cluster # 14396

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Oryza sativa
cluster # 14396 cluster # 14396 Sequences # 16 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14396#0 length = 780 sequences # 10
consensus_14396#1 length = 766 sequences # 1

consensus_14396#2 length = 607 sequences # 3
consensus_14396#3 length = 454 sequences # 1
consensus_14396#4 length = 299 sequences # 1

consensusID : consensus_14396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 780
fasta sequence

                              [GGACAGACAAACAGATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC---GGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGTCACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA-CAATAATGAAATATGTTTTCAGTTTCCGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120365             [GGACAGACAAACAGATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC   GGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGTCACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAG                                          ]
[+] EMBL OSS12307A            [              ATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGNCACCACCTGCCGCCTCGCCGCCGNGCCGCTCGTCCTCGCACCGNTGNCTCGNCGCCCCACCACGGTCGCCTTTNCCGTCGCCGCCACCGGCATCAAGTACGTAGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGNCGACGGAACCGTCAGCGAGACGGAGGTGNCGNAGGTCGTCAAGGCAGACCAGGACGNGTGGGCCAAAGTTGAGGACAAGTACGCCGTCATCGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS12575A            [              ATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTACGTAGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGNGGGCCGACGGCACCGGCAGCNAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCNTGGGCCAAATTTNAGGACAAGTACGNCGTCANCGNCATCGGTTTCG CNCGNTCNTNGGCCTNTGGACTGCCATAGGGGCCATCAAGGCCATGGACAGGTTTCCATTTTTtc                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS15676A            [                  CCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCNACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC   GGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGNGGCCGACGG ACCGGCAGCNAGACGGAGGTNCCGGAGGTCGTCAAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB683553             [                         ATCACCCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC   GGTCTCAGGGCGTCCAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGATGAGGACAAGTACGCCGGCACCGCCATCGGCGTCACCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGAGGATTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCACAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAACAGGAGGTTGCTAACGTTTTGAGACTGGACCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAG                                          ]
[+] EMBL AK061626             [                          TCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC   GGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGTCACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAGTTTC                                      ]
[-] EMBL CB683084             [                                              CACCCGNTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTTGTCCTCGCACCGCTGCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTAC   GGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGTGCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGTCACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTAAAGCAATAATGAAATATGTTTTCAGTTTCCGCTCCcttaaagg                        ]
[+] EMBL CB000193             [                                                                                                                                                                                                                                                                                              GAGGACAAGTACGCCGTCACCGCCATCGGCGCCTTCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAGTTTCCGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000273             [                                                                                                                                                                                                                                                                                              GAGGACAAGTACGCCGTCACCGCCATCGGCGTCTTCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAGTTTCCGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF304974             [                                                                                                                                                                                                                                                                                                                                                                            ATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAA CAATAATGAAATATGTTTTCAGTTTCCGCTCCAAAAAAAAAAA                     ]




>consensus_14396#0
GGACAGACAAACAGATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCA
CCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCT
GCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTACGGTCT
CAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGT
GCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGT
CACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCCATCAAGGC
CATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGG
GTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAAT
CAAGAGCACCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAA
GATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAG
GAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAA
AGCAGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAAT
AATGAAATATGTTTTCAGTTTCCGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14396#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 766
fasta sequence

                              [CCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGNCGNCTCGNCGCCGNGCCGTTCGTNCTCGNACCGCTGCCTCGCCGNCCCACCACGGTCGCCTTTGCCGTTGCCGCCACCGGCATCAAGTACGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGNCGGNCGACGGCACCGGCAGNGAGACGGAGGTGCCGGAGGTCGTCAAGNCAGCCCAGGNCGTGTGNGCCAAAGTTNAGGACANGTANGAGGTTACCTACATCGCGTTTGGCGAGTNTCNTNGGTCTCTGGACTGTCATAGGCGTCATCAAGGCCATGGACAAGGNTTCCACTTTTGCCNGGNGTGNTTNAGCTCGTTGGGAATTGTGTATANANNGTGGGTTTACATACCGGAACTTCATNTNNCACNNAANCAGGGAAGTTTTTGTGAGNAAATCNAGAGCAACTACAATGTAATNANCGGGAGAAGAAGTAATTTCATACCATTTTNGGGAAGNTTNTTTAAAATAAGGGGCANAAGNNTTGAATTTTTAGGAAGCATGCAATTGATNAGGGGTTNTAACGTTTNAGGTTGGCCCTTCATTTTTTCATTTATCCCTGGTTAAGAAGNAATTTTTNATTTTGTGGTNTAATGCCTNTTTATNAAATATGGAATTTTAATTCGNAAANAATTNCCNTTANNGTTGGTNCAATTTTTNCTTNTNGTNNTTNNNGNTTNAANNNTGTNTNTTTTNTTG]

