_14294#1 CATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGC 566 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 CATATGCTTGACTGCAAGTTCCCTTGCGGAGCTTCCTGCTGGCAGTGTTGTTGGAAGTGC 599 consensus_14294#1 TTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTT 626 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TTCTCTGCGTAGACAATCTCAAATTCTCTACAAATATCCATCACTCAAAGTTGTTAACTT 659 consensus_14294#1 CAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATT 686 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 CAGAGGAAATGTTCAAACACGATTGAGGAAACTCAAAGAAGGAGATGTCCATGCTACATT 719 consensus_14294#1 GTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTC 746 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 GTTGGCTCTAGCTGGACTAAAACGCTTAAACATGGCAGAAACTGCGACATCTGTATTGTC 779 consensus_14294#1 AGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAG 806 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 AGTGGACGAAATGCTTCCAGCAGTTGCTCAAGGTGCTATTGGAATAGCTTGCAGAAGCAG 839 consensus_14294#1 TGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGT 866 consensus_14294#2 ------------------------------------------------------------ consensus_14294#0 TGATGACACAATGATGAATTACTTGTCCTCATTGAACCATGAAGATACCAGATTAGCTGT 899 consensus_14294#1 TGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGC 926 consensus_14294#2 -GCATGTGAAAGAGAATTTTTGTCAGTTCTTCATGGCAAGTGCGGAACTCCAATTGCGGC 59 consensus_14294#0 TGCATGTGAAAGAGAATTCTTGTCAGTTCTTGATGGCAACTGCCGAACTCCAATTGCGGC 959 ***************** ************ ******* *** **************** consensus_14294#1 ATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGA 986 consensus_14294#2 ATATGATTTTAGTGACAAGGATGGGAATCGTTCATTCGGAGGGCTATGGGCTTCTCCTGA 119 consensus_14294#0 ATATGCTTCTCGTGACAAGGATGGGAATTGTTCATTCCGAGGGCTATTGGCTTCACCTGA 1019 ***** ** * ***************** ******** ********* ****** ***** consensus_14294#1 TGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGA 1046 consensus_14294#2 TGGATCTACAGTATATGAGAATTGGAGAAATGGACCTTAAGATTTTGATATCATGGTTGA 179 consensus_14294#0 TGGATCTACAGTATATGAGACTTCGAGAACTGGACCTTATGATTTCGATATCATGGTTGA 1079 ******************** ** ***** ********* ***** ************** consensus_14294#1 GATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAG 1106 consensus_14294#2 GAAGGGTAAAGACGTTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGATTTTTTGATAG 239 consensus_14294#0 GATGGGTAAAGATGCTGGCCACGAGCTGAAAGCAAAGGCTGGCCCTGGCTTCTTTGATAG 1139 ** ********* * ********************************* ** ******** consensus_14294#1 CTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA 1166 consensus_14294#2 CTTGCAATGAAAATAGAAATCCACCATTGGCCAAATAGATTGTTGAGTGGATTATTTTGA 299 consensus_14294#0 CTTGCAATGAAAATAGAAATCCACCATTGGCCAACTAGAGTGTTGAGTGGATTATTTTGA 1199 ********************************** **** ******************** consensus_14294#1 TTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTC 1226 consensus_14294#2 TTTTTTTTTGTACCCTAGTTATACTAGAGGATTGTACCACAATGTTGAGGTGTATCATTC 359 consensus_14294#0 TTTTTTTTTGTACCCTAGTTCTACTAGAGGATTGTACCACAATGTTGAGCTGTCTCATTC 1259 ******************** **************************** *** ****** consensus_14294#1 AGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGG 1286 consensus_14294#2 AGATATGTATTTTGGATTCTTTTAGCAAGGCGAGCTAGAATTTAGAAGGTGGTTCCACGG 419 consensus_14294#0 AGATCTGTATCTTTGCTTCTTTTAGCAAGGTGAGCTAGAATTTAGAACGTGGTTCCACGG 1319 **** ***** ** * ************** **************** ************ consensus_14294#1 TTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGT 1346 consensus_14294#2 TTATTGTAATCCCTTGTATTTCCAATGAATTGTGGAAGAGGCTTTTGCGGCCAATTATGT 479 consensus_14294#0 TTATTGTAATCCCTTGTATTTCCAATGAATTCTGGAAGAGGCTTTTGCGGCCAATTATGT 1379 ******************************* **************************** consensus_14294#1 TGTAACTTTGTA-ATTTGA-TGTAATTTTGCAGATGCTTTGTTTTCAAAATAAAAAAGGG 1404 consensus_14294#2 TGTAACTTGGTACATTAGACTGTAATTTTGCAGACGCTT--------------------- 518 consensus_14294#0 TGTAACTTTGTA-ATTTGA-TGTAATTTTGCAGATGCTTTGTTTTCAAAATAATTTGATT 1437 ******** *** *** ** ************** **** consensus_14294#1 ------------------------------ consensus_14294#2 ------------------------------ consensus_14294#0 CTGAAATTGTAAAAAAAAAAAAAACTAAAA 1467 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||