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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1103 fasta sequence
[TATAGCTGCTGCCACTCAACTGTGCAGGACTCATAGCTCCCTGCTACATATACCGGCCGGTCGGACCCCCTCATCTTGCCGGCCTCATCATCGTCACCGATCGATCCCGGCCATTCCACGGTCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGGGCGTGTGGGTGTTCAAGGACGGCATCGTGCGGCGCGTGGAGAACCCCGGCAGCGAGGAATCGTCGTCGGCGGGGGACGGCGGCGGAGGCGGGCGGCGGAAGGTGCTGGTGCACGTGCCGAGCGGGGAGGTGGTGGCGTCATACGAGGTGCTGGAGCGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCACCGACCCGTGCCTCCTGCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCTGTCCCCCGCGACTTCTCCAAGTTCAAGCTCGTCCACATGTACGACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCCCCGCCGTCTCACCGGCGACCTAGCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGC]
[+] EMBL AK065150 [TATAGCTGCTGCCACTCAACTGTGCAGGACTCATAGCTCCCTGCTACATATACCGGCCGGTCGGACCCCCTCATCTTGCCGGCCTCATCATCGTCACCGATCGATCCCGGCCATTCCACGGTCGATCGATCATCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGGGCGTGTGGGTGTTCAAGGACGGCATCGTGCGGCGCGTGGAGAACCCCGGCAGCGAGGAATCGTCGTCGGCGGGGGACGGCGGCGGAGGCGGGCGGCGGAAGGTGCTGGTGCACGTGCCGAGCGGGGAGGTGGTGGCGTCATACGAGGTGCTGGAGCGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCACCGACCCGTGCCTCCTGCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCTGTCCCCCGCGACTTCTCCAAGTTCAAGCTCGTCCACATGTACGACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCCCCGCCGTCTCACCGGCGACCTAGCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTAC ]
[+] EMBL AK104536 [ TGCTACATATACCGGCCGGTCGGACCCCCTCATCTTGCCGGCCTCATCATCGTCACCGATCGATCCCGGCCATTCCACGGTCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGGGCGTGTGGGTGTTCAAGGACGGCATCGTGCGGCGCGTGGAGAACCCCGGCAGCGAGGAATCGTCGTCGGCGGGGGACGGCGGCGGAGGCGGGCGGCGGAAGGTGCTGGTGCACGTGCCGAGCGGGGAGGTGGTGGCGTCATACGAGGTGCTGGAGCGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCACCGACCCGTGCCTCCTGCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCTGTCCCCCGCGACTTCTCCAAGTTCAAGCTCGTCCACATGTACGACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCCCCGCCGTCTCACCGGCGACCTAGCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGC]
[+] EMBL AK060911 [ TGCTACATATACCGGCCGGTCGGACCCCCTCATCTTGCCGGCCTCATCATCGTCACCGATCGATCCCGGCCATTCCACGGTCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGGGCGTGTGGGTGTTCAAGGACGGCATCGTGCGGCGCGTGGAGAACCCCGGCAGCGAGGAATCGTCGTCGGCGGGGGACGGCGGCGGAGGCGGGCGGCGGAAGGTGCTGGTGCACGTGCCGAGCGGGGAGGTGGTGGCGTCATACGAGGTGCTGGAGCGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCACCGACCCGTGCCTCCTGCAGTTCCACCAGCGCTCCACCGTGCACCTCATCTCTGTCCCCCGCGACTTCTCCAAGTTCAAGCTCGTCCACATGTACGACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCCCCGCCGTCTCACCGGCGACCTAGCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGC]
[+] EMBL CA999569 [ ATGTACGACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCCCCGCCGACTCACCGGCGACCTACCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACGTGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGCATGCGTGTGATCGATCAAGGATCGATGTACACACTGATGATCATGATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTG ]
consensusID : consensus_14406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 900 fasta sequence
[ACCATTGCTGAGCTCCAAAGCTTCTAGCTGTGATCAAGCAAAGAAGAATTGAAAAAAAACATATATATATTATATATATGGCAGGGGTGTGGGTGTTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC-TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGTGACAATAAATAATTAGTTTTGTCACAAAGGAGTAATAGTATGTTGTTCGCTGTATTGATTAAAAAACAAAAAAACAAAA]
[+] EMBL AK120187 [ACCATTGCTGAGCTCCAAAGCTTCTAGCTGTGATCAAGCAAAGAAGAATTGAAAAAAAACATATATATATTATATATATGGCAGGGGTGTGGGTGTTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGTGACAATAAATAAT ]
[-] EMBL CB683547 [ GTTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGAGGGAATAAATAATTA ]
[-] EMBL CB685231 [ TTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTTTCGGTGGTGGAGGTGGGGGAGGGAAAGTGCTTTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTCGTGGTTTGGACCCATTGCTTGTATGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGGGACAATAAATAATTAGTTT ]
