These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1731 fasta sequence [GAACCAAAATCCGTAGGTCGTATCGTAGGGAGGGCCTGCGCCGATCCCCATCCGTCCCGCGACTCGAACTCGAGCGAGCAGAGGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGCCGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCT-GGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTA-GGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGGTGGGTTCCATAGAAGGAAGAGTTGGTGTGCATCATATTGATGACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAATCTGAATGGCCTACTTGAATTTGAAATGGTAGCTGTCTGAAAAATACGAT] [+] EMBL AK111670 [GAACCAAAATCCGTAGGTCGTATCGTAGGGAGGGCCTGCGCCGATCCCCATCCGTCCCGCGACTCGAACTCGAGCGAGCAGAGGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGCCGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCT GGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTA GGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGGTGGGTTCCATAGAAGGAAGAGTTGGTGTGCATCATATTGATGACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAATCTGAATGGCCTACTTGAATTTGAAATGGTAGCTGTCTGAAAAATACGAT] [+] EMBL CB677575 [ TCCCCATCCGTCCCGCGACTCGAACTCGAGCGAGCAGAGGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGCCGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCT GGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTA NGTGTCT ] [+] EMBL CA755212 [ GCGAGCAGAGGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGCCGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCANCTGTCAAGGAGATCGCTTGGATTCCTCANATGAATCTTCTTGTCTCT GGAAGCTGGGATAAGACTCTAAGGTATTGGGACAC AGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGGATTATCCCCTTA ] [+] EMBL CF323392 [ TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCT GGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGGTGTCTTGCTGCA ] [+] EMBL CF322711 [ TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCT GGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTAC ] [+] EMBL AU108860 [ TCCCATCCATCCCGCGAGCNAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCANCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCTGGGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTT ] [-] EMBL OS38033 [ tCAATCGCCACTCAAATACCAGACTA GGTGTCTTGCTGCA TCCCGGATCAACAAGGA TTTTGGTGGGTCCCATAGAAGGAAGAGTTGGTGTGCATCATATTGATGACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTGAAGMCACTCAATTGGCNNCCAGTTCATCACACGTTTGCAA ] [-] EMBL CF328547 [ CATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAATCT ] consensusID : consensus_14333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 825 fasta sequence [GACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT-GGT-AGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTTTGGCCAAAAAAAAAGA] [-] EMBL CB677576 [GACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT GGT AGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTTTGGCCAAAAAAAAAGA] [+] EMBL CF328546 [ GGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT GGT AGATGTAAATGTCAGTCTACTCGTAGTCACTGAA ATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGC ] [+] EMBL CA998484 [ CCACAGGAATCTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT GGT ACATGTAAATGTCAGCCTACTCGTACTCACTGACGATAGGGGGCTTAG ] [+] EMBL C97094 [ AGCANCTGGGTAAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGCCGCAGGTTTTAGCATGCATCAGTTTGCNGTGNCTAGTTCTANTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTNAGATGTACTAAATTTACCCGTNAGAAACCAGTGGATGCTNACTTTtnnaa ] consensusID : consensus_14333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 817 fasta sequence [TCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATTTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTTTCCAGGACCTCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGCCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATAATCAGATCAGCCCGAACCGTTTTTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGATGGAATTATCGCCACGTTCTGAGAAAAAAAAAAATTAAAAAGGAGAAACCCGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAAAAAAAAAAA] [-] EMBL CB622212 [TCACAGCAAAGCAAAAATTTCACGTTCAAATGTCACAGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACGTTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGACTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATTTGAGGTTAAAGGGAAGCCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCACAAGAAATCATGTACATTGGAAGACAAAAACGTTTTTCCAGGACCTCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGCCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATAATCAGATCAGCCCGAACCGTTTTTAAGGGAGGTGTTGCAAGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGATGGAATTATCGCCACGTTCTGAGAAAAAAAAAAATTAAAAAG ] [+] EMBL BM038641 [ GTGATTACATCCAGCTACGC AAACC