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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1744 fasta sequence
[TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCGCCTTGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT-CCAA-GGCACAGGAGATAC-TTGTTGCTCTGACAG-AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG-TTGCAGGTTG-AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA-TGCCCAGGATTGGGC-TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA-GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT-CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCAAACG]
[+] EMBL CA754180 [TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCGCCTTGTCCTGTAGCTGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTCTACTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA ]
[+] EMBL AK065606 [ CTCGCCTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCCCCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCTCCATGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT CCAA GGCACAGGAGGTAC TTGTTGCTCTGACAG AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG TTGCAGGTTG AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCC ]
[+] EMBL CB657758 [ CCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACCGCCGGAGTCCCTCCCGTACCCGTATATTGCCGTGTCAGCCACCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTT CCAA GGCACAGGAGATAC TTGTTGCTCTGACAG AGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAG TTGCAGGTTG AAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTANGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAA ]
[-] EMBL BI807243 [ ctCGAGGATACT CTAAAGGGCG GCGCG CTCT CGTACCCCAG T CG CG TCACCGGAGGGTCTG ACCG CGGAGTCCCTCCCGTA CCGTATATTGCCGTGTCAGCCACCG CG AGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTAGCGCGCGTCAGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTACCAAGGGCACAGGAGATACTTTGTTGCTCTGACAGNAGGTCANNGACAGAGTCAAGCTTCTCAACGATTTGAAGTTTGCAGGTTGAAAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCAT ]
[+] EMBL OSS12202A [ GACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAACATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGANTGCCCAGGATTGGGC TGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATCTCTCTGG ]
[+] EMBL OSS12275A [ GACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATACTGGCCTTCTTGAAGAAGCCTCAAACATCATAAAGGCATTAAACAAAGCACTAGATAACTTTGAGATGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATATTACTGCAGGTGCTGGTGGCACCGA TGCCCAGGATTGGGCTTGACATGTTACTGAGGATGTATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTGAAGAAGCTGGATTAAAATCAGCTACCATTGAATTAGAAGG AGGTATTCCTATGG ]
[-] EMBL CB657759 [ ATGCCTATGGGTATCTCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGCTTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTT ]
[+] EMBL AU088682 [ ACTGCCAGAAGAGTCCATGGATGTAGAAATACCCGAAGAGGATCTGGAGATAA CTTCACTAGAGCAGNCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCA GTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAA TACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCAaaaaaaaa ]
[+] EMBL CB679512 [ ACAGAGGAGAGGAGCCACGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGACG]
[+] EMBL AU096121 [ GATCGCCGAGGAGCAGC GGCGTCGGA ATCAAGCAGATCCGCGGCGACGCGTTGAAGCCGGA TGGGGGCAGCAGATCCGCAA TACGTCTTCCACCCNTACAAGCTCGTCAAGGACGTCCGCACCGCTTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACA CTTCATCAGAGCCTACCTCAAGTACAAGCTNTCTGCCGCTGCTGAGGAGCAAAGCGTCCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCAaaaaaaaa ]
[+] EMBL CF196752 [ AGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGT CAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGTGCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGAATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAAaaaaaaa ]
consensusID : consensus_14368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 700 fasta sequence
[GAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA]
[-] EMBL CB622916 [GAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATAT ]
[-] EMBL CA763264 [ AGGCGGCAAAGGAGGCCAAAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATTCCCACGGGGATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCCCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCCCGGCGACGCGGTGAAGGCGGAGCGGGGGCAGCAGATCCGCAANTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTTTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA]
