cluster # 14347

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Oryza sativa
cluster # 14347 cluster # 14347 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14347#0 length = 1469 sequences # 8
consensus_14347#1 length = 976 sequences # 5

consensus_14347#2 length = 454 sequences # 2
consensus_14347#3 length = 270 sequences # 1

consensusID : consensus_14347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1469
fasta sequence

                              [TGTTGCATAAGCCCTCTCCCTGCTTCCGCCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCC-GCTC-ATCGCCGACCCGCCTGACA-TCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTG-TTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTG-ATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCTCGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGTGACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAGAGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCAAGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAGTAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAAGGATCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTCGCACTGGCACTGGAAGGCAT]

[+] EMBL OSS2478A             [TGTTGCATAAGCCCTCTCCCTGCTTCCGCCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCANGNANGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGANGCCGCCTCCTGCATCTACACCACCGCCTTGCC GCTC ATCGCCGACCCGCCTGANA TCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSC109011            [          GCCCTCTCCCTGCTTCCGCCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGNCTCCTGCATCTACACCACCGCCTTGCCGGCTCAATCGCCGACCCGGCTGACATTCCTCGGAAACATGGNANAACCATCNTTT NATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTTCAAAGGTTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK121601             [                             CTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCC GCTC ATCGCCGACCCGCCTGACA TCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTG TTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTG ATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCTCGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGTGACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAGAGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCAAGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAGTAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAAGGATCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTCGCACTGGCACTGGAAGGCAT]
[+] EMBL CB671814             [                                            ATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCC GCTC ATCGCCGACCCGCCTGACA TCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTG TTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCTCGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF309058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCTCGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGTGACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAGAGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCAAGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAGTAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGT         GGAGGAGGAGGAGGAGGAGAGGAAAGGATCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAAAAAa                                                                                                                                    ]
[-] EMBL CB671815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCTCGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGTGACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAGAGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCAAGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAGTAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C71837               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCAAGCCAAGGAAGTAGTAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAAGGNTCCAAGGTGCAAGGCCCAGCCTTTNTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTANTTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTC                                                                                                                                                                   ]
[+] EMBL AU092128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAGAGGAAAGGATCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTNGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTNATAATGCTAaaaaa                                                                                                                           ]




>consensus_14347#0
TGTTGCATAAGCCCTCTCCCTGCTTCCGCCTTGTTCAATAATCAATATACTCTTCTCCTC
GATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGAC
CTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCAT
CTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACA
ACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGA
ACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGAT
GTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCA
GAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTC
CGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGA
AGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGT
TCCTGATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGG
ATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCG
TTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCT
CGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGT
GACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAG
AGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCA
AGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAG
TAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCAGTGAAGGAAGG
AACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGAG
GAAAGGATCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTG
GAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATC
GTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAA
TAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCAT
CCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCT
TCAGGCTTCGCACTGGCACTGGAAGGCAT

consensusID : consensus_14347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 976
fasta sequence

                              [CCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGGTTTGATCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTATATAGGTAAGGTAGTGATAGATAAGGAATCGTTGTGAGCAAGCAACGGCTGTGTATTGTAAAGTGTGTTTCCGAAACACAGGTGTCGAGAAAAGAAATCACCTTTGCCCTTGTATGTATATGTGCGTGGTGCTTCTTTACTCAAATTAAAGGCCATCAAAGCTATGACACTGATTTTACTATTTCTGCCCAAAAAAA]

[+] EMBL AK059614             [CCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGGTTTGATCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTATATAGGTAAGGTAGTGATAGATAAGGAATCGTTGTGAGCAAGCAACGGCTGTGTATTGTAAAGTGTGTTTCCGAAACACAGGTGTCGAGAAAAGAAATCACCT                                                                                              ]
[+] EMBL CF278139             [ CTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF309059             [            ATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCTCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGATGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF296991             [                       CTTCTCCTCGATCTCTTCTCTTGTCC TCTCC ATAATTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAGCTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGT                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF278138             [                                                                                                                                                                                                                                                                                                                                                             TAATGGATGAAACCATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGGTTTGATCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTATATAGGTAAGGTAGTGATAGATAAGGAATCGTTGTGAGCAAGCAACGGCTGTGTATTGTAAAGTGTGTTTCCGAAACACAGGTGTCGAGAAAAGAAATCACCTTTGCCCTTGTATGTATATGTGCGTGGTGCTTCTTTACTCAAATTAAAGGCCATCAAAGCTATGACACTGATTTTACTATTTCTGCCCAAAAAAA]