[-] EMBL CB681128 [ GGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAAAGGCAATAAATAATTAGTTTTGT ]
[-] EMBL CB679285 [ CAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTTTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATTTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCCTTCCTTGACGTATTCTGTGGCACGAATCAATCATCCACGCGTTATGCAGTGACAATAAATAATTAGTTTTGTCTCAAAGGAGTAATAGTATGTTGTTCG ]
[-] EMBL CB683896 [ AGCGAGGCGCCGTCGAGAGGGCCCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGC TTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCTTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGTGACTTCTCCCGCTTCAAGCTAGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATAGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTGGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATGGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATCCGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATAGGGTATGCAGTGACAAT ]
[+] EMBL CB682705 [ GTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGTGACAATAAATAATTAGTTTTGTCACAATTAATTAATAGTATGTTGTTTGCTGTATTGATTAAAAAACAAAAAAACAAAA]
[+] EMBL CB680161 [ CCCGCCTCTAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATCGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGCTGGTTTAATTGCAAGTGAGTGTTTAGTTATTTAATTATACGAGAGCCATGAGCACGTGTGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTTTGGAGCCATTGCTTGACTGATTCCGTGGCACGAATCAATCATCCATGCGTTATGCAGTGACAATAAATAATTAGTTTTGTCNCA ]
consensusID : consensus_14406#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence
[GTGTTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGCTTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATGGATGTTTATGCTTTGATCATCATCGATATGACCTTCCTAGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATGGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGGGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGACGTTCCCTCCCCCACCTCCACCACAGACACTCGCGCCCTCTCGACGGCGCCTCGCTATCTGCCCTCCTCACCATCCCATCGTCAAACACCCACACCCCTGCCATATATATAATATATATATGTTTTTTTTCAATTCTTCTTTGCTTGATCA-GGGCTA]
[-] EMBL CB681127 [GTGTTTGAGGATGGGATGGTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGCTTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATCGATGTTTATGCTTTGATCATCATCGATATGACCTTCCTCGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATGGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGGGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAG ]
[-] EMBL CB683131 [ GTGAGGAGGGCAGATAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGCTTGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCGGGAGCTCGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTTGTCCACATGTACGACGTCGTCGTCAAGACCCGCAACGTCTTGGAGGTCCGTGACGCCGCCACCACTGCTTCCCCGCCATGATCGCATGGATGTTTATGCTTTGATCATCATCGATATGACCTTCCTAGACTCCGGGCTCAGGCCAGACACGCCGCCATGGCGCCTACAATGGTATGGGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAATGTATGAGTATATTCGTACGTGCGCGATCGATCGGGTGTGTGTGATATATATTAAAATAAGCGTGGACGTTCCCTCCCCCACCTCCACCACAGACACTCGCGCCCTCTCGACGGCGCCTCGCTATCTGCCCTCCTCACCATCCCATCGTCAAACACCCACACCCCTGCCATATATATAATATATATATGTTTTTTTTCAATTCTTCTTTGCTTGATCA GGGCTA]
[-] EMBL CB683504 [ CGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGATGCGGGAGCTAGGGTGGGAGAGGTACCTCAACGACCCGTGCCTCTTCCAGTTCCACCAGCGCTCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCTTCAAGCTAGTCCACATGTATGAGGTCGTCGTCAAGACCTGCAACGTATTCGAGGTCCGTGACGCCGCCATCAGTGGTTCCCGGCCATGATCGCATGGATGTTTATGCTTTGATCATCATCGATATGACCTTCCTGGACTCCGGGCTCAGGCCAGACAAGCGGCCATGGCGCCTACAATGGTATGTGTGTATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGTACAGGTATAACGTATGCGTATATACGTACGTGTGCGATCGATCGGGTGTGTGTGATATATATTAAAATA TG CG TCCCCCACCTCCACCACAGACAC CGCGCCCTCTCGACGGCGCCTCGATATATGCCCTCCTCACCATCCCATCCTCAAACACCCACACCCCTGCCATATATATAATATATATATGTTTTTTTTCAATTCTTCTTTGCTTGATCACAGGCTA]
