These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1350 fasta sequence [TTCTCGCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGTGACTACTTGGCCCATGAATTTATGCCATGCATGAATATGATATTATTTCAGATGTATTTTTTTAAATTTTTAATCAGTCAATATAGGCTCATTCATTCAATGTAGAAATGAAAAACTGCAAGTATGATCCTGCACATCTGCACAACTGGTAGTGTAATTCTTTCATTTCAGTGCTAGTATGAGTTGCTCACTGGATTCTTCCTATCTTAGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG-TTGAGTTATTTGTTCGTTGTACCGA-CAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCAGCGTTTGGTTCAAAA] [+] EMBL AK066687 [TTCTCGCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGTGACTACTTGGCCCATGAATTTATGCCATGCATGAATATGATATTATTTCAGATGTATTTTTTTAAATTTTTAATCAGTCAATATAGGCTCATTCATTCAATGTAGAAATGAAAAACTGCAAGTATGATCCTGCACATCTGCACAACTGGTAGTGTAATTCTTTCATTTCAGTGCTAGTATGAGTTGCTCACTGGATTCTTCCTATCTTAGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG TTGAGTTATTTGTTCGTTGTACCGA CAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCAGC ] [+] EMBL BM421691 [ CAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTTGAGTTATTTGTTCGTTGTACCGACCAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCAGCGTTTGGTTCAAAA] consensusID : consensus_14339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1174 fasta sequence [GCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC-TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG-TTGAGTTA-TTTGTTCGTTGTA-CCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCA-GCGTTTGGTTGCAAAAAAAAAAAAAAAAAAAGG] [+] EMBL CB641679 [GCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTANACTCAGCATGCTCGCGGAGC ] [+] EMBL CB656619 [ CTCTCCCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTTATGC ] [+] EMBL CB656558 [ CTCTCCCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACTATGGCTTTTTCTAAACT ] [+] EMBL CB657302 [ TCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAAGGTTTCTCTTGAA ] [+] EMBL CB684025 [ CGCTGCGGAGCTCGCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCGGCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTANAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCA ] [+] EMBL AU069726 [ CGGGAGCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGCCGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGGTTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGNTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGC ] [-] EMBL CB684026 [ GTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTTTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG TTGAGTTA TTTGTTCGTTGTA CCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGGTAATCAGAAAATCA GCGTTTGGTTGCAAAA ] [-] EMBL CB657303 [ GTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTTTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTTTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG TTGAGTTA TTTGTTCGTTGTA CCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCA GCGTTTGGTTGCAATAAAAAAAAAAAAAAAAGG] [-] EMBL CB656559 [ ATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGATGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG TTGAGTTA TTTGTTCGTTGTA CCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAGTGGAGCTAATCAGAAAATCACGCGTTT ] [-] EMBL CB656620 [ TCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCATGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATGTGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTG TTGAGTTA TTTGTTCGTTGTA CCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAGTGGAGCTAATCAGAAAATCA GCGTTTGGTTGCA ] [+] EMBL AU175176 [ AGATCAACCATCTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAG AAAGGGGCGATGC TTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTTGAGTTATTTTGTTCGTTGTACCCGAC ] consensusID : consensus_14339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CGAGACAAGGGGCGATGCTTATGCAAATGCTGATGTGTGGGTTTCTCTTGAAGGTATAACTTCACAAGTCTTTCGCAAATCCGCGCTTTCCCATTTAGAGAATATGTGCTAGGTTATGTGCGACACATTACTTTTAAGTAATGCTTGATAACTCCATTTTTCCCTGCATAGAATAACATATATGTTTTCGGAACTTGCAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGGTATGCATGATAAGCTATTCTGAACCCACAATCAGGAGCAATATGAATCTTATTTTTTTTCTAACGTACTGAAACAATTTCCCTAACAACATTCTTGGCATTTTACAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCAGCGTTT] [+] EMBL CA766209 [CGAGACAAGGGGCGATGCTTATGCAAATGCTGATGTGTGGGTTTCTCTTGAAGGTATAACTTCACAAGTCTTTCGCAAATCCGCGCTTTCCCATTTAGAGAATATGTGCTAGGTTATGTGCGACACATTACTTTTAAGTAATGCTTGATAACTCCATTTTTCCCTGCATAGAATAACATATATGTTTTCGGAACTTGCAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGGTATGCATGATAAGCTATTCTGAACCCACAATCAGGAGCAATATGAATCTTATTTTTTTTCTAACGTACTGAAACAATTTCCCTAACAACATTCTTGGCATTTTACAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGATGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAGCTAATCAGAAAATCAGCGTTT] consensusID : consensus_14339#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [NTAAACAGGGTCATGATGATGTATNGAAGCTAACNCCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCANAGGATACAGACCTTGTAGAATTTTGATNTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGATGATGAAAANAACCGGAAGTGTATTTTCCTTGTAAACTGTAAANAAAAGGAATAATGGAGCTTATCCAAAAAAAAAAAAAAAAAA] [+] EMBL AU176556 [NTAAACAGGGTCATGATGATGTATNGAAGCTAACNCCAACTGACATTGCTATTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTGGTGACTCCCAGGCTGACTCACGTGCTCANAGGATACAGACCTTGTAGAATTTTGATNTTTTTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGATGATGAAAANAACCGGAAGTGTATTTTCCTTGTAAACTGTAAANAAAAGGAATAATGGAGCTTATCCAAAAAAAAAAAAAAAAAA] consensusID : consensus_14339#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TAGCGTGGTCGCGGCCGNTGTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGCATACCGTTGACAATCCGGTTGGTGACCCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGAT] [+] EMBL BU572315 [TAGCGTGGTCGCGGCCGNTGTGGTGATCCATACACAATGGCTTTTTCTAAACTCAGCATGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGTCGCATACCGTTGACAATCCGGTTGGTGACCCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14339#1 -----GCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTC 55 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 TTCTCGCCTCTCTCTCTCTCTCTCCTCTTCAATTCTCTCTCTACCTCCGCTGCGGAGCTC 60 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 GCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCG 115 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 GCCGCGTAGCAATGGAGGCGGGCGTGGGGCTGGCGCTGCAGTCGCGGGCGGCGGGGTTCG 120 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 GCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGA 175 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 GCGGCTCCGACCGCCGCCGGAGCGCGCTCTACGGCGGCGAGGGGCGGGCGCGGATCGGGA 180 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 GCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGC 235 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 GCTTGAGGGTCGCTGAGCCGGCGGTGGCGAAGGCCGCTGTGTGGGCTCGCGGGTCCAAGC 240 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 CGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGG 295 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 CGGTCGCCCCGCTCCGTGCCAAGAAATCGTCCGGAGGTCATGAAACATTGCATAACTCGG 300 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 TTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGAC 355 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 TTGATGAAGCCCTCTTGCTAAAGAGAAAATCAGAAGAAGTTCTCTTCTATTTGAATGGAC 360 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 GGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGT 415 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 GGTGTATTTACCTAGTTGGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGT 420 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 CTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCA 475 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 CTGAAGTTTTGGGTTATTCGTTCTTTGATAGTGATAAATTGGTCGAACAAGCTGTGGGCA 480 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 TGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGA 535 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 TGCCTTCAGTCGCTCAAATTTTCAAGGTTCATAGTGAAGCCTTCTTTAGGGATAATGAGA 540 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 GTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTG 595 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 GTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTG 600 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 CTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTATCTGTTTGGTTGGATG 655 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 CTGTTATCCGACCAGTTAACTGGAAATACATGAAGAAGGGCCTTGGACGCTCTTGCTAGG 660 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 ------------------------------------------------------------ consensus_14339#1 TGCCCTTGGACGCTCTTGCTAGGCGTATTGCTAAAGTGGGGACTGCCTCCCGTCC----- 710 consensus_14339#4 --------------------------------------------------TAGCG----- 5 consensus_14339#0 CGTATTGCTAAAGTGGGGACTGCCTCCCGTCCTCTTCTAGATCAACCATCTGGTGATCCA 720 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 -------------------------------------CGAGACAAGGGGCGATGCTTATG 