[+] EMBL AU070433             [CCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGNCGNCTCGNCGCCGNGCCGTTCGTNCTCGNACCGCTGCCTCGCCGNCCCACCACGGTCGCCTTTGCCGTTGCCGCCACCGGCATCAAGTACGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGNCGGNCGACGGCACCGGCAGNGAGACGGAGGTGCCGGAGGTCGTCAAGNCAGCCCAGGNCGTGTGNGCCAAAGTTNAGGACANGTANGAGGTTACCTACATCGCGTTTGGCGAGTNTCNTNGGTCTCTGGACTGTCATAGGCGTCATCAAGGCCATGGACAAGGNTTCCACTTTTGCCNGGNGTGNTTNAGCTCGTTGGGAATTGTGTATANANNGTGGGTTTACATACCGGAACTTCATNTNNCACNNAANCAGGGAAGTTTTTGTGAGNAAATCNAGAGCAACTACAATGTAATNANCGGGAGAAGAAGTAATTTCATACCATTTTNGGGAAGNTTNTTTAAAATAAGGGGCANAAGNNTTGAATTTTTAGGAAGCATGCAATTGATNAGGGGTTNTAACGTTTNAGGTTGGCCCTTCATTTTTTCATTTATCCCTGGTTAAGAAGNAATTTTTNATTTTGTGGTNTAATGCCTNTTTATNAAATATGGAATTTTAATTCGNAAANAATTNCCNTTANNGTTGGTNCAATTTTTNCTTNTNGTNNTTNNNGNTTNAANNNTGTNTNTTTTNTTG]




>consensus_14396#1
CCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATGGCCGCCAC
CACCTGNCGNCTCGNCGCCGNGCCGTTCGTNCTCGNACCGCTGCCTCGCCGNCCCACCAC
GGTCGCCTTTGCCGTTGCCGCCACCGGCATCAAGTACGGTCTCAGGGCGTCGAGGGGCGT
GGCGATCAGGNCGGNCGACGGCACCGGCAGNGAGACGGAGGTGCCGGAGGTCGTCAAGNC
AGCCCAGGNCGTGTGNGCCAAAGTTNAGGACANGTANGAGGTTACCTACATCGCGTTTGG
CGAGTNTCNTNGGTCTCTGGACTGTCATAGGCGTCATCAAGGCCATGGACAAGGNTTCCA
CTTTTGCCNGGNGTGNTTNAGCTCGTTGGGAATTGTGTATANANNGTGGGTTTACATACC
GGAACTTCATNTNNCACNNAANCAGGGAAGTTTTTGTGAGNAAATCNAGAGCAACTACAA
TGTAATNANCGGGAGAAGAAGTAATTTCATACCATTTTNGGGAAGNTTNTTTAAAATAAG
GGGCANAAGNNTTGAATTTTTAGGAAGCATGCAATTGATNAGGGGTTNTAACGTTTNAGG
TTGGCCCTTCATTTTTTCATTTATCCCTGGTTAAGAAGNAATTTTTNATTTTGTGGTNTA
ATGCCTNTTTATNAAATATGGAATTTTAATTCGNAAANAATTNCCNTTANNGTTGGTNCA
ATTTTTNCTTNTNGTNNTTNNNGNTTNAANNNTGTNTNTTTTNTTG

consensusID : consensus_14396#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 607
fasta sequence

                              [TCTCAGCCACCCAGGACGCGTGGCCAAGTTGAGACAAGTACGCCGTCACC-CCATCGGCGT--CCCGCGCTCGTC-GCCTCTGGACT-CCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGC-AAATCAAGAGCACCTAC-ATG-AATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCC-AG-TG-AAGAGGAGG-TTGCTAACGTTT-TGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATT-GCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAATAATGAAATATGTTTTCAGTTTCCGCTCCAGACAACTGCGTACTACAAACATCATTACATCAATGTGGGGTTCCCAATCACCTGTATTTTCTTTTATCGAATTCAATTTGAAG-CCGTTGGCATGAGAAGTTAATGATAATTAAGAAAAA]