AAGAGTGCACAAGAAATCATGTACATTGGAAGACCAAAACGTTTCTCCAGGACCTCTCTGTCCATCGTGTAGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCTGGTAGATGTAAATGTCAGCCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTTTTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGCGAGTCTTATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGC AGTGATGTAAATTATTGC AATGTAGATTCATATTTCGTTAGAATTATCGCCACGTTCTGAGATGTACTAAATTTACCCGTGAGAAACCCGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAAAAAAAAAAA] consensusID : consensus_14333#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGGAAATCGTCCTGCCGCCTGAGCCGATCCCATCCATGCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGGGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCTGGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAA] [+] EMBL CB620891 [CCGGAAATCGTCCTGCCGCCTGAGCCGATCCCATCCATGCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGGGGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCCTCAAATGAATCTTCTTGTCTCTGGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAA] consensusID : consensus_14333#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [GGAGTGCAGGCCACGGAGAGCCCGTTTGCTAAAGGGGAGGTGGTTGGCAAGTGGATGTGAAATTGATGTGGCAAAAGGTGAGGATTGCATGATGTTCGTGTAGAATGTGATGCGCCACGTTCTGGAGGATGTACTAAATTTACCCGTGAGAAACCNGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAATC] [+] EMBL BM420436 [GGAGTGCAGGCCACGGAGAGCCCGTTTGCTAAAGGGGAGGTGGTTGGCAAGTGGATGTGAAATTGATGTGGCAAAAGGTGAGGATTGCATGATGTTCGTGTAGAATGTGATGCGCCACGTTCTGGAGGATGTACTAAATTTACCCGTGAGAAACCNGTGGATGCTGACTTTCTGGTTTTGGCCCGTGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GAACCAAAATCCGTAGGTCGTATCGTAGGGAGGGCCTGCGCCGATCCCCATCCGTCCCGC 60 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GACTCGAACTCGAGCGAGCAGAGGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGC 120 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 CGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC 180 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 TGGATCAGGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAG 240 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 TCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAG 300 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGGTGCGGTGCTGGGAGATTGTTGGT 360 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GGGAGTAGTCAACCAAAGGCATCTATATCGCATGACCAGCCAGTCCTCTGTTCAGCTTGG 420 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AAGGATGATGGAACTACTGTGTTCTCTGGAGGCTGTGATAAACAAGTAAAAATGTGGCCT 480 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 CTGTTGTCTGGTGGGCAGGCTCAGACTGTTGCAATGCATGACGCACCTGTCAAGGAGATC 540 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GCTTGGATTCCTCAAATGAATCTTCTTGTCTCTGGAAGCTGGGATAAGACTCTAAGGTAT 600 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 TGGGACACAAGGCAATCAAATCCTGTCCATGTTCAGCAACTTCCTGAGCGCTGTTACGCA 660 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 CTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTC 720 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AACTTGCAGAATCCTCAGACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACT 780 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ------------------------------------------------------------ consensus_14333#2 ------------------------------------------------------------ consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AGGTGTCTTGCTGCATTCCCGGATCAACAAGGATTTTTGGTGGGTTCCATAGAAGGAAGA 840 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 ---------------------GACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCAC 39 consensus_14333#2 ------------------------TCACAGCAAAGCAAAAATTTCACGTTCAAATGTCAC 36 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GTTGGTGTGCATCATATTGATGACTCACAGCAAAGCAAAAATTTCACGTTCAAATGTCAC 900 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 AGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACG 99 consensus_14333#2 AGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACG 96 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AGGGAAGGGAATGATATTTTCTCTGTCAATTCACTCAATTTTCACCCAGTTCATCACACG 960 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 TTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGA 159 consensus_14333#2 TTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGA 156 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 TTTGCAACTGCTGGATCAGATGGCGCATTTAATTTCTGGGATAAGGATAGCAAACAAAGA 1020 consensus_14333#3 ------------------------------------------------------------ consensus_14333#1 CTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGG 219 consensus_14333#2 CTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGG 216 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 CTGAAGGCTTTTAGTCGGTGCCCTCTTCCTATTCCTTGCAGTACCTTCAACAGTGATGGG 1080 consensus_14333#3 --------------CCGGAAATCGTCCTGCCGCCTGAGCCGATCCCATCCATGCCGCGAG 