23 consensus_14339#1 -------TCTT-----CTAGATC---AACCATCTG------------------------- 730 consensus_14339#4 -------TGGT-----CGCGGCC---GN---TGTG------------------------- 22 consensus_14339#0 TACACAATGGTGACTACTTGGCCCATGAATTTATGCCATGCATGAATATGATATTATTTC 780 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 CAAATGCTGATGTGTGGGTTTCTCTTGAAGGTATAAC-TTCACAAGTCTTTCGCAAATCC 82 consensus_14339#1 ------------------------------------------------------------ consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 AGATGTATTTTTTTAAATTTTTAATCAGTCAATATAGGCTCATTCATTCAATGTAGAAAT 840 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 GCGCTTTCCCATTTAGAGAATATGTGCTAGGTTATGTGCGACACATTACTTTTAAGTAAT 142 consensus_14339#1 --------------GTGATCCA-------TACACAAT----------------------- 746 consensus_14339#4 --------------GTGATCCA-------TACACAAT----------------------- 38 consensus_14339#0 GAAAAACTGCAAGTATGATCCTGCACATCTGCACAACTGGTAGTGTAATTCTTTCATTTC 900 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 GCTTGATAACTCCATTTTTCCC-------TGCATAGAATAACATATATGTTTTCGGAACT 195 consensus_14339#1 ----------------------------------------GGCTTTTTCTAAACTCAGCA 766 consensus_14339#4 ----------------------------------------GGCTTTTTCTAAACTCAGCA 58 consensus_14339#0 AGTGCTAGTATGAGTTGCTCACTGGATTCTTCCTATCTTAGGCTTTTTCTAAACTCAGCA 960 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 TGCAGAGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACAT 255 consensus_14339#1 TGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAG 826 consensus_14339#4 TGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTG---------------- 102 consensus_14339#0 TGCTCGCGGAGCAAAGGGGCGATGCTTATGCAAATGCTGATGTGAGGGTTTCTCTTGAAG 1020 consensus_14339#3 ------------------------------------------------------------ consensus_14339#2 TGCTATTGAGGTATGCATGATAAGCTATTCTGAACCCACAATCAGGAGC------AATAT 309 consensus_14339#1 AGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTA 886 consensus_14339#4 ----------------GGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTA 146 consensus_14339#0 AGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTA 1080 consensus_14339#3 ---------NTAAACAGGGTCATGATGATGTATNGAAGCTAACNCCAACTGACATTGCTA 51 consensus_14339#2 GAATCTTATTTTTTTTCTAACGTACTGAAACAATTTCCCTAACAACA-TTCTTGGCATTT 368 * * *** * ***** ** * * consensus_14339#1 TTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTG 946 consensus_14339#4 TTGAGTCG------------------------------CATACCGTTGACAATCCGGTTG 176 consensus_14339#0 TTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTG 1140 consensus_14339#3 TTGAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTG 111 consensus_14339#2 TACAGTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCGGTTG 428 * ***** ********************** consensus_14339#1 GTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTT 1006 consensus_14339#4 GTGACCCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGAT---- 232 consensus_14339#0 GTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTT 1200 consensus_14339#3 GTGACTCCCAGGCTGACTCACGTGCTCANAGGATACAGACCTTGTAGAATTTTGATNTTT 171 consensus_14339#2 GTGACTCCCAGGCTGACTCACGTGCTCAGAGGATACAGACCTTGTAGAATTTTGATCTTT 488 ***** ********************** *************************** consensus_14339#1 TTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGA 1066 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 TTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGA 1260 consensus_14339#3 TTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGA 231 consensus_14339#2 TTTGTACCTTAGTGTTACCTTGTAGCGCTGTTGAGTTATTTGTTCGTTGTACCGACAAGA 548 consensus_14339#1 TGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAG 1126 consensus_14339#4 ------------------------------------------------------------ consensus_14339#0 TGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAG 1320 consensus_14339#3 TGATGAAAANAACCGGAAGTGTATTTTCCTTGTAAACTGTAAANAAAAGGAATAATGGAG 291 consensus_14339#2 TGATGAAAAGAACCGGAAGTGTATTTTCCTTGTAAACTGTAAAGAAAAGGAATAATGGAG 608 consensus_14339#1 CTAATCAGAAAATCAGCGTTTGGTTGCAAAAAAAAAAAAAAAAAAAGG 1174 consensus_14339#4 ------------------------------------------------ consensus_14339#0 CTAATCAGAAAATCAGCGTTTGGTTCAAAA------------------ 1350 consensus_14339#3 CTTATCCAAAAAAAAAAAAAAAAAA----------------------- 316 consensus_14339#2 CTAATCAGAAAATCAGCGTTT--------------------------- 629 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||