>consensus_14347#1
CCTTGTTCAATAATCAATATACTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAA
TTCTCCATGTACGCCGCCATGTACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAG
CAGCAGCCGCCGCCCGACGCCGCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCC
GACCCGCCTGACATCCTCGGAAACATGGCACAACCATCCTTTCTATCAGAGTATGACCTT
GGAGGGGAAGGGGACCTGTTCAAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGC
CTTGATCCAGTTGCAGCAGCCATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAA
ACTATAGAGGTTGCAGATATCAGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTA
TACGAGTGCGAGAAGGAACTCATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTG
CTGGACGTCAAGATTCCTATGCTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAA
CTACCGGCCATGGAGAAGGAGAAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGT
GTCAGTTCTGGGTGCCTCAACTCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTC
CTGGACTTCCAAGGATTGGACTTTGAGACAGCGTTTGGGTTGAGGAGGGCATACAGCGAA
GGAGACATTCAGGTTTGATCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTAT
ATAGGTAAGGTAGTGATAGATAAGGAATCGTTGTGAGCAAGCAACGGCTGTGTATTGTAA
AGTGTGTTTCCGAAACACAGGTGTCGAGAAAAGAAATCACCTTTGCCCTTGTATGTATAT
GTGCGTGGTGCTTCTTTACTCAAATTAAAGGCCATCAAAGCTATGACACTGATTTTACTA
TTTCTGCCCAAAAAAA

consensusID : consensus_14347#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 454
fasta sequence

                              [GAANCAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGNTCGTNCTCGGAGGAGGAGGAGAGGAAAGGATCCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU098315             [GAANCAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCCAGTGAAGGAAGGAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGNTCGTNCTCGGAGGAGGAGGAGAGGAAAGGATCCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF296992             [                                                                                                                      GAT CCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCCTTCTACTACTAGACAAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTAAA                             ]




>consensus_14347#2
GAANCAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCCAGTGAAGGAAGGAACCTTGG
CTTCTAGAAGCTTCTAGCTGGTGGAGGAGNTCGTNCTCGGAGGAGGAGGAGAGGAAAGGA
TCCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAGGTGGAAGAG
AGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGGATCGTCTCC
TTCTACTACTAGACTAGTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAA
TTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGT
ACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGC
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14347#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [AAATTTCCTCTTCAAACGCAAAACGCTTTAGCTAGCTTCCTAAACAGAGCAACTAAAAATTCACTCACTCACCTTTGAGATTTCTTTTCTTCTTCCACCACTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTAAAA]

[+] EMBL AU086038             [AAATTTCCTCTTCAAACGCAAAACGCTTTAGCTAGCTTCCTAAACAGAGCAACTAAAAATTCACTCACTCACCTTTGAGATTTCTTTTCTTCTTCCACCACTACTTGTAATTCTATTTTCCTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGTAATAAACTTCAGCTCCCTTCAGGCTTAAAA]




>consensus_14347#3
AAATTTCCTCTTCAAACGCAAAACGCTTTAGCTAGCTTCCTAAACAGAGCAACTAAAAAT
TCACTCACTCACCTTTGAGATTTCTTTTCTTCTTCCACCACTACTTGTAATTCTATTTTC
CTTCCAATGCATGTGTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGC
GAGCTGAAGGCCGCCCATCCATGTACAAATGGCTCGATGAAGAAACTTATCACTAGTAGT
AATAAACTTCAGCTCCCTTCAGGCTTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      TGTTGCATAAGCCCTCTCCCTGCTTCCGCCTTGTTCAATAATCAATATACTCTTCTCCTC 60
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      GATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATGTACCCGGAGAC 120
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      CTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCCGCCTCCTGCAT 180
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      CTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGAAACATGGCACA 240
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      ACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTCAAAGCTCCTGA 300
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      ACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCCATTTCGATGAT 360
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      GTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATCAGCGACATTCA 420
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      GAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTCATGGAGAAGTC 480
consensus_14347#1      ------------------------------------------------------------
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      CGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATGCTGCAAGTGGA 540
consensus_14347#1      ---------------------------------------CCTTGTTCAATAATCAATATA 21
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      AGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAGAAGCCATCAGT 600
consensus_14347#1      CTCTTCTCCTCGATCTCTTCTCTTGTCCATCTCCAATAATTCTCCATGTACGCCGCCATG 81
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      TCCTGATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAACTCAGCTGATTGG 660
consensus_14347#1      TACCCGGAGACCTTCGGCTTCTCTGCTTACCCCCAGCAGCAGCAGCCGCCGCCCGACGCC 141
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      ATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGACTTTGAGACAGCG 720
consensus_14347#1      GCCTCCTGCATCTACACCACCGCCTTGCCGCTCATCGCCGACCCGCCTGACATCCTCGGA 201
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      TTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGAATCTTGGAGCTAGCACCCCT 780
consensus_14347#1      AACATGGCACAACCATCCTTTCTATCAGAGTATGACCTTGGAGGGGAAGGGGACCTGTTC 261
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      CGACCCGGGAACTCAGGAAACGCTCAATTAGCATCTTGCGAGAGGCTTGTAACCATCAGT 840
consensus_14347#1      AAAGCTCCTGAACCCATCATTGAAGAACCAGTGCTTAGCCTTGATCCAGTTGCAGCAGCC 321
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      GACCTGAAATCTGAAGAAAGGAAGCAGAAGCTATCTAGGTACAGAAAGAAGAAGGTGAAG 900
consensus_14347#1      ATTTCGATGATGTCTGGCAGTGAGAACGTAATGGATGAAACTATAGAGGTTGCAGATATC 381
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      AGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCA 960
consensus_14347#1      AGCGACATTCAGAATGACTCTCTTTTAAGCGAAGTATTATACGAGTGCGAGAAGGAACTC 441
                                                                                   