[+] EMBL CB096625 [ CTGTTCGCATGGTCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGCGCGTCGGAGATCAAGCAGATCCGCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGGACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGGCGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTAAGAATAGCCTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGCACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAAGCCTCTCACCTGCC ]
consensusID : consensus_14368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[GCTCCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCCGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCACAAGAGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGTCGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGATGATACAGAATGATGTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATACCTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATGATAGGATACAAG]
[+] EMBL CB622915 [GCTCCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCCGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGTCCTCCGTTCCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGCTTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCACAAGAGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGTCGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGATGATACAGAATGATGTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATACCTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATGATAGGATACAAG]
consensusID : consensus_14368#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence
[AGTGCCTTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA]
[+] EMBL CB618897 [AGTGCCTTAATGATTGACTGCCCGCGGCTGCTCCTGGCGGCCGCGCGCGCCTCTCCGTACCCCAGCTCCGCCGCTCACCGGAGGGTCTGCACTGCCGGAGTCCCTCCCGTACCCGTTTATTGCCGTGTCAGCCGCCGCCGCAGGCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTAGCGCGTGTCGGTGAAGTCAGGCAGTCTGCTGGTTTGGATCAGCTTGAGGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TGCTCCCGCCTCGCGTCCTCTCCGCCCCGCTCCGCTCGCCGGCGAGCCGCCGCCGCCGCC 60
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ---------------------------------------------------------GCT 3
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 CCAGCCCCACACCCTCGTCGGCGCGTCGCCTACCGGTGGCCATCTTCGCCCACTCCCGCG 120
consensus_14368#1 ---------------------------------------------GAAGAGGATCTGGAG 15
consensus_14368#2 CCTTCCCTTGTAGCTGAAGTGCGGTAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 61
consensus_14368#3 -----------------AGTGCCTTAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 41
consensus_14368#0 CCTTGTCCTGTAGCCGAAGTGCGGCAATGATTGACTGCCCGCGGCT--GCTCCTGGCGGC 178
consensus_14368#1 ATAAGCTTCACTAGAGCAG-GCGGCAAAGGAGGCCAGAATGTGAACAAGGTGGAGACGGC 74
** ** ** * * * * * * * * * ****
consensus_14368#2 CGCGCGCGCCTCTCCGTACCCCC----GCTCCGCCGCTCACCGGA-GGGTCTGCACTGCC 116
consensus_14368#3 CGCGCGCGCCTCTCCGTACCCCA----GCTCCGCCGCTCACCGGA-GGGTCTGCACTGCC 96
consensus_14368#0 CGCGCGCGCCTCTCCGTACCCCA----GCTCCGCCGCTCACCGGA-GGGTCTGCACCGCC 233
consensus_14368#1 TGTTCGCATGG-TCCATATTCCCACGGGCATCGCTGTTCGTTGCACAGAGGAGAGGAGCC 133
* *** *** ** ** ** *** * ** * * * * ***
consensus_14368#2 GG--AGTCCCTCCCGTACCCGTTTATTGCCGTGTCA-GCCGCCGCCGCAGGTCCTCCGTT 173
consensus_14368#3 GG--AGTCCCTCCCGTACCCGTTTATTGCCGTGTCA-GCCGCCGCCGCAGG--------- 144
consensus_14368#0 GG--AGTCCCTCCCGTACCCGTATATTGCCGTGTCA-GCCACCGCCGCAGGTCCTCCGTT 290
consensus_14368#1 AGTTGGCCAACAAGATAAAGGCCCTGAGCCGGCTGAAGGCGAAGCTGCTGGTGATC-GCC 192
* * * ** * **** * * * * ** ** **
consensus_14368#2 CCTGTGCAATCTGCATCCTCTGGGTCAGGAGGCCAATCGAGCGTTGCAGAAAGTTCGGAG 233
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 CCTGTGCAATCTGCATCCTCTGGGTCAGGAAGCCAATCAAGCGTTGCAGAAAGTTCGGAG 350
consensus_14368#1 GAGGAGCAGCGCGCGTCGG--AGATCAAGCAGATCCGCG-GCGACGCGGTGAAGGCGGAG 249
consensus_14368#2 GCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTA 293
consensus_14368#3 -CTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTCTA 203
consensus_14368#0 GCTACCGAATGGGCCATGCAGGATTTCTACGCTTTGCGGAAGGATGTCGAGCTGGCTGTA 410
consensus_14368#1 TGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCTACAAGCTCGTCAAGGACGTCCGC 309
* * * * * *** * *** *** ** *
consensus_14368#2 GCGCGTGTCGGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGC 352