consensusID : consensus_14406#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence
[TCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGCACGACATTTTAAATATTGTAATCTGTACACATAATATTGATCGGTCTCTCTTTCCCTGTGGCCAATATTATGTGGGGCTTAATTATACAATTACAAGCACCATCAACCTTTAAAGA]
[-] EMBL CB683469 [TCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACATACATACATGGCGAGATCCATCCATCCATCGATCAGACGACAGCTTATAGCTACAGCAGTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATGTATATATATACTGGTATGCGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAGCATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGGCGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCTTTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATACTTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAACATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACTCTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTATGTACCAGTTTTTTCACATATGATTTGCACGACATTTTAAATATTGTAATCTGTACACATAATATTGATCGGTCTCTCTTTCCCTGTGGCCAATATTATGTGGGGCTTAATTATACAATTACAAGCACCATCAACCTTTAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14406#0 TATAGCTGCTGCCACTCAACTGTGCAGGACTCATAGCTCCCTGCTACATATACCGGCCGG 60
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 ------------------------------------------------------------
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 TCGGACCCCCTCATCTTGCCGGCCTCATCATCGTCACCGATCGATCCCGGCCATTCCACG 120
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 ------------------------------------------------------------
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 GTCGATCGATCGTCTCCGGCCGGCCGGTCGCCGGTGGGAATTGAAGCAGCTAGCTGACAT 180
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 ------------------------------------------------------------
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 ACATACATGGCGGGCGTGTGGGTGTTCAAGGACGGCATCGTGCGGCGCGTGGAGAACCCC 240
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 ------------------------------------------------------------
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 GGCAGCGAGGAATCGTCGTCGGCGGGGGACGGCGGCGGAGGCGGGCGGCGGAAGGTGCTG 300
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 --------------------------------------------------------ACCA 4
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 GTGCACGTGCCGAGCGGGGAGGTGGTGGCGTCATACGAGGTGCTGGAGCGGCGGCTGCGG 360
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 TTGCTGAGCTCCAAAGCTTCTAGCTGTGATCAAGCAAAGAAGAATTGAAAAAAAACATAT 64
consensus_14406#2 ------------------------------------------------------------
consensus_14406#0 GAGCTCGGGTGGGAGAGGTACCTCACCGACCCGTGCCTCCTGCAGTTCCACCAGCGCTCC 420
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 ATATATTATATATATGGCAGGGGTGTGGGTGTTTGAGGATGGGATGGTGAGGAGGGCAGA 124
consensus_14406#2 ----------------------------GTGTTTGAGGATGGGATGGTGAGGAGGGCAGA 32
consensus_14406#0 ACCGTGCACCTCATCTCTGTCCCCCGCGACTTCTCCAAGTTCAAGCTCGTCCACATGTAC 480
consensus_14406#3 ------------------------------------------------------------
consensus_14406#1 TAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGCT 184
consensus_14406#2 TAGCGAGGCGCCGTCGAGAGGGCGCGGTGTCGGTGGTGGAGGTGGGGGAGGGAAGGTGCT 92
consensus_14406#0 GACATCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGCGACGCCGCTGCCC--CCGCCG 538
consensus_14406#3 ----------TCGA---TCG-ATCGTCTCCGGCCGGCCGGTCGCCGGTGGGA--ATTGAA 44
consensus_14406#1 TGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCG 244
consensus_14406#2 TGTGCACGTGCCGAGCAGCGAGGTGGTGACGAGCTACGAGGTTCTGGAGAGGCGGCTGCG 152
* * ** * ** * * * * *
consensus_14406#0 TCTCAC-CGGCGACCTAGCTGCTGATCCGAGATCCATCCATCCATCGATCAGACGACAGC 597
consensus_14406#3 GCAGCT-AGCTGACATACATACATGGC-GAGATCCATCCATCCATCGATCAGACGACAGC 102
consensus_14406#1 GGAGCTCGGGTGGGAGAGGTACCT--CAACGACCCGTGCCTCCTCCAGTTCCACCAGCGC 302
consensus_14406#2 GGAGCTCGGGTGGGAGAGGTACCT--CAACGACCCGTGCCTCCTCCAGTTCCACCAGCGC 210
* * * * * * ** ** * * *** * * ** * **