consensus_14347#2      ------------------------------------------------------------
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      AGAGTGCGAGGGAGGTTTGCCAAGATCGAAGAAGGCGACTTGCTCAAGCCAAGGAAGTAG 1020
consensus_14347#1      ATGGAGAAGTCCGCAATCGAAGAGACTATTTCTGAACTGCTGGACGTCAAGATTCCTATG 501
                                                                                   

consensus_14347#2      ---------GAANCAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCCCAGTGAAGGAAG 51
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      TAAGAGGAAGAAACAAATTAAAGTAACTCCTGGAGAGGACGAGCTGCC-AGTGAAGGAAG 1079
consensus_14347#1      CTGCAAGTGGAAGAGTTCCCTAGGGAAACCCAAGTACAACTACCGGCCATGGAGAAGGAG 561
                                                                                   

consensus_14347#2      GAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGNTCGTNCTCGGAGGAGGAGGAG 111
consensus_14347#3      ------------------------------------------------------------
consensus_14347#0      GAACCTTGGCTTCTAGAAGCTTCTAGCTGGTGGAGGAGGA-GGAGGAGGAGGAGGAGGAG 1138
consensus_14347#1      AAGCCATCAGTTCCTGAATGTTGTTCACTCCAGAAAAGTGTCAGTTCTGGGTGCCTCAAC 621
                                                                                   

consensus_14347#2      AGGAAAGGATCCCAAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAG 171
consensus_14347#3      ---------------------------AAATTTCCTCTTCAAACGCAAAACGC--TTTAG 31
consensus_14347#0      AGGAAAGGATCC-AAGGTGCAAGGCCCAGCCTTTGTGTGTAGGGGGAGGGCGAGGCCAAG 1197
consensus_14347#1      TCAGCTGATTGGATCAATGGACCAGCCAGGCCAAACTTCCTGGACTTCCAAGGATTGGAC 681
                                                  *         *             *      * 

consensus_14347#2      GTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGG 231
consensus_14347#3      CTAG--------CTTCCTAAACAGAGCAAC-----TAAAAATTCACTCACTCACCTTTGA 78
consensus_14347#0      GTGGAAGAGAGGCGCCGTAGTCGCGGCTGCACTTGTCGGAATTAATTTTAGCTGCTTTGG 1257
consensus_14347#1      TTTGA---GACAGCGTTTGGGTTGAGGAGGGCATACAGCGAAGGAGACATTCAGGTTTGA 738
                        * *             *       *              *   *      *   **** 

consensus_14347#2      ATCGTCTCCTTCTACTACTAGACTA-GTACTTGTAATTCTATTTTCCTTCCAATGCATGT 290
consensus_14347#3      GATTTCTTTTCTTCTTCC---ACCA-CTACTTGTAATTCTATTTTCCTTCCAATGCATGT 134
consensus_14347#0      ATCGTCTCCTTCTACTACTAGACTA-GTACTTGTAATTCTATTTTCCTTCCAATGCATGT 1316
consensus_14347#1      TCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTATAT--------AGGTAAG- 789
                           * *  *  *           *  *****   * * *** *        * * * * 

consensus_14347#2      GTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGC 350
consensus_14347#3      GTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGC 194
consensus_14347#0      GTAATAATAATTAGTAATAATGCTAGTAGTCGGTATTACTTGCTGCGAGCTGAAGGCCGC 1376
consensus_14347#1      GTAGTGATAGATA--AGGAATCGTTGTGAGCA--AGCAACGGCTGTGTATTGTAAAGTGT 845
                       *** * ***  **  *  ***  * **   *   *  *   **** *   ** *    * 

consensus_14347#2      CCATCC-ATGTACAAATGGCTCGATGAAGAAAC---TTATCACTAGTAGTAATAAACTTC 406
consensus_14347#3      CCATCC-ATGTACAAATGGCTCGATGAAGAAAC---TTATCACTAGTAGTAATAAACTTC 250
consensus_14347#0      CCATCC-ATGTACAAATGGCTCGATGAAGAAAC---TTATCACTAGTAGTAATAAACTTC 1432
consensus_14347#1      GTTTCCGAAACACAGGTGTCGAGAAAAGAAATCACCTTTGCCCTTGTATGTATATGTGCG 905
                          *** *   ***  ** *  **  *  ** *   **  * ** ***   ***      

consensus_14347#2      AGCTCCCTTCAGGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------ 454
consensus_14347#3      AGCTCCCTTCAGGCTTAAAA---------------------------------------- 270
consensus_14347#0      AGCTCCCTTCAGGCTTCGCACTGGCACTGGAAGGCAT----------------------- 1469
consensus_14347#1      TGGTGCTTCTTTACTCAAATTAAAGGCCATCAAAGCTATGACACTGATTTTACTATTTCT 965
                        * * * *     **                                             

consensus_14347#2      -----------
consensus_14347#3      -----------
consensus_14347#0      -----------
consensus_14347#1      GCCCAAAAAAA 976