These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 822 fasta sequence [TTCTTTTTAGTGATACTACAATTAATAACTTCACATATTTCTCACATTTTCTCT-TCTCATACATCC-T-GCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAG-ACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC-TGGTAGTTTGCAAGCTAGCAGTACTTGT-AAACCACATT-ATTGAA-AGGGACTACCGC-TGCTTTAAATAATACCGT-CATGGTCTAT-ACAT-ATGACATGTGCATAGATGTATGGTTTT-GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT-TTGCTGGTGAGCCCATCACA-AT-CAT-CACTTTACCAACGGCCTTCCTGTCTCTCA--GGGCTGCGAA-AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTG-AAGTAGCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACTTTCCATAATACTTTCCTTGCTTGAGTCAATTACATGGTCAGCTCCTATAGTCTTGAGATAC] [+] EMBL CB665356 [TTCTTTTTAGTGATACTACAATTAATAACTTCACATATTTCTCCCCTTTTCTCT TCTCATACATCC T GCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAG ACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC TGGTAGTTTGCAAGCTAGCAGTACTTGT AAACCACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CAT CACTTTACCAACGGCCTTCCTGTCTCTCA GGGCTGCGAA AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTG AAGTAGCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACTTTCCATAATACTTTCCTTGCTTGAGTCAATTACATGGTCAGCTCCTATAGTCTTGAGATAC] [+] EMBL CB642040 [ ctttttttTTAATAACTTCACATATTTCTCACATTTTCTCTCTCTCATACATCC T GCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAG ACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC TGGTAGTTTGCAAGCTAGCAGTACTTGT AAACCACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CAT CACTTTACCAACGGCCTTCCTGTCTCTCA GGGCTGCGAA AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTG AAGTAGCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTG ] [+] EMBL CF325708 [ ATAACTTCACATATTTCTCACATTTTCTCT TCTCATACATCC T GCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAGTACTTTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC TGGTAGTTTGCAAGCTAGCAGTACTTGT AAACCACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CA ] [+] EMBL CB653219 [ AACTTCACATATTTCTCACATTTTCTCT TCTCATACATCC T GCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAG ACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC TGGTAGTTTGCAAGCTAGCAGTACTTGT AAACCACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CAT CACTTTACCAACGGCCTTCCTGTCTCTCA GGGCTGCGAA AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTG AAGTAGCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACTTTCCATAATACTTTCCTTGCTTGAGTCAATTACATGGTCAGCT ] [-] EMBL BM421534 [ ttTTTCTCACATTTTCTCT TCTCATACATCCGG GCAGCATGGGTACACAGGGTCGGTTACATTGGAGAAGCCAG ACATTACAGGGGACGGGCCAACCTACAGATAACTCTATTTTATTTTTCAAATGTATTCTCCACTAATCTACATACATAAAATAATTCAGGTCTCGTGGTAGTTGGCAAGCTAGCAGTACTGGTCAAACCACATTCATTGAACAGGGACTACCGCGTGCTTTAAATAATACCGTCCAGGGTCTATCACATCATGACATGTGCATAGATGTATGGTTTTCGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATTATNGCTGGTGAGCCCATCACACATCCATCCACTTTACCAACGGCCTTCCTGTCTCTCAGGGGGCTGCGAACAGCGAGATGTGCCTCAGGGAGCCTGTAAG ] [-] EMBL BM037736 [ ttTTTCTCACATTTTCTCT TCTCATACATCC TGGCAGCA TGGTACACAGTGTCGGTTACATTGCAGAAGCCAG ACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTC TGGTAG TTGCAAGCTAGCAGTACTTGT AAACCACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CAT CACTTTACCAACGGCCTTCCTGTCTCTCA GGGCTGCGAA AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAAGTAGCTTCCCCAGTACAAACCATGAA TGTCCAATTCTTAACAAGAGCGATGTTGGCTCGAATAATTGGTACATC ] [+] EMBL CB665355 [ CACATT ATTGAA AGGGACTACCGC TGCTTTAAATAATACCGT CATGGTCTAT ACAT ATGACATGTGCATAGATGTATGGTTTT GAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATT