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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 986 fasta sequence
[GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT-GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCG-CCGCGAGTAC-ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC-AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG-CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA-----AAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF278979 [GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ]
[+] EMBL AK068060 [ TCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ]
[+] EMBL C26891 [ CCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATNCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAG CGGCGNCTGCGCTCAGCTGGNATGGCGTCGAGTNGAGATCCATCGNCAGTCGTCGTGCCTAGGAACTTCAGACTTCTAGAAGAGCTTTAGAGAGNNGAGAAGTGCATCGGTGATGGATCANTAAGCTATTGAATGGGATCATNCAAAC ]
[+] EMBL AU184111 [ AGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ]
[+] EMBL BE040932 [ GGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTCGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGATAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC CAATGGAGGCTATCTTGACCCAAC TAAGAAAGAAATGG GGCATCACACAACC ]
[+] EMBL CF333694 [ CGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ]
[+] EMBL AU031390 [ gAGANTGGATTGGTTNACCAAAGGAAGTTCANCCTGTTGTAAAATTGGCGCCCGCGAGTACAACAATGGANGCTATCTTGNCCCAACTTANGAAAGAGATGGCNAGCATCACANAACCGGAAANTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTATTTCTATATATNGNATGAGATTTGAGCCGTNTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACNTTGTACGTGGNCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTNCGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAAaaa ]
[+] EMBL BI798470 [ GAAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGAC AAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAaaaaa ]
[-] EMBL CF278980 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAACCGTATGAACATTTGGTGACCTAT TTAGTAGCTGAACTTCGCTGGTAATACCTTGTACGTGGTCCGAAAAAATCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAAAACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTGGAATATGTTTCTGAAGTGGTAaaaaaaa ]
[-] EMBL CF334962 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCGTTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA AAAAAAA ]
[-] EMBL CF333693 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTAaaaaaaaa ]
[-] EMBL CF333334 [ TAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCGTTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA AAAAAAA ]
[+] EMBL AU166788 [ GTNTGAACATTTGGTG CAAATNATTGTAGCTGAACTTCGCTGGTACTNCCTTGTACGTGGTCCGTGNACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTCTGCANATTTGGCTATGTTTTTGAAGTGGNACTATGCTGGTTCTTTTTNTGGCATTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence
[GAGTAGGAAAACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG]
[+] EMBL CF333333 [GAGTAGGAAAACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG]
[+] EMBL CF334961 [ GAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG]
consensusID : consensus_14440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence
[CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU184112 [CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14440#0 GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACT 60
consensus_14440#1 ---------------------------------------------------GAGTAGGAA 9
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 CACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGA 120
consensus_14440#1 AACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGA 69
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 TCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGC 180
consensus_14440#1 TCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGC 129
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAAC 240
consensus_14440#1 CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAAC 189
consensus_14440#2 --------CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCT--GAAC 50
* * * * ** ** * ** * * * * ** ** ****
consensus_14440#0 TTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGC 300
consensus_14440#1 TTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGC 249
consensus_14440#2 TTCG--CTGGTACTA--CCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNT 106
*** *** ** * **** * ** * * *** * * **
consensus_14440#0 TATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGT 360
consensus_14440#1 TATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGT 309
consensus_14440#2 CGCTTGTTTGGTTA-ACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAA 165
* * * * *** *** * * * ** ** ** ** *
consensus_14440#0 CCCCATAACACTGTCCATGA-GGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGA 419
consensus_14440#1 CCCCATAACACTGTCCATGA-GGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGA 368
consensus_14440#2 TTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAA 225
* * * * * * * * * * * ** ** * ** *
consensus_14440#0 CTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAA 479
consensus_14440#1 CTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG----------- 417
consensus_14440#2 AAAAAAAAAAAA------------------------------------------------ 237
* * * *
consensus_14440#0 CCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCGCCGCGA 539
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 GTACACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGCAGCATCACACAACCG 599
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 GAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCT 659
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 CCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCC 719
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 GTCTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGG 779
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 TCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTAC 839
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 GGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGT 899
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 GATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA 959
consensus_14440#1 ------------------------------------------------------------
consensus_14440#2 ------------------------------------------------------------
consensus_14440#0 AAAAAAAAAAAAAAAAAAAAAAAAAAA 986
consensus_14440#1 ---------------------------
consensus_14440#2 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||