consensus_14368#3 GCGCGTGTCGGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGA------ 256
consensus_14368#0 GCGCGCGTCAGTGAAGTCAGGCAGT-CTGCTGGTTTGGATCAGCTTGAGGAGGAAATCGC 469
consensus_14368#1 AC-CGCCTGCGAGACGTCGGACATCACCGGCGTCATGGA-CGGC--GAGCTGGACACC-- 363
* ** * * ** *** * ** * * * **** * ** *** ***
consensus_14368#2 TTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCA-CAAG 411
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TTCGCTCGAGAAGAAATCTGCAGATAGTTCCTTGTGGGATGATCCTTCCAAGGCA-CAGG 528
consensus_14368#1 TTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTGAGGAGCAAAGCGTCAAG 423
consensus_14368#2 AGATACTTGTTGCTCTGACAGAGGTCAAAGATAGAGTCAAGCTTCTCAACGATTTGAAGT 471
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 AGATACTTGTTGCTCTGACAGAGGTCAAAGACAGAGTCAAGCTTCTCAACGATTTGAAGT 588
consensus_14368#1 TGACAGATTTGCATCCAGTGTCCGATGCAACAAGCCAACAACCAATGCTTGTGCTATAGG 483
consensus_14368#2 CGCAGGTTTAACCAACTCGATATTCTTCTCCACCCATACTAGAGAT-GATACAGAATGAT 530
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TGCAGGTTGAAGAAGCTGAGACCATTGTAAAGCTTACTGAGGAGTTAGATTCCATAGATA 648
consensus_14368#1 CGCAGAATTTTGACGCAGAGCAAGAACCCCATCACGTAGTAAGATTGTA---AGAATAGC 540
consensus_14368#2 GTAGAATTCTAATTGTTATTATACTATAGCTATATATATTGAAATGATTGTTTAATA--C 588
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 CTGGCCTTCTTGAAGAAGCCTCAAAGATCATAAAGGCATTAAACAAAGCACTAGATA--A 706
consensus_14368#1 CTGGAATTAACCGTGTGCTTGTGCTATAGGTGCAGAATTCGTTTTGCTTCTCAACTAAGC 600
consensus_14368#2 CTCCTATAGTAAATTAGTAATTCTCATTATTATAATGTGGATTTGCCGCGTTCATAAATG 648
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 CTTTGAGA-TGACACAGCTTCTTTCTGGACCTTATGACAAGGAAGGTGCTGTGATTAATA 765
consensus_14368#1 ACCCAAAATTTATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCA 660
consensus_14368#2 ATAGGATACAAG------------------------------------------------ 660
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TTACTGCAGGTGCTGGTGGCACCGATGCCCAGGATTGGGCTGACATGTTACTGAGGATGT 825
consensus_14368#1 ATA-TATATAAGCCTCTCACCTGCCTGAAAAAAAAAAAAAA------------------- 700
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 ATGTTAGGTGGGGAGAGAAGCAGCGGTACAAGACAAGAGTGGTTGAGAAATCCCCTGGTG 885
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 AAGAAGCTGGAATAAAATCAGCTACCATTGAATTAGAAGGAAGATATGCCTATGGGTATC 945
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TCTCTGGGGAGAAAGGGACACACAGAATTGTTCGTCAGTCCCCATTCAATGCTAAAGGGC 1005
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TTAGGCAGACAAGCTTTGCTGGTGTTGAAGTAATGCCTCTACTGCCAGAAGAGTCCATGG 1065
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 ATGTAGAAATACCCGAAGAGGATCTGGAGATAAGCTTCACTAGAGCAGGCGGCAAAGGAG 1125
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 GCCAGAATGTGAACAAGGTGGAGACGGCTGTTCGCATGGTCCATATACCCACGGGCATCG 1185
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 CTGTTCGTTGCACAGAGGAGAGGAGCCAGTTGGCCAACAAGATAAAGGCCCTGAGCCGGC 1245
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TGAAGGCGAAGCTGCTGGTGATCGCCGAGGAGCAGCGGGCGTCGGAGATCAAGCAGATCC 1305
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 GCGGCGACGCGGTGAAGGCGGAGTGGGGGCAGCAGATCCGCAACTACGTCTTCCACCCCT 1365
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 ACAAGCTCGTCAAGGACGTCCGCACCGCCTGCGAGACGTCGGACATCACCGGCGTCATGG 1425
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 ACGGCGAGCTGGACACCTTCATCAGAGCCTACCTCAAGTACAAGCTCTCTGCCGCTGCTG 1485
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 AGGAGCAAAGCGTCAAGTGACAGATTTGCATCCAGTGTCCGATGCAACAACCGTGCTTGT 1545
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 GCTATAGGCGCAGAATTTTGATGCAGAGCAAGAACCCCATCACGTAGTAAGCTTGTAAGA 1605
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 ATAGCCTGAAATTAACCGTGCAGAATTCGGTTTGCTTGGCTCTACTAAGCACCCAAATTT 1665
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 ------------------------------------------------------------
consensus_14368#3 ------------------------------------------------------------
consensus_14368#0 TATTTTGGGGCTTCATGTATTAGTGGATATATTAATTTCATTTCTACCCAATATATATAA 1725
consensus_14368#1 ------------------------------------------------------------
consensus_14368#2 -------------------
consensus_14368#3 -------------------
consensus_14368#0 GCCTCTCACCTGCCAAACG 1744
consensus_14368#1 -------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||