These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1997 fasta sequence [CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCACTGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATATCATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATGAGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGGTCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAGAAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCATAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTACATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAAAGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAAGCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAAATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTGAACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCTGGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCAGGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTGACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATGAACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATGGAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACTGAAGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAATGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTAGCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTCACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGCAGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTTTATATCAGCACTTGAACTG] [+] EMBL AK101764 [CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCACTGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATATCATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATGAGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGGTCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAGAAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCATAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTACATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAAAGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAAGCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAAATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTGAACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCTGGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCAGGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTGACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATGAACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATGGAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACTGAAGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAATGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTAGCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTCACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGCAGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTTTATATCAGCACTTGAACTG] consensusID : consensus_1435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [ACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGTACGTTTGAATGGTGAAAATATGTATTTCCATTAGAATAGTTCTACGTAAATAAGTAATGAATTGGTGTGCATCATTTCACTTGGTCTGGTCTAGGCTGGACACTGATTTTGTTTAAACCATTGCCATTTAATGCGATAGCTTAAAATGAATTCTAAATTGAATGTACATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGCAAGG] [+] EMBL CF323585 [ACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGTACGTTTGAATGGTGAAAATATGTATTTCCATTAGAATAGTTCTACGTAAATAAGTAATGAATTGGTGTGCATCATTTCACTTGGTCTGGTCTAGGCTGGACACTGATTTTGTTTAAACCATTGCCATTTAATGCGATAGCTTAAAATGAATTCTAAATTGAATGTACATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGCAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1435#0 CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCAC 60 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATAT 120 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 CATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATG 180 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 AGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGG 240 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAG 300 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 AAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCA 360 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTAC 420 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAA 480 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 AGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAA 540 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 GCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAA 600 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAA 660 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTG 720 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 AACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCT 780 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 GGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCA 840 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 GGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTG 900 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATG 960 consensus_1435#1 ------------------------------------------------ACACCTATAATG 12 ************ consensus_1435#0 AGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAA 1020 consensus_1435#1 AGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAA 72 ************************************************************ consensus_1435#0 TTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATT 1080 consensus_1435#1 TTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATT 132 ************************************************************ consensus_1435#0 GCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTC 1140 consensus_1435#1 GCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTC 192 ************************************************************ consensus_1435#0 GCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCG 1200 consensus_1435#1 GCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCG 252 ************************************************************ consensus_1435#0 CTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATG 1260 consensus_1435#1 CTGTACGTT--TGAATGGTGAAAATATGTATTTCCATTAGAAT--AGTTCTACGTAAATA 308 *** * ** * ** * * * *** ** * ** * *** * * * *** consensus_1435#0 AACG-TGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATG 1319 consensus_1435#1 AGTAATGAATTGGTG---TGCATCATTTCACTTGGTCTGGTCTAGGCTGGACAC-TGATT 364 * ** **** * *** * * ** * ** * ** * ** * ** consensus_1435#0 GAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGA-AGCGTGGTGTCGGCCATAGAACTGA 1378 consensus_1435#1 TTGTTTAAACCATT------GCCATTTAATGCGATAGCTTAAAATGAATTCTA-AATTGA 417 * * * * * ** * * ** *** * * ** ** *** consensus_1435#0 AGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGA 1438 consensus_1435#1 ATGTA----CATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGC 473 * * * ** **** * * * ** * * * * * ** consensus_1435#0 GGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAA 1498 consensus_1435#1 AAGG-------------------------------------------------------- 477 consensus_1435#0 TGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGA 1558 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGT 1618 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTA 1678 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 GCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTC 1738 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTA 1798 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATC 1858 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 ATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGC 1918 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 AGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTT 1978 consensus_1435#1 ------------------------------------------------------------ consensus_1435#0 TATATCAGCACTTGAACTG 1997 consensus_1435#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||