TTGCTGGTGAGCCCATCACA AT CAT CACTTTACCAACGGCCTTCCTGTCTCTCA GGGCTGCGAA AGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTG AAGTACCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCACCACCTTTGAGGC ] consensusID : consensus_14302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCAAAAGCACCGCCCGCCGCCGTCGCCGCGACGCCGCCTAGAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGCGAGGCCTCCCCGTTCGCGCCGGTCACCGGGGACCACCCGGCGCCGGCGCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCACCTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTCCGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCCGCCCCGGGGACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAGAAGCAGCTATTTTCGGTGCCTGATGGATGTGACCTTGTTGCTGCTGGAGCATTGCCTGTTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTGAACTAAAGGCTGGCCAGGTGCTACTTGCTCTGGGTGCTGCTGGTGGTGTCGGAGCATCTGCTGTACAAATAGGAAAAGTTTGTGGTGCTGCTGTTATTGCAGTTGCTAGGGGGAA] [+] EMBL CA755773 [CCAAAAGCACCGCCCGCCGCCGTCGCCGCGACGCCGCCTAGAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGCGAGGCCTCCCCGTTCGCGCCGGTCACCGGGGACCACCCGGCGCCGGCGCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCACCTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTCCGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCCGCCCCGGGGACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAGAAGCAGCTATTTTCGGTGCCTGATGGATGTGACCTTGTTGCTGCTGGAGCATTGCCTGTTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTGAACTAAAGGCTGGCCAGGTGCTACTTGCTCTGGGTGCTGCTGGTGGTGTCGGAGCATCTGCTGTACAAATAGGAAAAGTTTGTGGTGCTGCTGTTATTGCAGTTGCTAGGGGGAA] consensusID : consensus_14302#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [TTTTTTCTGAAATTTATACTACAATTAATAACTTCACATATTTCTCACATTTTCTCTTCTCATACATCCTGCAGCATGGTACACAGGTCGGTTACATGCAGAAGCCAGACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTGCAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACATGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATTTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCGAAAGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTAGCTTCCCCAGTACAAACC] [-] EMBL BM420946 [TTTTTTCTGAAATTTATACTACAATTAATAACTTCACATATTTCTCACATTTTCTCTTCTCATACATCCTGCAGCATGGTACACAGGTCGGTTACATGCAGAAGCCAGACATTACAGGGGACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTGCAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACATGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATTTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCGAAAGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTAGCTTCCCCAGTACAAACC] [+] EMBL CB639259 [ CTCCACTAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTGCAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACATGTGCATAAATGTATGGTTTTGAATAAAACCCTGATGAACCCTGAAGGGCGTTAAAGTCTTGATTTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCAAAAGCGAAATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGG ] consensusID : consensus_14302#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [TTGACTATCCAAAAGCACCGCCCGCCGCCGTCGCCGCGACGCCGCCTAGAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGCGAGGATTCTCCGTTAATCTACATACCTAAAAAAATTCATGTCTCTGGCAGTTTGCAAGCTAGCCGTACTTGTAAACCACATTATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACCTGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATTTTGCTGGTGAGCCCGGCGCGATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCGAAAGCCAAATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTACCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGC] [+] EMBL CB642039 [TTGACTATCCAAAAGCACCGCCCGCCGCCGTCGCCGCGACGCCGCCTAGAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGCGAGGATTCTCCGTTAATCTACATACCTAAAAAAATTCATGTCTCTGGCAGTTTGCAAGCTAGCCGTACTTGTAAACCACATTATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACCTGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGATTTTGCTGGTGAGCCCGGCGCGATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCGAAAGCCAAATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTACCTTCCCCAGTACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGC] consensusID : consensus_14302#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [GGCGCCGGCGCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCACCTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTCCGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCCGCCCCGGGGACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAGAAGCAGCTGTCTGCAGGAAAAAATTGAATTGTACTTGGCCAATAATCAGGGAACTTACACAATAGAGAAACATCTTATTTATTCTGGTATGTTCTATTGAATCAGTGCTATGTTGTTTCGAATCAGATTTTCGGTGCCTGATGGATGTGACCTTGTTGCTGCTGGAGCATTGCCTGTTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTCAACTAAAGGCTGGCCAGGTGCTACTTGTTCTGGGTGCTGCTGGTGGTGTCGGGGCATCTGCTGTACAAATAGGAAAAGTT] [+] EMBL CB630219 [GGCGCCGGCGCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCACCTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTCCGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCCGCCCCGGGGACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAGAAGCAGCTGTCTGCAGGAAAAAATTGAATTGTACTTGGCCAATAATCAGGGAACTTACACAATAGAGAAACATCTTATTTATTCTGGTATGTTCTATTGAATCAGTGCTATGTTGTTTCGAATCAGATTTTCGGTGCCTGATGGATGTGACCTTGTTGCTGCTGGAGCATTGCCTGTTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTCAACTAAAGGCTGGCCAGGTGCTACTTGTTCTGGGTGCTGCTGGTGGTGTCGGGGCATCTGCTGTACAAATAGGAAAAGT ] [-] EMBL CB630220 [ GGTGCTAC TGTTCTGGGTGCTGCTGGTGGTGTCGGGGCATCTGCTGTACAAATAGGAAAAGTT] consensusID : consensus_14302#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [GCCGCGACGCCGCCTATAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGTTATTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTACAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGATTACCGCTTCTTTAAATAATACCGTCATGGTCTATAAATATGACATGTGCATAAATGTATGGTTTTAAATAAAACCCTGATGAACCCTGAAGGGCGTTAAAGTCTTGATTTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCAAAAGCAAAATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGATTTCATTGAGGGAGTCAATGATTACAGGTGGCCGATGAGTGAAGTATCTTCCCCAATACAAACCATGAATTGTCCAATTCTTAACAAAAGCGATGTTTGCTCGAAT] [+] EMBL CB653218 [GCCGCGACGCCGCCTATAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCTGGCCCCCGGCGGTTATTCAAATTTATTCTCCACTAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTACAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGATTACCGCTTCTTTAAATAATACCGTCATGGTCTATAAATATGACATGTGCATAAATGTATGGTTTTAAATAAAACCCTGATGAACCCTGAAGGGCGTTAAAGTCTTGATTTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCTGCAAAAGCAAAATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAACCCCTTTGAAAGCCATGAAAAGATTTCATTGAGGGAGTCAATGATTACAGGTGGCCGATGAGTGAAGTATCTTCCCCAATACAAACCATGAATTGTCCAATTCTTAACAAAAGCGATGTTTGCTCGAAT] consensusID : consensus_14302#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [TTTTTTTTTTTATTTCTCACATTTTCTCTTCTCATACATCCNTGGAGCATGGGTACACAGGTGTCGGTTACATGGAGAAGCCAGACATTACAGGGGACGGGCCAACCTACAGATAACTCTATTTTATTTTTCAAATNGTATTCTCCACTAATCTACATACATAAAATAATTCAGGTCTCTGGTAGTTTGCCAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGACTACCGCGTGCTTTAAATAATACCGTCAGGGTCTATACCATATGACNTGTGCATAGATGTATGGTTTNGAATAGAACCCTGATGAACCCTGCAGGGCGTTAGAGTCTTGATTTGNTGGTGAGCCCATCACAATCATCACTTTACCAACGGGCTTCCTGGTCTCTCAGGGGTGCGAAAGCGAGATGTGCCTCAGGGGAGCCTGTAAGTGGTGGGGAACTCCGGAATTTTTATCAACCCCTTTGNACAGCCCATGATCAACAGAGTTCACTGGGGGAG] [-] EMBL