These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 993 fasta sequence [CTCCGCCGCGCCCCGGAGGAAGCGGCCCAGGAATAACGGCGCCGGCGCCGGCGTCGGTCAGCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCTCACGCCCGTCTCACCGNCGGCCGTGCAGNTGGTGGGTGGGGGCGGAGGCCCCGGCTTGCGCGTCGGACGAGCACTCAACGACGACTTGCGTGGAAGCCAGCGCAGGAGGATGGGGCGCGTCGAGCCACGTTACCTGGTCTAGGTCGGCGCGTCTCGGGCGTGGGTCCCCGACCTATACTTGTGTGGATCTGAGCTCGCTCACATCCACTGGCCCTGCCTCTCCTCCTCTGACAAGCCTCTCGTTTTACCTTCTAGGCCCTCCCCGCTCTTTATCTTCGTGGTTTCTAGCGCGCGCCTTTCCGCCGATCGGTGCGGCCCCCCCTTATCTCCCCCCCGCGCGCTCCCTTCCGTCGCTATCCCCGTCTGCTCTATTTTTTTTCCTCTGCCCCCCCCTCGCCCCCCGACGAGTGGGCGGTGGCGACACCCGTCCCCCTTATGCCTTCGCGTTACTTCTCCCCCCCTGCGCCGTGGAGCATTTTATTTTCTCCCGACTCCTCTTCTTTCTTTTTTCTCGTCCCGCTGTGGATGCTTTTGCCGCTGCACTCTCTGTCCGCTCGCCTCTCGTGCCCCCTTGCTCCGCGGGCCATGCCGGACACTCCTCCGTTCTCTGATCGGGCGGCTCATTTCGGGTCGTGCGTTGTCACCGTCTGTGGTGCGGCCGGCGCCTAACTGTTGTGTAACTCGGTACTTGCGGGTGAGGTTATAGAGAAGGAGATCGGTCGCTTAGGTTGTGTACTGGTGTGCGTTGTGGGTGAGCGGCGTGTTGCGTATTACGTTCGCGTGTCTAACGTAGCGCGGTGCGTATATGGTTGGGTGATGATGGTTTGGACATGGTGATCTGTGTGTCTGTCGTGGGTTGGCGGTATGCTTGTC] [+] EMBL BE039782 [CTCCGCCGCGCCCCGGAGGAAGCGGCCCAGGAATAACGGCGCCGGCGCCGGCGTCGGTCAGCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCTCACGCCCGTCTCACCGNCGGCCGTGCAGNTGGTGGGTGGGGGCGGAGGCCCCGGCTTGCGCGTCGGACGAGCACTCAACGACGACTTGCGTGGAAGCCAGCGCAGGAGGATGGGGCGCGTCGAGCCACGTTACCTGGTCTAGGTCGGCGCGTCTCGGGCGTGGGTCCCCGACCTATACTTGTGTGGATCTGAGCTCGCTCACATCCACTGGCCCTGCCTCTCCTCCTCTGACAAGCCTCTCGTTTTACCTTCTAGGCCCTCCCCGCTCTTTATCTTCGTGGTTTCTAGCGCGCGCCTTTCCGCCGATCGGTGCGGCCCCCCCTTATCTCCCCCCCGCGCGCTCCCTTCCGTCGCTATCCCCGTCTGCTCTATTTTTTTTCCTCTGCCCCCCCCTCGCCCCCCGACGAGTGGGCGGTGGCGACACCCGTCCCCCTTATGCCTTCGCGTTACTTCTCCCCCCCTGCGCCGTGGAGCATTTTATTTTCTCCCGACTCCTCTTCTTTCTTTTTTCTCGTCCCGCTGTGGATGCTTTTGCCGCTGCACTCTCTGTCCGCTCGCCTCTCGTGCCCCCTTGCTCCGCGGGCCATGCCGGACACTCCTCCGTTCTCTGATCGGGCGGCTCATTTCGGGTCGTGCGTTGTCACCGTCTGTGGTGCGGCCGGCGCCTAACTGTTGTGTAACTCGGTACTTGCGGGTGAGGTTATAGAGAAGGAGATCGGTCGCTTAGGTTGTGTACTGGTGTGCGTTGTGGGTGAGCGGCGTGTTGCGTATTACGTTCGCGTGTCTAACGTAGCGCGGTGCGTATATGGTTGGGTGATGATGGTTTGGACATGGTGATCTGTGTGTCTGTCGTGGGTTGGCGGTATGCTTGTC] consensusID : consensus_144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CGGCGCCGGCGCCGGCGTCGGTCAGCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCTCACGCCCGTCTCACCGCCGCCGTGCAGCTGGTGGGTGGGGCGCGCGGCGGCGGCGCGTCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCGACGGGGATGGCGCCGGGGCGCCCACAGCTGCTGAACCTCTTCAGCTGATCCTGATCGATCGATCCAGAGCTGTACGTACGTAATTGTAAGCTAATTAATTAAGCTTAATTTGTAGTGGCAACTGTGCAGAGAGGGTGAGGGTTCAATCGATCGATCACCAGGTCGGCTGTGTGGTGATTAACTTATATTAGTTGCATCTGTGTTGATTAAAAAA] [+] EMBL BM421201 [CGGCGCCGGCGCCGGCGTCGGTCAGCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCTCACGCCCGTCTCACCGCCGCCGTGCAGCTGGTGGGTGGGGCGCGCGGCGGCGGCGCGTCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCGACGGGGATGGCGCCGGGGCGCCCACAGCTGCTGAACCTCTTCAGCTGATCCTGATCGATCGATCCAGAGCTGTACGTACGTAATTGTAAGCTAATTAATTAAGCTTAATTTGTAGTGGCAACTGTGCAGAGAGGGTGAGGGTTCAATCGATCGATCACCAGGTCGGCTGTGTGGTGATTAACTTATATTAGTTGCATCTGTGTTGATTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_144#0 