These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1180 fasta sequence [TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATCAGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGGTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGCGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAACGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCTCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGGTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGGCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCACTCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATATAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGGTAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT] [+] EMBL AK064674 [TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATCAGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGGTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGCGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAACGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCTCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGGTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGGCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCACTCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATATAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGGTAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT] consensusID : consensus_1431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC] [-] EMBL CF323574 [GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1431#0 TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATC 60 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 AGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAAC-CTT 119 consensus_1431#1 ----------------------------GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTT 32 * * ** ** * * * *** consensus_1431#0 CATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACG 179 consensus_1431#1 CATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACG 92 ************************************************************ consensus_1431#0 GCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGG 239 consensus_1431#1 GCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGG 152 ************************************************************ consensus_1431#0 CGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGG 299 consensus_1431#1 CGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGG 212 ************************************************************ consensus_1431#0 CCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCG 359 consensus_1431#1 CCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC----- 267 ******************************************************* consensus_1431#0 GTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCG 419 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 CCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTG 479 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 ATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTG 539 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 GTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGG 599 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 CGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAA 659 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 CGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTC 719 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 TCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGC 779 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 ATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGG 839 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 GTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGAC 899 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 ACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATG 959 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 GCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCAC 1019 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 TCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATA 1079 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 TAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGG 1139 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 TAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT 1180 consensus_1431#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||