BM038814 [TTTTTTTTTTTATTTCTCACATTTTCTCTTCTCATACATCCNTGGAGCATGGGTACACAGGTGTCGGTTACATGGAGAAGCCAGACATTACAGGGGACGGGCCAACCTACAGATAACTCTATTTTATTTTTCAAATNGTATTCTCCACTAATCTACATACATAAAATAATTCAGGTCTCTGGTAGTTTGCCAAGCTAGCAGTACTTGTAAACCACATTATTGAAAGGGACTACCGCGTGCTTTAAATAATACCGTCAGGGTCTATACCATATGACNTGTGCATAGATGTATGGTTTNGAATAGAACCCTGATGAACCCTGCAGGGCGTTAGAGTCTTGATTTGNTGGTGAGCCCATCACAATCATCACTTTACCAACGGGCTTCCTGGTCTCTCAGGGGTGCGAAAGCGAGATGTGCCTCAGGGGAGCCTGTAAGTGGTGGGGAACTCCGGAATTTTTATCAACCCCTTTGNACAGCCCATGATCAACAGAGTTCACTGGGGGAG] consensusID : consensus_14302#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [CAGTACAAANCATGAATNNNNNANNNNNTNACAAGANNNATGNNNNNNCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTNNNAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACTTTCCATAATACTTTCCTTGCTTGAGTCAATTACATGGTCAGCTCCTATAGTCTTGAGATACTGCAATTTCTC] [-] EMBL CF195778 [CAGTACAAANCATGAATNNNNNANNNNNTNACAAGANNNATGNNNNNNCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATCAGAATATGTGCACCCCAATTGAGAAGTNNNAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCATATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACTTTCCATAATACTTTCCTTGCTTGAGTCAATTACATGGTCAGCTCCTATAGTCTTGAGATACTGCAATTTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14302#0 TTCTTTTTAGTGATACTACAATTAATAACTTCACATATTTCTCACATTTTCTCTTCTCAT 60 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 ------------------------------------------------------------ consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 ACATCCTGCAGCATTGGTACACAGTGTCGGTTACATTGCAGAAGCCAGACATTACAGGGG 120 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 ------------------------------------------------------------ consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 ACGGCCCAACCTACAGATAACTCTATTTTATTTTTCAAATTTATTCTCCACTAATCTACA 180 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 ------------------------------------------------------------ consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 TACATAAAATAATTCATGTCTCTGGTAGTTTGCAAGCTAGCAGTACTTGTAAACCACATT 240 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 ------------------------------------------------------------ consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 ATTGAAAGGGACTACCGCTGCTTTAAATAATACCGTCATGGTCTATACATATGACATGTG 300 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 ---------------------------------CCAAAAGCACCGCCCGCCGCCGTCGCC 27 consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 CATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCTGAAGGGCGTTAGAGTCTTGAT 360 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 ------------------------------------------------------------ consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ------------------------------------------------------------ consensus_14302#6 ------------------------------------------------------------ consensus_14302#1 GCGACGCCGCCTAGAAAAAATGGACGCGCTCGTGGTGCGGCGGCTCGGGGACCCCACGCT 87 consensus_14302#4 ------------------------------------------------------------ consensus_14302#0 TTTGCTGGTGAGCCCATCACAATCATCACTTTACCAACGGCCTTCCTGTCTCTCAGGGCT 420 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 -----------------------------------------------------TTGACTA 7 consensus_14302#5 ------------------------------------------------------------ consensus_14302#2 ---TTTTTTCTGAAATTTATACTACAATTAATAACTTCACATATTTCTCACATTTTCTCT 57 consensus_14302#6 -------------------------------TTTTTTTTTTTATTTCTCACATTTTCTCT 29 consensus_14302#1 GGCCCCCGGCGGCGAGGCCTCCCCGTTCGCGCCGGTCACCGGGGACCACCCGGCGCCGGC 147 consensus_14302#4 ---------------------------------------------------GGCGCCGGC 9 consensus_14302#0 GCGAAAGCGAGATGTGCCTCAGGGAGCCTGTAAGTGTGGGAAATCTGGATTTTTATCAAC 480 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 TCCAAAAGCACCGCCCGCCGCCGTCGCCGCGACGCCGCCTAGAAAAAATGGACGCGCTCG 67 consensus_14302#5 -------------------------GCCGCGACGCCGCCTATAAAAAATGGACGCGCTCG 35 consensus_14302#2 TCTCATACATCCT-GCAGCATGG-TACACAGGT--CGGTTACATGCAGAAGCCAGACATT 113 consensus_14302#6 TCTCATACATCCNTGGAGCATGGGTACACAGGTGTCGGTTACATGGAGAAGCCAGACATT 89 consensus_14302#1 GCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCAC 207 consensus_14302#4 GCTCGCGTCGCCGACGTCCGTGCGGGTGCGCGTGGCGGCCACCAGCCTCAACTTCGCCAC 69 consensus_14302#0 CCCTTTGAAAGCCATGAA---AAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGA 537 consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 TGGTGCGGCGGCTCGGGG---ACCCCACGCTGGCCCCCGGCGGCGAGG--------ATTC 116 consensus_14302#5 TGGTGCGGCGGCTCGGGG---ACCCCACGCTGGCCCCCGGCGGTTATTCAAATT-TATTC 91 consensus_14302#2 ACAGGGGACGGCCCA------ACCTACAGATAACTCTATTTTATTTTTCAAATT-TATTC 166 consensus_14302#6 ACAGGGGACGGGCCA------ACCTACAGATAACTCTATTTTATTTTTCAAATNGTATTC 143 consensus_14302#1 CTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTC 267 consensus_14302#4 CTACCTGCAGGTACAGGGCAAGTACCAGGAGCGCCCCGCGCTACCGTTCGTCCCGGGCTC 129 consensus_14302#0 TGAGT---GAAGTAGCTTCCCCAGTACAAACCATGAATTGTCCAATTCTT--AACAAGAG 592 consensus_14302#7 ---------------------CAGTACAAANCATGAATNNNNNANNNNNT--NACAAGAN 37 consensus_14302#3 TCCGT---TAATCTACATACCTAAAAAAATTCATGTCTCTGGCAGTTTGC-AAGCTAGCC 172 consensus_14302#5 TCCAC---TAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTAC-AAGCTAGCA 147 consensus_14302#2 TCCAC---TAATCTACATACATAAAATAATTCATGTCTCTGGTAGTTTGC-AAGCTAGCA 222 consensus_14302#6 TCCAC---TAATCTACATACATAAAATAATTCAGGTCTCTGGTAGTTTGCCAAGCTAGCA 200 consensus_14302#1 CGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCC--GCCCCGGG 325 consensus_14302#4 CGACTACGCGGGGTTCGTCGACGCCGTCGGCCCCGCCGTGCGGAGGTTCC--GCCCCGGG 187 * * * * * consensus_14302#0 CGA-TGTTTGCTCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATC-AGAATATG 650 consensus_14302#7 NNA-TGNNNNNNCGAATAATTGGTACATCTCCACTGGCAAATCCAATTATC-AGAATATG 95 consensus_14302#3 GTACTTGTAAACCACATTATTGAAAGGGACTACCGC-TGCTTTAAATAATA-CCGTCATG 230 consensus_14302#5 GTACTTGTAAACCACATTATTGAAAGGGATTACCGC-TTCTTTAAATAATA-CCGTCATG 205 consensus_14302#2 GTACTTGTAAACCACATTATTGAAAGGGACTACCGC-TGCTTTAAATAATA-CCGTCATG 280 consensus_14302#6 GTACTTGTAAACCACATTATTGAAAGGGACTACCGCGTGCTTTAAATAATA-CCGTCAGG 259 consensus_14302#1 GACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAG 385 consensus_14302#4 GACCGCGTCTGCGGCCTCGCCGCCGTCGGCTCCTTCGCGGATCTCATCGTCGCCGACGAG 247 * * * ** * * consensus_14302#0 -TGCACCCCAATTGAGAAGTTTTAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCAT 709 consensus_14302#7 -TGCACCCCAATTGAGAAGTNNNAGGCTATCTTGTGTTAATTTGCCTCCAACAGGATCAT 154 consensus_14302#3 GTCTATAC-ATATGACCTGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCT 289 consensus_14302#5 GTCTATAA-ATATGACATGTGCATAAATGTATGGTTTTAAATAAAACCCTGATGAACCCT 264 consensus_14302#2 GTCTATAC-ATATGACATGTGCATAGATGTATGGTTTTGAATAGAACCCTGATGAACCCT 339 consensus_14302#6 GTCTATACCATATGACNTGTGCATAGATGTATGGTTTNGAATAGAACCCTGATGAACCCT 319 consensus_14302#1 