CTCCGCCGCGCCCCGGAGGAAGCGGCCCAGGAATAACGGCGCCGGCGCCGGCGTCGGTCA 60 consensus_144#1 ------------------------------------CGGCGCCGGCGCCGGCGTCGGTCA 24 ************************ consensus_144#0 GCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCT 120 consensus_144#1 GCAGCAGCTGCCGCACGCGGTGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCT 84 ************************************************************ consensus_144#0 CACGCCCGTCTCACCGNCGGCCGTGCAGNTGGTGGGTGGGGGCGGAGGCCCCGGCTTGCG 180 consensus_144#1 CACGCCCGTCTCACCGCCG-CCGTGCAGCTGGTGGGTGGGGCGCGCGGCGGCGG----CG 139 **************** ** ******** ************ * *** *** ** consensus_144#0 CGTCGGACGAGCACTCAACGACGACTTGCGTGGAAGCCAGCGCAGGAGGATGGGGCGCGT 240 consensus_144#1 CGTCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCG-ACGGGGATGGCGCCGGG 198 **************** ******** **** *********** * * ****** ** * consensus_144#0 CGAGCCACGTTACCTGGTCTAGGTCGGCGCGTCTCGGGCGTGGGTCCCCGACCTATACTT 300 consensus_144#1 GCGCCCACAGCTGCTGAACCTCTTCAGCTGATCCTGATCGATCGATCCAGAGCTGTACGT 258 **** *** * ** ** ** * ** * ** ** ** *** * consensus_144#0 GTGTGGATCTGAGCTCGCTCACATCCACTGGCCCT--GCCTCTCCTCCTCTGACAAGCCT 358 consensus_144#1 ACGTAATTGTAAGCTAATTAATTAAGCTTAATTTGTAGTGGCAACTGTGCAGAGAGGGTG 318 ** * * **** * * * * * ** * ** * * consensus_144#0 CTCGTTTTACCTTCTAGGCCCTCCCCGCTCTTTATCTTCGT-GGTTTCTAGCGCGCGCCT 417 consensus_144#1 AGGGTTCAATCGATCGATCACCAGGTCGGCTGTGTGGTGATTAACTTATATTAGTTGCAT 378 *** * * * * ** * * * * ** ** ** * consensus_144#0 TTCCGCCGATCGGTGCGGCCCCCCCTTATCTCCCCCCCGCGCGCTCCCTTCCGTCGCTAT 477 consensus_144#1 CTGTGTTGATTAAAAAA------------------------------------------- 395 * * *** consensus_144#0 CCCCGTCTGCTCTATTTTTTTTCCTCTGCCCCCCCCTCGCCCCCCGACGAGTGGGCGGTG 537 consensus_144#1 ------------------------------------------------------------ consensus_144#0 GCGACACCCGTCCCCCTTATGCCTTCGCGTTACTTCTCCCCCCCTGCGCCGTGGAGCATT 597 consensus_144#1 ------------------------------------------------------------ consensus_144#0 TTATTTTCTCCCGACTCCTCTTCTTTCTTTTTTCTCGTCCCGCTGTGGATGCTTTTGCCG 657 consensus_144#1 ------------------------------------------------------------ consensus_144#0 CTGCACTCTCTGTCCGCTCGCCTCTCGTGCCCCCTTGCTCCGCGGGCCATGCCGGACACT 717 consensus_144#1 ------------------------------------------------------------ consensus_144#0 CCTCCGTTCTCTGATCGGGCGGCTCATTTCGGGTCGTGCGTTGTCACCGTCTGTGGTGCG 777 consensus_144#1 ------------------------------------------------------------ consensus_144#0 GCCGGCGCCTAACTGTTGTGTAACTCGGTACTTGCGGGTGAGGTTATAGAGAAGGAGATC 837 consensus_144#1 ------------------------------------------------------------ consensus_144#0 GGTCGCTTAGGTTGTGTACTGGTGTGCGTTGTGGGTGAGCGGCGTGTTGCGTATTACGTT 897 consensus_144#1 ------------------------------------------------------------ consensus_144#0 CGCGTGTCTAACGTAGCGCGGTGCGTATATGGTTGGGTGATGATGGTTTGGACATGGTGA 957 consensus_144#1 ------------------------------------------------------------ consensus_144#0 TCTGTGTGTCTGTCGTGGGTTGGCGGTATGCTTGTC 993 consensus_144#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||