[+] EMBL BI805659             [TCTCAGCCACCCAGGACGCGTGGCCAAGTTGAGACAAGTACGCCGTCACC CCATCGGCGT  CCCGCGCTCGTC GCCTCTGGACT CCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGC AAATCAAGAGCACCTAC ATG AATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCC AG TG AAGAGGAGG TTGCTAACGTTT TGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGAC AAATACTATTATT GCTGATGAGCTGCTCATGTACCTATTTTAATTCAAC ATAATGAAATATGTTTTCAGTTTCCGCTCCAGACAACTGCGTACTAC AACATCATTACATC ATGTGGGGTTCCC ATCACCTGTATTTTCTTTTATCGAATTC ATTTGAAGCCCGTTGGCATGAGAAGTTAATGATAAaaa       ]
[+] EMBL AU096158             [                                          CCGTCACCGCCATCGGCNTCGCCCGCGCTCNTCGGCCTCTGGACTGCNATAGGCGCCATCAAGGCCATCGACAGGNTTCCACTTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCNCCTACAATGAAATCACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTNCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAGCCATGCC AG TG AAGAGGAGG TTGCTAACGTTT TGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATT GCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAATAATGAAATATGTTTTCAGTTTCCGCTCCAGACAA TGCGTACTACAAACATCATTACATCAATGTGGGGTTCCCAATCACCTGTATTTTCTTTTATCGAATTCAATTTGAAG CCGTTGGCATGAGAAGTTAATGATAATTAAGAAAAA]
[+] EMBL AU096216             [                                                                                                                                                                                                                                                                                                                                               GCCAAGTTGAAAGAGGAGGTTTGCTAACGTTTCTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATTNGCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAATAATGAAATATGTTTTCAGTTTCCGCTCCAGACAACTGCGTACTACAAACATCATTACATCAATGT GGGTTCCCAATCACCTGTATTTTCTTTTATCGAATTCAATTTGAA  CCGTTGGCATGAGAAGTTAATGATAATTAAGAAAA ]




>consensus_14396#2
TCTCAGCCACCCAGGACGCGTGGCCAAGTTGAGACAAGTACGCCGTCACCCCATCGGCGT
CCCGCGCTCGTCGCCTCTGGACTCCATAGGCGCCATCAAGGCCATCGACAGGCTTCCACT
TTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGGTATACAGGGTGGTTTACATACCGGAA
CCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAATCAAGAGCACCTACATGAAT
CACCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGC
AGCAGGACTGCATCTGTCGGCAGCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGA
CTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGCAGACAAAATACTATTATT
GCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAATAATGAAATATGTTTTCAGTTT
CCGCTCCAGACAACTGCGTACTACAAACATCATTACATCAATGTGGGGTTCCCAATCACC
TGTATTTTCTTTTATCGAATTCAATTTGAAGCCGTTGGCATGAGAAGTTAATGATAATTA
AGAAAAA

consensusID : consensus_14396#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CCGGGCGCCATCAAGGCCATCGACACGGCTTCCACCTTTTGCCCGGCGTGCTTGAGCTTGTTGGAATCGGGTATACACGGGTGGTTTACATGACCGGAACCTGCATCTTCCAGCCAGACACGGGAAGCTCTGGGTGAGCAAAATCAAGAGCACCTGACAATGAAATGCACCCGGGAGCAGCAGCTAATGTTCATGACCATGTTTCGAGAAGATGTTGCTGTGAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAAGCCATGGCCAAGTGAAGAGGAGGTTGGCTGAACGTTTTGAGATTGGGTGCCCTGCCCTTATTTGCCATGCTTGATGCCCCTGGGCTGCAAAGCAAGACAAAAATGACTGATTATTGGCTGATGAGTTGCTCATGTACCTATTCTAATTCCAACCATAATGAAATATGTTTTCAGTTTCCGCTCCCACAAAAAAAAAA]

