Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14421 cluster # 14421       Sequences # 16       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14421#0 length = 1269 sequences # 10  
consensus_14421#1 length = 834 sequences # 6  

consensusID : consensus_14421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1269
fasta sequence
                              [CAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCCCATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTCCGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCG-AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTT-TTTTTC-GGTGATAATCCAA-AACTTCACTTGTGGCCCGAGAAAAAAAAAGTAATACAG]

[+] EMBL AK105901             [CAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCCCATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTCCGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCC   AGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTT TT                                                         ]
[+] EMBL AK070743             [      CGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCCCATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTCCGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTT TTT                                                        ]
[+] EMBL CB685404             [                     TCCT  TTCACACCCTCATCCTCCTCCTCCTCGCTCGCCCATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTCCGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGCGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB662562             [                                                     GCTCGCCCATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTCCGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGNAGCATGGAGAGGTGGTTAACGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI305523             [                                                                                                                             ACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTTCTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGCCTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGCCGATGAGGGTTCCC   AGGAGGAGGAGGAGGTGGTGGTCGAGGAGCAGGCGGAGGCGGAGGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGCGGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTTCTGCTTTCAGGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC455               [                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCGGCNCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCG CANGCTCTTCGA NAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGA  CGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCAATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTG CATGGCAAGTGGATGACTCTAGGCTGCT CAATTGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB634049             [                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGATTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTATTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGA                                                                             ]
[-] EMBL CB662563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTTTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATTTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGTTATTTCTGCCCTTGATGGCCAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGCCCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCCCGTTTTAACAAGAATGTTAAAGTGTTATTCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGGGTTAGCTTCCTGATTTAGAGTCCTCCCGTCCTTTTTATGTGTGTTCCAAGGTGATGTTATGTTAAATTATTGTCAAAAATATGAGTTCAACTTTCCAATTGGGATATTTATAATGATGATGTCCCTAGTATTT TTTTTCAGGGGATAATCCAA AACTTCACTTGTGGCCCGAGAAAAAAAAAGTAATACAG]
[-] EMBL CB634050             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCAGAGCCGTGGATTTGGATTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGGCTTTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTTTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTTTACGATAGAGAATTTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTATTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATGGGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTT TTTTTC CGTGATAATCCAAGAAGTTCACTT                            ]
[+] EMBL BU673576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gcgctCGGAAGGCTTCTGAACGTAAACA GGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCG AGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTATTTATGTGTCTTCCAAGCTGATGTTATGTTCAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATACTGATGATGTACTTAGTATTTATATATC AGTGATAATCa                                         ]


>consensus_14421#0 CAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCC CATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTC CGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTT CTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGC CTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGC CGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGA GGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGC GGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAG CGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTA CAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGA AGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGT AAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGC TTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATT GTTCAGCGAGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCG TTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTC TGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCG ACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAA GAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCG TTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATG TTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATG TCCTTAGTATTTTTTTTCGGTGATAATCCAAAACTTCACTTGTGGCCCGAGAAAAAAAAA GTAATACAG



consensusID : consensus_14421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 834
fasta sequence
                              [ACAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAG-CCGA-CAAGG-CCATTGAGA-TGCTTAA-CCGCTATGATAT-CAACGG-AAGGCTTCTGAACGTAAACAGGGCGGCT-CCAAGGGGCTCTCGTGTGGAGAGACCT-CCAAGGCAGTTTGCTCCTGCTTT-CAGGGCTTATGTTGGCAACCTG-CCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAG-CATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGC-TCGATGATGCTATTTCTG-CCCTTGATGGACAGGAATTGGATGGCCG-CCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT-CCATATGGCGTTGG-GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA-GTGTTATGCGTTAAGGC-GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT]

[+] EMBL AK101214             [ACAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAG CCGA CAAGG CCATTGAGA TGCTTAA CCGCTATGATAT CAACGG AAGGCTTCTGAACGTAAACAGGGCGGCT CCAAGGGGCTCTCGTGTGGAGAGACCT CCAAGGCAGTTTGCTCCTGCTTT CAGGGCTTATGTTGGCAACCTG CCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAG CATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGC TCGATGATGCTATTTCTG CCCTTGATGGACAGGAATTGGATGGCCG CCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT CCATATGGCGTTGG GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA GTGTTATGCGTTAAGGC GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT]
[-] EMBL CB685405             [                                                                                                                                                      GGTCATTTACAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAG CCGA CAAGG CCATTGAGA TGCTTAA CCGCTATGATAT CAACGG AAGGCTTCTGAACGTAAACAGGGCGGCT CCAAGGGGCTCTCGTGTGGAGAGACCT CCAAGGCAGTTTGCTCCTGCTTT CAGGGCTTATGTTGGCAACCTG CCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAG CATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGC TCGATGATGCTATTTCTG CCCTTGATGGACAGGAATTGGATGGCCG CCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT CCATATGGCGTTGG GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA GTGTTATGCGTTAAGGC GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGAAAGTTATAATGATGATGTCCTTA         ]
[+] EMBL C99211               [                                                                                                                                                                                                                         GAAGCCCCANCAAGGCCCATTGAGATTGCTTAACCCGCTTTGATATCCAACGGAAAGGCTTCTGAACGTAANCAGGNCGGCTCCCAAGGGGNTCTCGTGTGGAGAGACCTCCCAAGGCAGTTTGCCCCTGCTTTCCAGGGCTTATGTTGGCAACCTGCCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAG CATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGC TCGATGATGCTATTTCTGCCCCTTGATGGACAGGAATTGGATGGCCGTCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCCATATGGCGTTGG GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA GTGTTATGCGTTAAGGC GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT]
[+] EMBL OS1321869            [                                                                                                                                                                                                                                                                                   CTTCTGAACGTAAACAGGGCGGCT CCAAGGGGCTCTCGTGTGGAGAGACCT CCAAGGCAGTTTGCTCCTGCTTT CAGGGCTTATGTTGGCAACCTG CCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAG CATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGC TCGATGATGCTATTTCTG CCCTTGATGGACAGGAATTGGATGGCCN TCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGTTTTTGATT NCATATGGCGTTGGNGGAGCATGTCTGCACGGTTGAACAAGAATGNTAAAGGGGTTATGCGTTAAGGCGGGAAGTTGATtgntt                                                                                                                                                         ]
[+] EMBL AU161902             [                                                                                                                                                                                                                                                                                                                                                                                                              GCTGCTGCAAATTTTCA CGAGCCAT GAGANGTGGTTAACGCNTCCGTTGTCCACGATAGAGAATCT GGCGTCNNCGGGGATTGGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTTCGATGATGCTATTTCTG CCCTTGATGGACAGGAATTGGATGGCCG CCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT CCATATGGCGTTGG GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA GTGTTATGCGTTAAGGC GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT]
[+] EMBL CB682832             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GATGCCCG CCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT CCATATGGCGTTGG GGAGCATGTCTGCACGTTTGAACAAGAATGCTAAA GTGTTATGCGTTAAGGC GGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT]