AAGCAGCT---------------------------------------------------- 393 consensus_14302#4 AAGCAGCT--GTCTGCAGGAAAAAATTGAATTGTACTTGGCCAATAATCAGGGAACTTAC 305 * consensus_14302#0 ATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACT------TT 763 consensus_14302#7 ATAAGACATCAACACCTTTGAGGCCTTTGGCTTTTAAAAAAGATTTGGCACT------TT 208 consensus_14302#3 GAAGGGCGTTAGAGTCTT-GATTTTGCTGGTGAGCCCGGCGCGATCATCACT------TT 342 consensus_14302#5 GAAGGGCGTTAAAGTCTT-GATTTTGCTGGTGAGCCCATCACAATCATCACT------TT 317 consensus_14302#2 GAAGGGCGTTAGAGTCTT-GATTTTGCTGGTGAGCCCATCACAATCATCACT------TT 392 consensus_14302#6 GCAGGGCGTTAGAGTCTT-GATTT-GNTGGTGAGCCCATCACAATCATCACT------TT 371 consensus_14302#1 ------------------------------------------------------------ consensus_14302#4 ACAATAGAGAAACATCTT-ATTTATTCTGGTATGTTCTATTGAATCAGTGCTATGTTGTT 364 consensus_14302#0 CCATAATACTTTCCTT---GCTTGAGT---CAATTACATGGTCAGCTCCTATA--GTCTT 815 consensus_14302#7 CCATAATACTTTCCTT---GCTTGAGT---CAATTACATGGTCAGCTCCTATA--GTCTT 260 consensus_14302#3 ACCAACGGCCTTCCTG-TCTCTCAGGGCTGCGAAAGCCAAATGTGCCTCAGGG-AGCCTG 400 consensus_14302#5 ACCAACGGCCTTCCTG-TCTCTCAGGGCTGCAAAAGCAAAATGTGCCTCAGGG-AGCCTG 375 consensus_14302#2 ACCAACGGCCTTCCTG-TCTCTCAGGGCTGCGAAAGCGAGATGTGCCTCAGGG-AGCCTG 450 consensus_14302#6 ACCAACGGGCTTCCTGGTCTCTCAGGGGTGCGAAAGCGAGATGTGCCTCAGGGGAGCCTG 431 consensus_14302#1 ---------ATTTTCGGTGCCTGATGGATGTGACCTTGTTGC-TGCTGGAGCATTGCCTG 443 consensus_14302#4 TCGAATCAGATTTTCGGTGCCTGATGGATGTGACCTTGTTGC-TGCTGGAGCATTGCCTG 423 ** ** * * ** * ** consensus_14302#0 GAGATAC----------------------------------------------------- 822 consensus_14302#7 GAGATACTGCAATTTC----TC-------------------------------------- 278 consensus_14302#3 TAAGTG-TGGGAAATC----T--GGATTTTTATCAACCCCTTTGAA-AGCC----ATGAA 448 consensus_14302#5 TAAGTG-TGGGAAATC----T--GGATTTTTATCAACCCCTTTGAA-AGCC----ATGAA 423 consensus_14302#2 TAAGTG-TGGGAAATC----T--GGATTTTTATCAACCCCTTTGAA-AGCC----ATGAA 498 consensus_14302#6 TAAGTGGTGGGGAACT----CCGGAATTTTTATCAACCCCTTTGNACAGCCCATGATCAA 487 consensus_14302#1 TTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTGAACTAAAGGCTGGCCAGG 503 consensus_14302#4 TTGCATTTGGTACATCGCATTTGGCCCTTGTACACAGAGCTCAACTAAAGGCTGGCCAGG 483 consensus_14302#0 ------------------------------------------------------------ consensus_14302#7 ------------------------------------------------------------ consensus_14302#3 AAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTACCTTCCCCAG 508 consensus_14302#5 AAGATTTCATTGAGGGAGTCAATGATTACAGGTGGCCGATGAGTGAAGTATCTTCCCCAA 483 consensus_14302#2 AAGAGTTCATTGAGGGAGTCAATGAGTACAGGTGGCCGATGAGTGAAGTAGCTTCCCCAG 558 consensus_14302#6 CAGAGTTCACTGGGGGAG------------------------------------------ 505 consensus_14302#1 TGCTACTTGCTCTGGGTGCTGCTGGTGGTGTCGGAGCATCTGCTGTACAAATAGGAAAAG 563 consensus_14302#4 TGCTACTTGTTCTGGGTGCTGCTGGTGGTGTCGGGGCATCTGCTGTACAAATAGGAAAAG 543 consensus_14302#0 -------------------------------------------------- consensus_14302#7 -------------------------------------------------- consensus_14302#3 TACAAACCATGAATTGTCCAATTCTTAACAAGAGCGATGTTTGC------ 552 consensus_14302#5 TACAAACCATGAATTGTCCAATTCTTAACAAAAGCGATGTTTGCTCGAAT 533 consensus_14302#2 TACAAACC------------------------------------------ 566 consensus_14302#6 -------------------------------------------------- consensus_14302#1 TTTGTGGTGCTGCTGTTATTGCAGTTGCTAGGGGGAA------------- 600 consensus_14302#4 TT------------------------------------------------ 545 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||