[+] EMBL BM418839             [CCGGGCGCCATCAAGGCCATCGACACGGCTTCCACCTTTTGCCCGGCGTGCTTGAGCTTGTTGGAATCGGGTATACACGGGTGGTTTACATGACCGGAACCTGCATCTTCCAGCCAGACACGGGAAGCTCTGGGTGAGCAAAATCAAGAGCACCTGACAATGAAATGCACCCGGGAGCAGCAGCTAATGTTCATGACCATGTTTCGAGAAGATGTTGCTGTGAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCAAGCCATGGCCAAGTGAAGAGGAGGTTGGCTGAACGTTTTGAGATTGGGTGCCCTGCCCTTATTTGCCATGCTTGATGCCCCTGGGCTGCAAAGCAAGACAAAAATGACTGATTATTGGCTGATGAGTTGCTCATGTACCTATTCTAATTCCAACCATAATGAAATATGTTTTCAGTTTCCGCTCCCACAAAAAAAAAA]




>consensus_14396#3
CCGGGCGCCATCAAGGCCATCGACACGGCTTCCACCTTTTGCCCGGCGTGCTTGAGCTTG
TTGGAATCGGGTATACACGGGTGGTTTACATGACCGGAACCTGCATCTTCCAGCCAGACA
CGGGAAGCTCTGGGTGAGCAAAATCAAGAGCACCTGACAATGAAATGCACCCGGGAGCAG
CAGCTAATGTTCATGACCATGTTTCGAGAAGATGTTGCTGTGAAATCAGAGAGCAGCAGG
ACTGCATCTGTCGGCAAGCCATGGCCAAGTGAAGAGGAGGTTGGCTGAACGTTTTGAGAT
TGGGTGCCCTGCCCTTATTTGCCATGCTTGATGCCCCTGGGCTGCAAAGCAAGACAAAAA
TGACTGATTATTGGCTGATGAGTTGCTCATGTACCTATTCTAATTCCAACCATAATGAAA
TATGTTTTCAGTTTCCGCTCCCACAAAAAAAAAA

consensusID : consensus_14396#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [ACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGNCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCGCCCCACCACGGTCGCCTTTGCCGTNGNCGCACCGNATCAAGTACGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGNACCGGCAGCGAGACGGAGGTGCCGGAGTCGTCAAGGAGCCAGGCGGTGGGCAAAGTTGAGNCAAGACGCGTAACGCATCGCGTNGCGCGGTCGTCGGCTTTGACTGCATAGNGCATAAGGCATNGCAGGT]

[+] EMBL OSS15793A            [ACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGNCGCGCCGCTCGTCCTCGCACCGCTGCCTCGCGCCCCACCACGGTCGCCTTTGCCGTNGNCGCACCGNATCAAGTACGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGNACCGGCAGCGAGACGGAGGTGCCGGAGTCGTCAAGGAGCCAGGCGGTGGGCAAAGTTGAGNCAAGACGCGTAACGCATCGCGTNGCGCGGTCGTCGGCTTTGACTGCATAGNGCATAAGGCATNGCAGGT]




>consensus_14396#4
ACCCGCTCGGTCACCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGNCGCGCCGCTCG
TCCTCGCACCGCTGCCTCGCGCCCCACCACGGTCGCCTTTGCCGTNGNCGCACCGNATCA
AGTACGGTCTCAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGNACCGGCAGCGA
GACGGAGGTGCCGGAGTCGTCAAGGAGCCAGGCGGTGGGCAAAGTTGAGNCAAGACGCGT
AACGCATCGCGTNGCGCGGTCGTCGGCTTTGACTGCATAGNGCATAAGGCATNGCAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      GGACAGACAAACAGATCACCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCA 60
consensus_14396#1      ------------------------------------------------------------
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      CCCCACCATGGCCGCCACCACCTGCCGCCTCGCCGCCGCGCCGCTCGTCCTCGCACCGCT 120
consensus_14396#1      ------------------------------------------------------------
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      GCCTCGCCGCCCCACCACGGTCGCCTTTGCCGTCGCCGCCACCGGCATCAAGTACGGTCT 180
consensus_14396#1      ------------------------------------------------------------
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      CAGGGCGTCGAGGGGCGTGGCGATCAGGGCGGCCGACGGCACCGGCAGCGAGACGGAGGT 240
consensus_14396#1      ------------------------------------------------------------
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      -----------TCTCAGCCACCCAGGACGCGTGGCC--AAGTTGAG-ACAAGTACGCCGT 46
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      GCCGGAGGTCGTCAAGGCAGCCCAGGACGCGTGGGCCAAAGTTGAGGACAAGTACGCCGT 300
consensus_14396#1      ------------------------------------------------------------
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      CACC-CCATCGGCGTC-CCGCGCTCGTCG-CCTCTGGACT-CCATAGGCGCC--ATCAAG 100
consensus_14396#3      -------------------------------------------CCGGGCGCC--ATCAAG 15
consensus_14396#0      CACCGCCATCGGCGTCGCCGCGCTCGTCGGCCTCTGGACTGCCATAGGCGCC--ATCAAG 358
consensus_14396#1      --------CCGATCGATCACGCGTCCACCGCCGCGCCACCCGCTCGGTCACCCCACCATG 52
consensus_14396#4      -------------------------------------ACCCGCTCGGTCACCCCACCATG 23
                                                                     * * **  * ** *