>consensus_14421#1 ACAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGC CAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAGCGAGGGCCTCGCCCAGCTCTT CGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTACAACAGAGAGACAGGGCAGAG CCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGAAGCCGACAAGGCCATTGAGAT GCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGTAAACAGGGCGGCTCCAAGGGG CTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAA CCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGTTCAGCGAGCATGGAGAGGT GGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGT TTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATT GGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATT CCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGAATGCTAAAGTGTTATGCGT TAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTC CTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATAT GAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATGTCCTTAGTATTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14421#0      CAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTCATCCTCCTCCTCCTCGCTCGCC 60
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      CATGGCCATGGCCACCACCTCCGTCACCTCGCTCGCGATGGCCATGGCCGCGGCCGCCTC 120
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      CGCCGACGCCACCCAGGCCCCGCACAAGCTCTCCGCCCTCCCCTTCCACCACCTCCTCTT 180
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      CTCCCGCGCGCCGCCCCTCCTCCGCGCCTCCCGCCGCCTCCCCCTCGCGCCCCTCGTCGC 240
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      CTCCTCCGACGCCGCCGCCGCCGCCGAGGCCGGCGTCGAATGGAGCGAGACGGAGGAGGC 300
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      CGATGAGGGTTCCCAGGAGGAGGAGGAGGAGGAGGTGGTCGAGGAGCAGGCGGAGGCGGA 360
consensus_14421#1      ------------------------------------------------------------
                                                                                   

consensus_14421#0      GGAGGAGGTGGTGGCCTCCGTGGAGGAGGAGGAGGAGGAAGCGGTGGAGGAGGAGTTCGC 420
consensus_14421#1      ---------------------ACAGTAGCGCTAGCTTATCCCCTCCTACTCCCCCCCCTC 39
                                              ** **    **       *     *         * *

consensus_14421#0      GGCGGAGCCCCCCGAGGAGGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAG 480
consensus_14421#1      ATCCTCCTCCTCCTCGCTCGCCAAGGTGTACGTCGGTAACCTGCCGTACGACGTCGACAG 99
                         *     ** **  *   *****************************************

consensus_14421#0      CGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTA 540
consensus_14421#1      CGAGGGCCTCGCCCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCGCCGAGGTCATTTA 159
                       ************************************************************

consensus_14421#0      CAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGA 600
consensus_14421#1      CAACAGAGAGACAGGGCAGAGCCGTGGATTTGGGTTCGTTACCATGAGTACGATTGAGGA 219
                       ************************************************************

consensus_14421#0      AGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGT 660
consensus_14421#1      AGCCGACAAGGCCATTGAGATGCTTAACCGCTATGATATCAACGGAAGGCTTCTGAACGT 279
                       ************************************************************

consensus_14421#0      AAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGC 720
consensus_14421#1      AAACAGGGCGGCTCCAAGGGGCTCTCGTGTGGAGAGACCTCCAAGGCAGTTTGCTCCTGC 339
                       ************************************************************

consensus_14421#0      TTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATT 780
consensus_14421#1      TTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATT 399
                       ************************************************************

consensus_14421#0      GTTCAGCGAGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCG 840
consensus_14421#1      GTTCAGCGAGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCG 459
                       ************************************************************

consensus_14421#0      TTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTC 900
consensus_14421#1      TTCTCGGGGATTTGGTTTTGTTTCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTC 519
                       ************************************************************

consensus_14421#0      TGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCG 960
consensus_14421#1      TGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGTGAATGTGGCAGCTGAGCG 579
                       ************************************************************

consensus_14421#0      ACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAA 1020
consensus_14421#1      ACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAA 639
                       ************************************************************

consensus_14421#0      GAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCG 1080
consensus_14421#1      GAATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCG 699
                       ************************************************************

consensus_14421#0      TTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATG 1140
consensus_14421#1      TTAGCTTCCTGATTTTGAGTCCTCCCGTCCTTTTTATGTGTCTTCCAAGCTGATGTTATG 759
                       ************************************************************

consensus_14421#0      TTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATG 1200
consensus_14421#1      TTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGGATATTTATAATGATGATG 819
                       ************************************************************

consensus_14421#0      TCCTTAGTATTTTTTTTCGGTGATAATCCAAAACTTCACTTGTGGCCCGAGAAAAAAAAA 1260
consensus_14421#1      TCCTTAGTATTTTTT--------------------------------------------- 834
                       ***************                                             

consensus_14421#0      GTAATACAG 1269
consensus_14421#1      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)