46 consensus_14333#1 TCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCT 279 consensus_14333#2 TCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCT 276 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 TCGATATTTGCTTATGCAGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCT 1140 consensus_14333#3 CGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGTAGAAGGAGATGGCGACTCTTGGTCTT 106 consensus_14333#1 GCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAG 339 consensus_14333#2 GCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATTTGAGGTTAAAGGGAAG 336 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAGGAATCTGAGGTTAAAGGGAAG 1200 consensus_14333#3 GCCCCAAACATGAATCCAAACAAGTCATTTGAGGTACTGCCTAATCCAGGTGACTCCGTA 166 consensus_14333#1 CCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCAC 399 consensus_14333#2 CCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCAC 396 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 CCGAGAATCGCAACAAGTAGAAAGTGATTACATCCAGCTACGCAAAACCAAAGAGTGCAC 1260 consensus_14333#3 TCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG 226 consensus_14333#1 AAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCT--GTCCATCGTGT 457 consensus_14333#2 AAGAAATCATGTACATTGGAAGACAAAAACGTTTTTCCAGGACCTCTCTGTCCATCGTGT 456 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AAGAAATCATGTACATTGGAAGACAAAAACGTTTCTCCAGGACCTCT--GTCCATCGTGT 1318 consensus_14333#3 GTGCGGTGCTGGGAGATTGTTGGGGGGAGTAGTCAACCAAAGGCATC---TATATCGCAT 283 consensus_14333#1 AGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT 517 consensus_14333#2 AGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT 516 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 AGGATGCTTTTCTCTTGGTTGGTCATCAATTTTGTTGTGTCCAGTCTGGTGTTAGCATCT 1378 consensus_14333#3 GACCAGCCAGTCCTCTGTTCAGCTTGGAAGGATGATGGAACTACTGTGTTCTCTGGA--- 340 consensus_14333#1 GGTAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTT 577 consensus_14333#2 GGTAGATGTAAATGTCAGCCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTT 576 consensus_14333#4 ------------------------------------------------------------ consensus_14333#0 GGTAGATGTAAATGTCAGTCTACTCGTAGTCACTGAAGATAGGGGGTTTAGTCGCAGGTT 1438 consensus_14333#3 GGCTGTGATAAACA--AGTAAAAATGTGGCCTCTGTTGTCTGGTGGGCAGGCTCAGACTG 398 consensus_14333#1 TTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGC 637 consensus_14333#2 TTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGC 636 consensus_14333#4 -----------------------------------------------------GGAGTGC 7 consensus_14333#0 TTAGCATGCATCAGTTTGCAGTGTCTAGTTCTATTTAAGTTATGTTTACCAAGTTTATGC 1498 consensus_14333#3 TTGCAATGCATGACGCACCTGTCAAGGAGATCGCTTGGATTCC-TCAAATGAATCTTCTT 457 consensus_14333#1 GAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCA 697 consensus_14333#2 GAGTCTTA-----------TAATCAGATCAGCCCGAACCGTTTTTAAGGGAGGTGTTGCA 685 consensus_14333#4 AGGCCACGGA-----GAGCCCGTTTGCTAAAGGGGAGGTGGTTGGCAAGTGGATGT-GAA 61 consensus_14333#0 GAGTCTTATGTTGTCGATATAATCAGATCAGCCCGAACCGTTTCTAAGGGAGGTGTTGCA 1558 consensus_14333#3 GTCTCTGGAAGCTGGGATAAGACTCTAAGGTATTGGGACACAAGGCAATCAAATCCTGTC 517 * * * * * consensus_14333#1 AGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATT--AT-CGCCACGTT 754 consensus_14333#2 AGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGATGGAATT--AT-CGCCACGTT 742 consensus_14333#4 ATTGATGTGGCAAAAGGTGAGGATTGCATGATGTTCGTGTAGAATGTGATGCGCCACGTT 121 consensus_14333#0 AGTGATGTAAATTATTGCAAATGTAGATTCATATTTCGTTAGAATT--AT-CGCCACGTT 1615 consensus_14333#3 CATGTTCAGCAACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATT 577 ** * * * * **** * ** consensus_14333#1 CTGA-----GATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTT 809 consensus_14333#2 CTGA-----GAAAAAAAAAAATTAAAAAGGAGAAACCCGTGGATGCTGACTTTCTGGTTT 797 consensus_14333#4 CTGGAG---GATGTACTAAATTTACCCGTGAGAAACCNGTGGATGCTGACTTTCTGGTTT 178 consensus_14333#0 CTGA-----GATGTACTAAATTTACCCGTGAGAAACCAGTGGATGCTGACTTTCTGGTTT 1670 consensus_14333#3 GTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGACGGAGTTC 637 ** * ** * *** * ** * *** consensus_14333#1 TGGCC----AAAAAAAAAGA---------------------------------------- 825 consensus_14333#2 TGGCCCGTGAAAAAAAAAAA---------------------------------------- 817 consensus_14333#4 TGGCCCGTGAATC----------------------------------------------- 191 consensus_14333#0 TGGCCCGTGAATCTGAATGGCCTACTTGAATTTGAAATGGTAGCTGTCTGAAAAATACGA 1730 consensus_14333#3 AAGCGCATCCAATCGCCACTCAA------------------------------------- 660 ** * consensus_14333#1 - consensus_14333#2 - consensus_14333#4 - consensus_14333#0 T 1731 consensus_14333#3 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||