consensus_14396#2      GCCATCGACA-----GGCTTCCAC-TTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGG 154
consensus_14396#3      GCCATCGACAC----GGCTTCCACCTTTTGCCCGGCGTGCTTGAGCTTGTTGGAATCGGG 71
consensus_14396#0      GCCATCGACA-----GGCTTCCAC-TTTTGCCCGGCGTGCTTGAGCTCGTTGGAATCGGG 412
consensus_14396#1      GCCGCCACCACCTGNCGNCTCGNCGCCGNGCCGTTCGTNCTCGNACCGCTGCCTCGCCGN 112
consensus_14396#4      GCCGCCACCACCTGCCGCCTCGCCGNCGCGCCGCTCGTCCTCGCACCGCTGCCTCGC-GC 82
                       ***  *  **      *  **  *     ***   *** ** *  *   *      * * 

consensus_14396#2      TATACA-GGGTGGTTTACAT-ACCGGAACCT-CATCTTCCAGCCAGACA-GGGAAGCTCT 210
consensus_14396#3      TATACACGGGTGGTTTACATGACCGGAACCTGCATCTTCCAGCCAGACACGGGAAGCTCT 131
consensus_14396#0      TATACA-GGGTGGTTTACAT-ACCGGAACCT-CATCTTCCAGCCAGACA-GGGAAGCTCT 468
consensus_14396#1      CCCACCACGGTCGCCTTTGCCGTTGCCGCCACCGGCATCAAGTACGGTCTCAGGGCGTCG 172
consensus_14396#4      CCCACCACGGTCGCCTTTGCCGTNGNCGC-ACCGN-ATCAAGTACGGTCTCAGGGCGTCG 140
                          **   *** *  *        *   *   *    ** **   *      *    ** 

consensus_14396#2      GG-TGAGCAAA-TCAAGAGCACCTA--CATGAATCA---CCGGGAGCAGCAGCTAAT-TT 262
consensus_14396#3      GGGTGAGCAAAATCAAGAGCACCTGACAATGAAATGCACCCGGGAGCAGCAGCTAATGTT 191
consensus_14396#0      GG-TGAGCAAAATCAAGAGCACCTA-CAATGAAATC--ACCGGGAGCAGCAGCTAAT-TT 523
consensus_14396#1      AGGGGCGTGGCGATCAGGNCGGNCG-ACGGCACCGGCAGNGAGACGGAGGTGCCGGAGGT 231
consensus_14396#4      AGGGGCGTGGCGATCAGGGCGGCCG-ACGN-ACCGGCAGCGAGACGGAGGTGCCGGAG-T 197
                        *  * *        **  *           *          *  * **  **      *

consensus_14396#2      CAT-ACCAT-TTTCGAGAAGATTT--CTGT-AAATCAGAGAGCAGCAGGACTGCATCTGT 317
consensus_14396#3      CATGACCATGTTTCGAGAAGATGTTGCTGTGAAATCAGAGAGCAGCAGGACTGCATCTGT 251
consensus_14396#0      CAT-ACCAT-TTTCGAGAAGATTT--CTGT-AAATCAGAGAGCAGCAGGACTGCATCTGT 578
consensus_14396#1      CGTCAAGNC-AGCCCAGGNCGTGT--GNGCCAAAGTTNAGGACANGTA---NGAGGTTAC 285
consensus_14396#4      CGTCAAGG---AGCCAGGCGGTG-----GGCAAAGTTGAGNCAAGACG---CGTAAC--- 243
                       * * *        * **    *      *  ***    **   *        *       

