These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1309 fasta sequence [GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA-GGG-TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA-TCGGCAAA-TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAAAAAAAAAAAAAAAA] [+] EMBL AK061107 [GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAA ] [+] EMBL CA753572 [ AACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTNTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTGGCTGCCCC AATGGTGCCCCCCAGA GGGAGAC TCCTGCTGCTGGCCCTCCTTCA CTGCCGAACAT TCCCAGA ] [+] EMBL AK099201 [ ACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAGAGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTGGAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAA ] [+] EMBL AU164319 [ CGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGTCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGCGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATNGCCAAAGTGTGGTGGTGCCAATGGTAACTTnaaga ] [+] EMBL CF325246 [ TGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAA GGGTTTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACT ] [+] EMBL CF325222 [ TGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGATGCTGGTACTTATGACAAGAACATTACTGAATGGCCAAAGTGTGGTGGTGCCAATGGTAGCTTGAGATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTGATCCAGCCCATCAAAGACAAGCATGCAGGTGTCACTTATGCAGATCTGTTTCAGCTCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGG TTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTCCTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCCTGAGTGACAAGGA ] [+] EMBL BI797996 [ TAATAGCTACTTCAAGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCC AACTGAGCAATCTCGGAGCAAAGTTTGATCCTCC AAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGACTCGGCAAACTGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATC AAATATATGACATAATTTATTACTGAAAAAAA ] [+] EMBL BE040319 [ AGGACATCAAAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTCTTCTTGCTACTATAGAGCATATTCTGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTAGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAAAAAAAAAAAAAAAA] [+] EMBL AU173022 [ AAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTATTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGACGATACCCTGTTTNTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAATTTAATCCATTGA TCGGCAAA TGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATTANAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTNTTA AAAAAAAAAAAAAAAA] [+] EMBL AU095912 [ CATTTTGGCNCATTACAATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGACATAATTTATTACTGAnnnn ] consensusID : consensus_14320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CCCCCCCCAAACCCTTCCTCTCCCCTCGACTCCGGCGCCGACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACGATAAGAACATCACTGAATGGCCAAAGTGTGGTGGTGCGAATGGTAGCTTGAGATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCAAGAGCAAGTATGCAGGTGTCACTTATGCAGATATATTTCAACTTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTCCTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCCTGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAGAGCGT] [+] EMBL AK073910 [CCCCCCCCAAACCCTTCCTCTCCCCTCGACTCCGGCGCCGACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACGATAAGAACATCACTGAATGGCCAAAGTGTGGTGGTGCGAATGGTAGCTTGAGATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCAAGAGCAAGTATGCAGGTGTCACTTATGCAGATATATTTCAACTTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCATGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTCCTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCCTGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAGAGCGT] [+] EMBL CB685741 [ CCCCCAAAACCTTCCTCTCCCCTGGAGTCCGGCGCCGACATGGCCGTCGCGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCTTCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCGTCGTCATCGGCGGCGGCGGGTGCGGGGGACGTGGAGGATGAGCTGCGCGCCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGGCATGACGCTGGCACTTACCATAAGAACGGCACTGAATGGCCAAAGTGAGGGGGTGCGAATGGTAGCTTGACATTTGGAGCTGAGTTAAAACATGCAGCTAACACAGGTCTTCTGAAGGCGTTATTCTTGGTCATTCCCATCACGAGCAAGCATGCAGGTGTCACTTATGCAAATATATTTCc ] consensusID : consensus_14320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence [CCGCTGAAAATGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT-GAGCAATCTTGGGGCAAAGTTTGATCC-TCCAAAGGGTATTTCAC-TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATACCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCAAAAAATCTATTGTACTATATTATAAAGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCACACCCTCAGTTAGATAATACTAGGTTTTTATATAACGAAAAGGGTAATGTGAATTGTGAGTTCCTAAAAAAAAAAA] [+] EMBL AU030079 [CCGCTGAAAATGGGCCTGGTGCNCCTGGNGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTCCTTCAAGGAAATCAANGAACGCCGAGATGAGGATCTTCTNGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCNGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT GAGCAATCTTGGGGCAAAGTTTGATCC TCCAAAGGGTATTTCAC TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATACCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCAAAAAA ] [-] EMBL CB685742 [ TGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACT GAGCAATCTTGGGGCAAAGTTTGATCC TCCAAAGGGTATTTCAC TTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTGATAAACAAGATAATCCCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTATTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCATCTTATCTATTGTACTATATTATAAAGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCACACCCTCAGTTAGATAATACTAGGTTTTTATATAACGAAAAGGGTAATGTGAATTGTGAGTTCCTAAAAAAAAAAA] [+] EMBL AU030078 [ GGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAATCAAAGAACNCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACTGGAGCAATCTTGGGGCAAAGTTTGATCCGCCCAAAGGGTATTTCACTTTGAATANCTGGCGTCACTTGCCGATG ACTGgca ] consensusID : consensus_14320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGNGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTAGGGTGGATGATGTTGGTACTTATGACAAGACATTANTGATTGGCAAAGTGTNGTGGTGCAATNGTAGTTTAGATTCGAATTGAGTTAAANATCGNTNATGAAGGTTTTGTNATNTTTTAAGTATCCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGTTGCAGTTNAACATTGGAAG] [+] EMBL OSS11611A [ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCGCCGCCGACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCCTCTCTTCAGGAGCTCGGGAGGCGTCCGGNGAGCTCGTCGGCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAGGACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTAGGGTGGATGATGTTGGTACTTATGACAAGACATTANTGATTGGCAAAGTGTNGTGGTGCAATNGTAGTTTAGATTCGAATTGAGTTAAANATCGNTNATGAAGGTTTTGTNATNTTTTAAGTATCCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGTTGCAGTTNAACATTGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14320#1 -------------------CCCCCCCCAAACCCTTCCTCTCCCC-TCGACTCCG-GCGCC 39 consensus_14320#3 -------------------ACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCG-CCGCC 40 consensus_14320#0 GCAGCGAACCACTCCCAAAACGCCACCAAAACCCTCCTCTCCCCACCTCCGCCG-CCGCC 59 consensus_14320#2 -----------------------------------CCGCTGAAAATGGGCCTGGTGCTCC 25 ** ** * * * ** consensus_14320#1 GACATGGCCGTCGTGCACCGCATCCTCCGCCGCGGGCTCTCCGCCGCCTCTCCCCTCCCT 99 consensus_14320#3 GACATGGCCGTCGTCCACCGNCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCC 100 consensus_14320#0 GACATGGCCGTCGTCCACCGCCTCCTCCGCCGCGGCCTCTCCGCCGCCTCTCCCCTCCCC 119 consensus_14320#2 TGGAGGGCAATCTTGGAC-ATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAAGGAAA 84 * *** ** * ** * ** * * * * ** ** * consensus_14320#1 TCTCTCCGCGGCCTCCTCCTCGTCTCCCCTCAGGAGCTCGGCAGGCGTCCGGCGAGCTCG 159 consensus_14320#3 TCTCT------------------------TCAGGAGCTCGGGAGGCGTCCGGNGAGCTCG 136 consensus_14320#0 TCTCT------------------------TCAGGAGCTCGGGAGGCGTCCGGCGAGCTCG 155 consensus_14320#2 TCAAAGAACG-------------CCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCT 131 ** * **** ** * ** * consensus_14320#1 TCGTCGTCGGCGGCGGCGGCTGCGGGGGACGTGGAGGCTGAGCTGCGCGCCGCGCGGGAG 219 consensus_14320#3 TCG---------GCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAG 187 consensus_14320#0 TCG---------GCGGCGGCGGCGGGGGACGCGGCGGCTGAGCTGCGGGGCGCGCGGGAG 206 consensus_14320#2 GTGC--------TCTTTGAGGACTCATCATTCAAGATCCATGCTGAAAAGTATGCTGAGG 183 * * * * * * **** ** * * consensus_14320#1 GACGTCAGGCAGCTGCTCAAGTCCAACCCCTGCCATCCCATCCTGGTTCGGTTAGGGTGG 279 consensus_14320#3 GACGTCAAGCAGTTGNTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGT-AGGGTGG 246 consensus_14320#0 GACGTCAAGCAGCTGCTCAAGTCCACCTCCTGCCATCCCATCCTGGTTCGGTTAGGGTGG 