These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1209 fasta sequence [CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGT-GCATGTTCTAACACTA-TAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACT-ACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCATTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA-ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA-CTGA-TGGTCTG-TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA-GTGT-CCAC-GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK059911 [CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGT GCATGTTCTAACACTA TAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACT ACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCATTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGA ] [+] EMBL AU056619 [ TGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGG GGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGGCATGTTCTAACACTATTAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACTAACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTT ] [+] EMBL BI810617 [ aGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACACATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA CAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAAAAAAaa ] [+] EMBL AU056620 [ AACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGNATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI808287 [ ctgGATTTTGGGCTCACCTGAGTGGTCTGCTCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA CCGTTACCCTGTTAGAGATGTACACCTTTTGGGAT TTTGAAGTTTTGTCCACGTGTCCCACAGTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGAAAAAAAAAA ] consensusID : consensus_14441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGAGTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTGCGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGTCTGGCAGTATGGCTGCAGCTCGTGGCGTCTGGGGAGGCGCGGGAGTTGCGGGTGCTAGCGGACTGCGGGCATGGGGTTACTGCGGATGTGACGGCGTCTGGAGTGGGACTGGCGGAGTGCCACTGGAGGGGCGGTGGTGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGGGTGGGAGGAGTGGTCGGGTTGGCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGGTGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGCGGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTGACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGTGTAGCTGCATGTGGTG] [+] EMBL AW155177 [GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGAGTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTGCGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGTCTGGCAGTATGGCTGCAGCTCGTGGCGTCTGGGGAGGCGCGGGAGTTGCGGGTGCTAGCGGACTGCGGGCATGGGGTTACTGCGGATGTGACGGCGTCTGGAGTGGGACTGGCGGAGTGCCACTGGAGGGGCGGTGGTGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGGGTGGGAGGAGTGGTCGGGTTGGCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGGTGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGCGGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTGACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGTGTAGCTGCATGTGGTG] consensusID : consensus_14441#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 616 fasta sequence [ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA-GGG-CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT] [+] EMBL CF337719 [ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGCGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCAT ] [+] EMBL CF317490 [ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGG GGGGCGGCGGTCGTGCTGCTGCTAATCGTCCNGTCGACGGTGGCC CCA GGGCCCGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGNGTACAGGTGCGAGTGCGCGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCT ACACTATAGCACCAGCA ] [+] EMBL CF302022 [ GAGTAGA ACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCC ACAG ] [+] EMBL CF333282 [ ACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCC CCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT] [+] EMBL CF334744 [ ACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGG TTTCAGTAACCTTCTGAACAT ] [+] EMBL CF279907 [ ATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGG CGGCCGTCGTCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCc ] consensusID : consensus_14441#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [TTTTTAAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAAAAATTTTACTTCCCCTGCTGATTTTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAAAGGACCCCCTTTGGGAAGTTTTAAGGGTTGTCCAGGGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGGGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF334743 [TTTTTAAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAAAAATTTTACTTCCCCTGCTGATTTTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAAAGGACCCCCTTTGGGAAGTTTTAAGGGTTGTCCAGGGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGGGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF333281 [ AAAATTGTTCAATCGGGGCGGATTGGGCAAGCATAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAATGGGGGGATTTCACAAAAAATTTTACTTCCCCTGCTGATTTTGGGGTCCCTAATGGTTTGTCAGGCTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAATGTACCCCTTTTGGGATGTTTTAAGTGTTGTCCAGGGGCCCCGTTAAGGTTTTTTTATTTTGGGTGAGATTTGATCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGATGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14441#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTTCCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATAAAATTTTATTTCCCTTGCTGATTTGGGGCTCACTAATGGTTTGTCAGGCTATATAAATAGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAACCAGTTACCCTGTTAAAAATGTCCCCCTTTTGGAATGTTTAAAGTGTTGTCCAGGGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCATTCATGTGAATTAAAAGGGAATAAACGGTTTTTGTGAAAAATTAAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF279906 [TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTTCCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATAAAATTTTATTTCCCTTGCTGATTTGGGGCTCACTAATGGTTTGTCAGGCTATATAAATAGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAACCAGTTACCCTGTTAAAAATGTCCCCCTTTTGGAATGTTTAAAGTGTTGTCCAGGGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCATTCATGTGAATTAAAAGGGAATAAACGGTTTTTGTGAAAAATTAAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14441#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [CCCGGCCAGGATAAACCAGTTAGCCTGTTAAAAATGTCCCCCTTTTGGGATGTTTAAAGTGTTGTCCAGGGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCATTCATGTGAATTAAAATGGAATAAACTGTTTTTGTGAATAACTGAATAAAGGGATGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF337720 [CCCGGCCAGGATAAACCAGTTAGCCTGTTAAAAATGTCCCCCTTTTGGGATGTTTAAAGTGTTGTCCAGGGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCATTCATGTGAATTAAAATGGAATAAACTGTTTTTGTGAATAACTGAATAAAGGGATGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACA 60 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 CCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCA 120 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 AGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGC 180 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 GGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGA 240 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 CGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGAC 300 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 GGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGA 360 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 GTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGT 420 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 CATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCC 480 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 TTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACTACTGCAACTGGCTGTT 540 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCA 600 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 TTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCT 660 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 GTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACC 720 consensus_14441#1 ------------------------------------------------------------ consensus_14441#2 ------------------------------ATGGACTGAAGGAGTAGAAAACACACACAC 30 consensus_14441#3 -------------------------------------------------------TTTTT 5 consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTC 780 consensus_14441#1 -----GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAA 55 consensus_14441#2 CCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAA 90 consensus_14441#3 AAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTT 65 consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ----TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTT 56 consensus_14441#0 AGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTT 840 consensus_14441#1 GAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCG 115 consensus_14441#2 GAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCG 150 consensus_14441#3 CCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAA 125 consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 CCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATA 116 consensus_14441#0 CCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACAATGGGGCGATTTCACATA 900 consensus_14441#1 GCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGAC 175 consensus_14441#2 GCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGAC 210 consensus_14441#3 AAATTTTACTTCCCCTGCTGATT--TTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAAT 183 consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 AAATTTTATTTCCCTTGCTGATT--TGGGGCTCACTAATGGTTTGTCAGGCTATATAAAT 174 consensus_14441#0 AAATTCTACTTCCCTTGCTGATT--TTGGGCTCACTGATGGTCTGTCAGGCTATATAGAT 958 consensus_14441#1 GATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACG 235 consensus_14441#2 GATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACG 270 consensus_14441#3 AAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAA 243 consensus_14441#5 ---------------------------------------------CCCGGCCAGGATAAA 15 consensus_14441#4 AGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAA 234 consensus_14441#0 AGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA 1018 consensus_14441#1 GTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGA 295 consensus_14441#2 GTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTC-GGGGTTCCCGGGGTACAGGTGCGA 329 * ** * consensus_14441#3 ACAGTTAGCCTGT---TAAAAAAGGACCCCCTTTGGGAA---GTTTTAAGGGTTGTCCAG 297 consensus_14441#5 CCAGTTAGCCTGT---TAAAAATGTCCCCCTTTTGGGAT---GTTTAAAGTGTTGTCCAG 69 consensus_14441#4 CCAGTTACCCTGT---TAAAAATGTCCCCCTTTTGGAAT---GTTTAAAGTGTTGTCCAG 288 consensus_14441#0 GCAGTTAGCCTGT---TAGAGATGTACACCTTTTGGGAT---GTTTGAAGTGTTGTCCAG 1072 consensus_14441#1 GTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTG 355 consensus_14441#2 GTGCG-AGCCTGGGTGGAAGCA-GATGCACGTCGGCGACCAGGC-CAGCTTCCTGCCCTG 386 * **** * * * * * * ** ** * consensus_14441#3 GGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCAT---------TCATGT 348 consensus_14441#5 GGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCAT---------TCATGT 120 consensus_14441#4 GGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCAT---------TCATGT 339 consensus_14441#0 TGTCCACGTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACAT---------TCATGT 1123 consensus_14441#1 CGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGT-CTGGCAGTATGGCTGCAGCTCGTG- 413 consensus_14441#2 CGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGC 446 ** * * * * * * ** * ** consensus_14441#3 GAATTAAAAAGGAAAAAACTGTTTTTG-----TGAAAAACTGAAAAAAGGGGGGTTT-TA 402 consensus_14441#5 GAATTAAAATGGAATAAACTGTTTTTG-----TGAATAACTGAATAAAGGGATGTTTATA 175 consensus_14441#4 GAATTAAAAGGGAATAAACGGTTTTTG-----TGAAAAATTAAATAAAGGGATGTTTATA 394 consensus_14441#0 GAATTAAAATGGAATAAACTGTCTCTG-----TGAATAACTGAATAAAGGGATGTTTATA 1178 consensus_14441#1 GCGTCTGGGGAGGCGCGGGAGTTGCGGG-TGCTAGCGGACTGCGGGCA-TGGGGTTACTG 471 consensus_14441#2 GCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTG 506 * * * * * ** * consensus_14441#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 443 consensus_14441#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 224 consensus_14441#4 TGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 434 consensus_14441#0 TGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 1209 consensus_14441#1 CGGATGTGACGGCGTCTG---GAGTGGGACTGGCG--GAGTGCCACTGGAGGGGCGGTGG 526 consensus_14441#2 CGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGA 566 * * consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ------------------------------------------------------------ consensus_14441#1 TGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGG-GTGGGAGGAGTGGTCGGGTTG 585 consensus_14441#2 GGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT---------- 616 consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ------------------------------------------------------------ consensus_14441#1 GCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGG 645 consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ------------------------------------------------------------ consensus_14441#1 TGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGC 705 consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ------------------------------------------------------------ consensus_14441#1 GGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTG 765 consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ------------------------------------------------------------ consensus_14441#5 ------------------------------------------------------------ consensus_14441#4 ------------------------------------------------------------ consensus_14441#0 ------------------------------------------------------------ consensus_14441#1 ACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGT 825 consensus_14441#2 ------------------------------------------------------------ consensus_14441#3 ---------------- consensus_14441#5 ---------------- consensus_14441#4 ---------------- consensus_14441#0 ---------------- consensus_14441#1 GTAGCTGCATGTGGTG 841 consensus_14441#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||