consensus_14406#0 TTATAGCTACAGCA-GTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATG 656
consensus_14406#3 TTATAGCTACAGCA-GTCCACATGAGCTTGCCTGCCTGCTATTATAAGAGTGTAAGTATG 161
consensus_14406#1 TCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATG 362
consensus_14406#2 TCCACCGTCCACCTCATCTCCGTGCCCCGCGACTTCTCCCGCCTCAAGCTCGTCCACATG 270
* * ** * ** * ** * ** * *** ** ***
consensus_14406#0 TATATATATACTGGTATG-CGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAG 715
consensus_14406#3 TATATATATACTGGTATG-CGTGTGATCGATCAAGGATCGATGTACACACAAATGATCAG 220
consensus_14406#1 TACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTG-ACGCCGCCACCACTGC 421
consensus_14406#2 TACGACGTCGTCGTCAAGACCCGCAACGTCTTCGAGGTCCGTG-ACGCCGCCACCACTGC 329
** * * * * * * * * ** ** ** * * *
consensus_14406#0 CATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGG 775
consensus_14406#3 CATGCACAGATCACTAGATCGAGATCTATAGCTCGATCGATTTGGGGTTTCTCCTGCCGG 280
consensus_14406#1 TTCCCCGCCATGATCGCATCGATGTCTATGCTTTGATC-ATCATCGATATGACCTTCCTC 480
consensus_14406#2 TTCCCCGCCATGATCGCATGGATGTTTATGCTTTGATC-ATCATCGATATGACCTTCCTA 388
* ** * ** ** * *** * **** ** * * * *** **
consensus_14406#0 CGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCT 835
consensus_14406#3 CGTTGCAGCTTTTGGATTAGATGTTGCGCCGGTGAGGACATTGCTATAGGTTAATTGGCT 340
consensus_14406#1 GACTCCGGGCTC-AGGCCAGA---CACGCCGCCATGGCGCCTACAATCG--TATGTGTGT 534
consensus_14406#2 GACTCCGGGCTC-AGGCCAGA---CACGCCGCCATGGCGCCTACAATGG--TATGTGTGT 442
* * * * * *** ***** ** * * ** * ** ** *
consensus_14406#0 TTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATAC 895
consensus_14406#3 TTTGGGTATATTTCTGCATAAATAATGCATCAATAGAGAGCACAACATGTGTATGCATAC 400
consensus_14406#1 ATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGT 594
consensus_14406#2 ATTGTATGAATCTCAATTCAGGTAATGAATGATTGTATATCATATGATTTGTAATTCTGT 502
*** * ** ** * ***** ** * * * * ** * ** **** *
consensus_14406#0 TTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAAC 955
consensus_14406#3 TTATATTTATATGTACACATGCATACATATATAAGTACATACATAGGGGCCGGGGGCAAC 460
consensus_14406#1 ACAGGTATA-ACGTATGCGTATATACGTACGTGTGCG-ATCGATCGGG--TGTGTGTGAT 650
consensus_14406#2 ACAGGTATA-ACGTATGGGTATATACGTACGTGTGCG-ATCGATCGGG--TGTGTGTGAT 558
* * ** * *** * **** ** * * ** ** *** * * * *
consensus_14406#0 ATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACT 1015
consensus_14406#3 ATGCAGGTTGCAGAGATTCTGCCAGAGATCAAGCAGAAAGGGGATCGCCGATGCCCTACT 520
consensus_14406#1 ATATA--TTAAAATAAGCGTGGCTG--GTTTAATTGCAAGTGAGTGTTTAGTTATTTAAT 706
consensus_14406#2 ATATA--TTAAAATAAGCGTGG---------------------ACGTTCCCTCCCCCACC 595
** * ** * * ** * *
consensus_14406#0 CTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTA 1075
consensus_14406#3 CTCAACCGTACCTTTTTACTGTTTAATTTGGAATAATTTGGATTGTCTCAATACAAATTA 580
consensus_14406#1 -TATACGAGAGCCATGAGCACGTG--TGTAGCTAGCTTTGGAGTCTTGTACTTTGTGGTT 763
consensus_14406#2 -TCCACCACAGACACTCGCGCCCT--CTCGACGGCGCCTCGCTATCTGCCCTCCTCACCA 652
* ** * * * * *
consensus_14406#0 TGTACCAGTTTTTTCACATATGATTTGC-------------------------------- 1103
consensus_14406#3 TGTACCAGTTTTTTCACATATGATTTGCACGACATTTTAAATATTGTAATCTGTACACAT 640
consensus_14406#1 TGGAGCCATTGCTTGACTGAT--TCCGTGGCACGAATCAATCATCCATGCGTTATGCAGT 821
consensus_14406#2 TCCCATCGTCAAACACCCACA--CCCCTGCCATATATATAATATATATATGTTTTTTTTC 710
* * *
consensus_14406#0 ------------------------------------------------------------
consensus_14406#3 AATATTGATCGGTCTCTCTTTCCCTGTGGCCAATATTATGTGGGGCTTAATTATACAATT 700
consensus_14406#1 GACAATAAATAATTAGTTTTGTCACAAAGGAGTAATAGTATGTTGTTCGCTGTATTGATT 881
consensus_14406#2 AATTCTTCTTTGCTTGATCAGGGCTA---------------------------------- 736
consensus_14406#0 ------------------------
consensus_14406#3 ACAAGCACCATCAACCTTTAAAGA 724
consensus_14406#1 AAAAAACAAAAAAACAAAA----- 900
consensus_14406#2 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||