266 consensus_14320#2 ATCAGGATGCATTTTTCGAAGACTA--TGCTGAAGCTCATGCCAAACTGAGCAATCTTGG 241 * * *** * *** * * *** * ** * * * *** consensus_14320#1 CATGACGCTGGCACTTACGATAAGAACATCACT-GAATGGCCAAAGTGTGGTGGTG-CGA 337 consensus_14320#3 -ATGATGTTGGTACTTATGACAAGA-CATTANT-GATTGGC-AAAGTGTNGTGGTG-C-A 300 consensus_14320#0 CATGATGCTGGTACTTATGACAAGAACATTACT-GAATGGCCAAAGTGTGGTGGTG-CCA 324 consensus_14320#2 GGCAAAGTTTGATCCTCCAAAGGGTATTTCACTTGAATAGCTGGCGTCAGCTGCCGATGA 301 * * * * * * * * * * * ** * ** ** ** * * consensus_14320#1 ATGGTAGCTTGA-GATTTGGAGTTGAGTTAGTACATGCAGCTAACAAAGGTCTTCTGAAG 396 consensus_14320#3 ATNGTAGTTT-A-GATTCGAA-TTGAGTTAA---ANATCGNTNATGAAGGTTTTGTNA-- 352 consensus_14320#0 ATGGTAGCTTGA-GATTCGAAATTGAGTTAAAACATGCGGCTAATGCAGGTCTTGTGAAT 383 consensus_14320#2 ACTGCATTTTGGCGAGTGATAAACAAGATAAT--ACCTTGTTTGTTCTTGCTACTATAGA 359 * * * ** ** * * ** ** * * * * * consensus_14320#1 GCGTTATTCTTGGTCA--TTCCCATCAAGAGCAAGTATGCAGGTGTCA--CTTATGCAGA 452 consensus_14320#3 ----TNTTTTAAGTAT--CCAGCATAAAGAAAGATAAGGTTAATNTTAAGTTTTTTAAGT 406 consensus_14320#0 GCTTTGAAGCTGATCC--AGCCCATCAAAGACAAGCATGCAGGTGTCA--CTTATGCAGA 439 consensus_14320#2 GCA-TATTCTGGTTTTACTACCCATCCAGAA-ATTTAACTTATTGTAAATGTGATGCTGG 417 * * *** * * * * * * * * consensus_14320#1 TATATTTCAAC-TTGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCA 511 consensus_14320#3 TGCAGTTNAACATTGGAAG----------------------------------------- 425 consensus_14320#0 TCTGTTTCAGC-TCGCCAGTGCTACAGCCATTGAGGAAGCCGGTGGCCCCAAGATCCCCA 498 consensus_14320#2 TGCTGTGTATT--GAGCTGTGTTACTGCTTGCCAAAAAATCTATTGTACTAT-ATTATAA 474 * * * * consensus_14320#1 TGATCTATGGAAGGGCTGATGTTGCTGATGGTGAAGAATGCCCACCTGAGGGGAGACTTC 571 consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 TGATCTATGGAAGGGTTGATGTTGCTGCCCCTGAACAATGCCCGCCAGAGGGGAGACTTC 558 consensus_14320#2 AGATAGCTCGAAAAAGAGCAACCAAATTTGTTCAGG--TCAACAATTAGATGCATCACAC 532 consensus_14320#1 CTGCTGCTGACCAACCTTCACCTGCTGAACACTTGCGAGAAGTATTCTACAGAATGGGCC 631 consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 CTGCTGCTGGCCCTCCTTCACCTGCGGAACATCTACGAGAAGTATTCTATAGAATGGGCC 618 consensus_14320#2 CCTCAGTTAGATAATACTAGGTTTTTATATA---ACGAAAAGGGTAATGTGAATTGTGAG 589 consensus_14320#1 TGAGTGACAAGGAAATTGTTGCGTTGTCAGGAGCTCATACACTTGGTCGAGCTAGACCAG 691 consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 TGAGTGACAAGGAAATTGTTGCATTGTCAGGAGCTCATACACTTGGACGATCTAGACCAG 678 consensus_14320#2 TTCCTAAAAAAAAAAA-------------------------------------------- 605 consensus_14320#1 AGCGT------------------------------------------------------- 696 consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 AGCGCAGTGGATGGGGCAAACCAGAAACTAAATACACTAAAAACGGACCTGGTGCACCTG 738 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 GAGGGCAATCTTGGACATCACAGTGGCTGAAGTTTGATAATAGCTACTTCAAGGACATCA 798 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 AAGAACGCCGAGATGAGGACCTTCTAGTTCTGCCTACTGATGCTGTGCTCTTTGAGGACT 858 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 CATCATTCAAGATCTATGCTGAAAAGTACGCCGCAGATCAGGATGCATTTTTTGAAGACT 918 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 ATGCTGAAGCTCATGCCAAACTGAGCAATCTCGGAGCAAAGTTTGATCCTCCAAAGGGTA 978 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 TTTCACTGGAATAAGTGGCGTCTGCTGCCGATGAGCTGCATTTTGGCGAATGAACAAGAC 1038 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 GATACCCTGTTTCTTCTTGCTACTATAGAGCATATTATGGTTTTATTACCGATCCAGAAA 1098 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 TTTAATCCATTGATCGGCAAATGTGATGTTGGTGTTTTGTATTGAGTTGTGCTCTCCATT 1158 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 AGAAATAAAAATAGCGGTGGCCATTTTCGTTTCCAGGACCAAACATTTTGGCACATTACA 1218 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------------------------------------ consensus_14320#3 ------------------------------------------------------------ consensus_14320#0 ATACAATGTTTTAGATGATGTCTGCATTGAGCTCTTACACAGGATGATCAAAATATATGA 1278 consensus_14320#2 ------------------------------------------------------------ consensus_14320#1 ------------------------------- consensus_14320#3 ------------------------------- consensus_14320#0 CATAATTTATTACTGAAAAAAAAAAAAAAAA 1309 consensus_14320#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||