consensus_14396#2      CGGCA-GCCATGCC--AGTGAAGAGGAGGTTG--CTAACGTTTTGAGACTGG---TCCCT 369
consensus_14396#3      CGGCAAGCCATGGCCAAGTGAAGAGGAGGTTGGCTGAACGTTTTGAGATTGGGTGCCCTG 311
consensus_14396#0      CGGCA-GCCATGCC--AGTGAAGAGGAGGTTG--CTAACGTTTTGAGACTGG---TCCCT 630
consensus_14396#1      CTACA--TCGCGTT---TGGCGAGTNTCNTNG-------GTCTCTGGACTGT-CATAGGC 332
consensus_14396#4      --GCA--TCGCGTN---GCGCG---GTCGTCG-------GCTTT--GACTG--CATAGNG 282
                          **   *  *       *         * *       *  *   ** **         

consensus_14396#2      CCATTATTT-CCATCTT----ATCCCCTGGCT-CAAAGCA-GACAAAA--TACT-ATTAT 419
consensus_14396#3      CCCTTATTTGCCATGCTTGATGCCCCTGGGCTGCAAAGCAAGACAAAAATGACTGATTAT 371
consensus_14396#0      CCATTATTT-CCATCTT----ATCCCCTGGCT-CAAAGCA-GACAAAA--TACT-ATTAT 680
consensus_14396#1      GTCATCAAGGCCATGGACAAGGNTTCCACTTTTGCCNGGNGTGNTTNAGCTCGTTGGGAA 392
consensus_14396#4      --CATAAGG--CATNG--CAGGT------------------------------------- 299
                           *      ***                                              

consensus_14396#2      TG-CTGATGAGCTGCTCATGTACCTATTTTAATTC-AACAATAATGAAATATGTTTTCAG 477
consensus_14396#3      TGGCTGATGAGTTGCTCATGTACCTATTCTAATTCCAACCATAATGAAATATGTTTTCAG 431
consensus_14396#0      TG-CTGATGAGCTGCTCATGTACCTATTTTAATTC-AACAATAATGAAATATGTTTTCAG 738
consensus_14396#1      TTGTGTATANANNGTGGGTTTACATACCGGAACTTCATNTNNCACNNAANCAGGGAAGTT 452
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      TTTCCGCTCCAGACAACTGCGTACTACAAACATCATTACATCAATGTGGGGTTCCCAATC 537
consensus_14396#3      TTTCCGCTCCCACAAAAAAAAAA------------------------------------- 454
consensus_14396#0      TTTCCGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 780
consensus_14396#1      TTTGTGAGNAAATCNAGAGCAACTACAATGTAATNANCGGGAGAAGAAGTAATTTCATAC 512
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ACCTGTATTTTCTTTTATCGAATTCAATTTGAAGCCGTTGGCATGAGAAGTTAATGATAA 597
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      ------------------------------------------------------------
consensus_14396#1      CATTTTNGGGAAGNTTNTTTAAAATAAGGGGCANAAGNNTTGAATTTTTAGGAAGCATGC 572
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      TTAAGAAAAA-------------------------------------------------- 607
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      ------------------------------------------------------------
consensus_14396#1      AATTGATNAGGGGTTNTAACGTTTNAGGTTGGCCCTTCATTTTTTCATTTATCCCTGGTT 632
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      ------------------------------------------------------------
consensus_14396#1      AAGAAGNAATTTTTNATTTTGTGGTNTAATGCCTNTTTATNAAATATGGAATTTTAATTC 692
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      ------------------------------------------------------------
consensus_14396#3      ------------------------------------------------------------
consensus_14396#0      ------------------------------------------------------------
consensus_14396#1      GNAAANAATTNCCNTTANNGTTGGTNCAATTTTTNCTTNTNGTNNTTNNNGNTTNAANNN 752
consensus_14396#4      ------------------------------------------------------------
                                                                                   

consensus_14396#2      --------------
consensus_14396#3      --------------
consensus_14396#0      --------------
consensus_14396#1      TGTNTNTTTTNTTG 766
consensus_14396#4      --------------