These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1413 fasta sequence [CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTCGCCTTCTAGGTAGCCTGTGCATATGACTTAAAAAAAAATTAATCAATATAGCCTCTTATATTAATGAGCTTGTCTATGGTGCTTTCTACAGGTATTCTACTACAAGTAGAAACGATCTAAACCATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGGGTAATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCGCATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCAGCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGCCATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGCCAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACGGCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCCAACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCGAATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATTGCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA] [+] EMBL AK109778 [CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTCGCCTTCTAGGTAGCCTGTGCATATGACTTAAAAAAAAATTAATCAATATAGCCTCTTATATTAATGAGCTTGTCTATGGTGCTTTCTACAGGTATTCTACTACAAGTAGAAACGATCTAAACCATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGGGTAATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCGCATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCAGCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGCCATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGCCAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACGGCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCCAACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCGAATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATTGCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA] [+] EMBL BF430467 [ AGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCATCAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTTATGCTGT ] consensusID : consensus_14376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1132 fasta sequence [NNTTTTTTTTTTTTATTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT-CCATGG-AGC-AAAGGGATCG-AACGACCGCCGG-AACCCCGTCGCACAGACG-ACGGCGTCGGCGCC-ACGGATCGCATCGACC-AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC-TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG-CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTT] [-] EMBL AU096484 [NNTTTTTTTTTTTTTTTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGNATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTNGAGAGGACGATTGTNAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATG ] [-] EMBL AK105919 [ TTATAGTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AACGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTT] [-] EMBL AK070247 [ TTATAGTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTCCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AATGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGT ] [-] EMBL AU057362 [ TTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGNTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGNCTTATAATGGTGNAATTTATTCCTGATGAC ] [-] EMBL AU057430 [ TTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGNTTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGNATAACA ] [-] EMBL CF335848 [ AGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AACGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAtttctactc ] [-] EMBL AU057429 [ CCTTCCCATGGAAGCAAAAGGGATCGAAACGACCGCCGGAAACCCCTTCGCACAGACGAACGGCGTCGGCGCCAACGGATCGCATCGACC AATTTGTCTGTGCCCTCCATGA GTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGNGGCGGCGATGGTGTGGAAAGCGGTGGCCATT ] [-] EMBL OSS14711A [ TCGCATCGACCAAACTTGTCTGTGCCCTCCATAACGTNAGCCCTCACGAGCTGAAGGTTTNGGTCC TGGGGCAGGCTTCTGC GGCNCGGCCCACGTCTGTCGTG CC GCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTNCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGNCGTCCGACGAACTANCGGNCGCGNAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGNCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCG ] [-] EMBL OSC7791 [ CATCGACN AACTTGTCTGTGCCCTCCATGACGTNAGCCCTCACGAGCTGGAGGTTTGGNTCC TGGGGCAGNCTTCTGC GGCGCGGCCCACGTCTGTCGTG CC GCGNCCCGGCCGAAGCCNCTCTCCAGAAGCTTCTCCACGACACGCTTNCCGGTNCGTNCCGTCGAGCCGGCCANGAAGACGGTGGTCGTCTTCTTNCCCTCCGACGAACTAGCGGGCGCGGANTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGNCGTCGGCGATGGTGTGGAAAGC ] [-] EMBL AU057361 [ GGGTCCTTGGGGCAGGCTTTTNCGGGCGCGGCCCACGTCTNTCGTGCCCGGCGACCACGCCGAAGCCCNTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCNTCGAGCCGGCCACGAAGACGNTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGNCNGCGGCGATGGTGTGGAAAGCGGTGGCCATT ] [-] EMBL OSS12809A [ CGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCAT ] consensusID : consensus_14376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCCTTTGCTCCATGGAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGTTACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGGGCTGCGATGGGTCAACTGTTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTTTAGTGCTGGTCGCAAAGCTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGAGGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTACGAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGAGAGGAATCTTCCCTACAAAGTTGTCGAGATTGTCACCCGAGCTGAAGCTCACAATCGTCCTCTCAAGGATCTGTTTGCTTCTATTAAGCAAAGCTGAGTAACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTATTCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTGTCCTAATATAGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCATCGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA] [+] EMBL AU096683 [CCCTTTGCTCCATGGAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGTTACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGGGCTGCGATGGGTCAACTGTTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTTTAGTGCTGGTCGCAAAGCTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGAGGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTACGAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGAGAGGAATCTTCCCTACAAAGTTGTCGAGATTGTCACCCGAGCTGAAGCTCACAATCGTCCTCTCAAGGATCTGTTTGCTTCTATTAAGCAAAGCTGAGTAACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTATTCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTGTCCTAATATAGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCATCGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA] consensusID : consensus_14376#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [GATACGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCA-GGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTC-TGGCTCCATGACTATATTCC-C-TGTTGGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACC] [+] EMBL CF335847 [GATACGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCA GGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTC TGGCTCCATGACTATATTCC C TGTTGGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACC] [-] EMBL BI807142 [ TTTTTAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG ATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCNTGGCTCCATGACTATATTCCACGTGCTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14376#1 ------------------------------------------------------------ consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTT 60 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 ------------------------------------------------------------ consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 CCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGC 120 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 ------------------------------------------------------------ consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 GCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAA 180 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 -----------------------------------------------NNTTTTTTTTTTT 13 consensus_14376#3 --------------------------------------------------------GATA 4 consensus_14376#0 TTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACA 240 consensus_14376#2 ----------------------------------------------CCCTTTGCTCCATG 14 consensus_14376#1 TATTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAAT 73 consensus_14376#3 CGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAAT 64 consensus_14376#0 AGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGT 300 consensus_14376#2 GAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGT 74 * * * * consensus_14376#1 CACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACAC--ATCACTA 131 consensus_14376#3 CACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACAC--ATCACTA 122 consensus_14376#0 TTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGC 360 consensus_14376#2 TACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGG-GCTGCGATGG-GTCAACTG 132 * * * * * * ** consensus_14376#1 TACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAG 191 consensus_14376#3 TACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAG 182 consensus_14376#0 CGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTT----GCCGGTGCGGCCCGTCGAG 416 consensus_14376#2 TTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTT------TAGTGCTGGTCGCAAAG 186 * * ** * * * ** consensus_14376#1 TTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAAC-AGATCCTTG-AGAG----GA 245 consensus_14376#3 TTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAAC-AGATCCTTG-AGAG----GA 236 consensus_14376#0 CCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGAC-GAACTAGCG-GGCGCGGAGT 474 consensus_14376#2 CTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGA 246 * * * * * * * * * * consensus_14376#1 CGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG 305 consensus_14376#3 CGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG 296 consensus_14376#0 CTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGG 534 consensus_14376#2 GGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTAC 306 * * * * consensus_14376#1 --CATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGT 363 consensus_14376#3 --CATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGT 354 consensus_14376#0 GGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGA 594 consensus_14376#2 GAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGA 366 * **** * * * * consensus_14376#1 AAAGTGTATCCTCTGGCTCCATGA---CTATATTCCCTGTTGG-TGGT--TGTTCAGTCA 417 consensus_14376#3 AAAGTGTATCCTCTGGCTCCATGA---CTATATTCCCTGTTGGGTGGT--TGTTCAGTCA 409 consensus_14376#0 AAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACT 654 consensus_14376#2 GAGGAATCTTCCCTACAAAGTTGT---CGAGATTGTCACCCGAGCTGA--AGCTCA--CA 419 * * * * ** ** * * * * * consensus_14376#1 GGCCTCCAGGCCTTAT-------AATGGTGTAATT-TATTCCTGATGACCTGATATGTTT 469 consensus_14376#3 GGCCTCCAGGCCTTAT-------AATGGTGTAATT-TATTCCTGATGACCTGATATGTTT 461 consensus_14376#0 ATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTC 714 consensus_14376#2 ATCGTCCTCTC------------AAGGATCTGTTT--GCTTCTATTAAGCAAAGCTGAGT 465 ** * * * * * * * * * * * consensus_14376#1 CTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTA-TATGCTG 528 consensus_14376#3 CTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTA-TATGCTG 520 consensus_14376#0 GCCTTCTAGGTAGCCTGTGCATATGACTTAA--AAAAAAATTAATCAATATAGCCTCTTA 772 consensus_14376#2 AACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTAT- 524 * * * * ** * * consensus_14376#1 GATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATC 588 consensus_14376#3 GATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATC 580 consensus_14376#0 TATTAATGAGCTTGTCTATGGTG---CTTTCTACAGGTATTCTACT-ACAAGTAGAAACG 828 consensus_14376#2 --TCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTG 582 * * * * * * * * * * consensus_14376#1 TTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTAC------TGTGCCAAAGTTGT 642 consensus_14376#3 ATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTAC------TGTGCCAAAGTTGT 634 consensus_14376#0 ATCTAAACC-ATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGG-GT 886 consensus_14376#2 TCCTAATAT-AGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCAT 641 *** * * * * * * * * consensus_14376#1 CCACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGG 702 consensus_14376#3 CCACC------------------------------------------------------- 639 consensus_14376#0 AATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCG 946 consensus_14376#2 CGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA------ 695 consensus_14376#1 CGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCA 762 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 CATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCA 1006 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 CGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGC 822 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 GCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGC 1066 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 CGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGC 882 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 CATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGC 1126 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 CCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCG 942 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 CAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACG 1186 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 CGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGG 1002 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 GCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCC 1246 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 GGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGG 1062 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 AACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCG 1306 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 TGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTT 1122 consensus_14376#3 ------------------------------------------------------------ consensus_14376#0 AATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATT 1366 consensus_14376#2 ------------------------------------------------------------ consensus_14376#1 TCTACTATTT------------------------------------- 1132 consensus_14376#3 ----------------------------------------------- consensus_14376#0 GCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA 1413 consensus_14376#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||