These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 975 fasta sequence [CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA-TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT-CAAGG-CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT-GACAACACTGCACCCATCT-ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT-CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA-ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT-GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATAATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTGCGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT] [+] EMBL AK058456 [CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTGCGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT] [+] EMBL AK105165 [ CCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATAT ] [+] EMBL CF306402 [ GCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGC ] [+] EMBL AU197470 [ ACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATTGAGGAGATTGTCCAATTTGCTTGCACCCGNTT CAAGGNCGGAGTATCCAATTTTTGNTAAGGTTGATGTTAATGGTGGACAACANTGCACCCATCT ACAAGTTTCTGNAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTATTGTGGAGCGCTATGC CCA ACTACTTCTCCACTCAGCATGGAGAAGG CATCAAGAAGCTGCTTTGAAGTTCTTAAAACCTTACCGCCGGCGCCANCAGATGCACTGCTGCGTTGCATTGAGCACTT GG ACTTCCANTAATGTTGTAATAAAA ] [+] EMBL AU070926 [ CAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAGACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTG ] [+] EMBL AU163733 [ CCAATTTGCTTGCACCCGCTTCCAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCTAACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATATCCAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGNATCANTTTGCCCCTTTATTGAAAaana ] [+] EMBL AU198223 [ CCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACNCTGCACCCATNT ACAAGTTTTTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTNTCCAAGTTNTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTNTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTNTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAAaaaa ] consensusID : consensus_14444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 944 fasta sequence [CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCC-ATCTACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTTCTCC--AGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BF430853 [CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCC ATCTACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTTCTCC AGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAA ] [+] EMBL AU095588 [ ATGNTAATGGTGACAACACTGNACCCAATCTACAAGTTTCTGAAGTCCAGCAAAGGT GGTCTTTTCGGTGACAATATCAAATGGAACTTCTCCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CB681979 [ TGTGCAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AU225245 [ GAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAgcggc ] [+] EMBL AU058142 [ AGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAG CCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAA ] consensusID : consensus_14444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence [TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTCCCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCACCCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATGGAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTACTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGTGCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAATGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACATATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTATACATGGTGACGATGATGCGCGTATCATGTC] [+] EMBL AW155043 [TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTCCCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCACCCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATGGAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTACTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGTGCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAATGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACATATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTATACATGGTGACGATGATGCGCGTATCATGTC] consensusID : consensus_14444#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 534 fasta sequence [TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGA-GCCAGTTGTATGA-GAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACCTTATCAAAAA] [+] EMBL CA754205 [TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGA GCCAGTTGTATGA GAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACCTTATCAAAAA] [+] EMBL OSC252 [ CCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCG GGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGNCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTNCTTATCGTCAATGTTGCATCTCAGTGTGGNTTGACCAATTCCAACTACANGGAGCTTAGGCCAGTTGTATTAGGAAGTACAAGGACCAGGGTTTTTAGATCCTTGTTTTTCCATG AAACAGTTTGGTGGANAGGAc ] consensusID : consensus_14444#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [CGGCGACCACCCAGNATGCNACTCCCTGCGTNTGCATTTGAGCCACTTGGAACTNCCCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAA] [+] EMBL D42891 [CGGCGACCACCCAGNATGCNACTCCCTGCGTNTGCATTTGAGCCACTTGGAACTNCCCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14444#1 -----------CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGC 49 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCG 60 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 CGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGT 109 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 TTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGT 120 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 GCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCC 169 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 GCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCC 180 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 GGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTC 229 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 GGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTC 240 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTC 289 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTC 300 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 CTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGC 349 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 CTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGC 360 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 CAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAG 409 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 CAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAG 420 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 TTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTC 469 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 TTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTC 480 consensus_14444#2 ------------------------------------------------------------ consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 AAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATC 529 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 AAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATC 540 consensus_14444#2 ----------------TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTC 44 consensus_14444#3 -----------------------TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCC 37 consensus_14444#1 TACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTT 589 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 TACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATATCAAATGGAACTTC 600 consensus_14444#2 CCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTC 104 consensus_14444#3 CCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTC 97 consensus_14444#1 CTCCAGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCT 649 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 TCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCT 660 consensus_14444#2 GGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCC 164 consensus_14444#3 GGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCC 157 consensus_14444#1 CCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCC 709 consensus_14444#4 --------------------------------------------------------CGGC 4 consensus_14444#0 CCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCC 720 consensus_14444#2 GCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGAC 224 consensus_14444#3 GCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGAC 217 ** * consensus_14444#1 G--GCGCCACCAGATGCA--CTGCTGCG-TT-GCATT-GAGC-ACTT-----GGAACTTC 756 consensus_14444#4 G--ACCACCCAGNATGCNACTCCCTGCG-TNTGCATTTGAGCCACTT-----GGAACTNC 56 consensus_14444#0 G--GCGCCACCAGATGCA--CTGCTGCG-TT-GCATT-GAGC-ACTT-----GGAACTTC 767 consensus_14444#2 TTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTC 284 consensus_14444#3 TTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTC 277 * **** * * * * * **** *** **** * consensus_14444#1 C-AATAAT-GTTGTAA-TAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCC- 812 consensus_14444#4 CCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCC- 115 consensus_14444#0 C-AATAAT-GTTGTAA-TAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCC- 823 consensus_14444#2 CTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTG 344 consensus_14444#3 CTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTG 337 * * * ** * * ** * *** * * * * ** *** consensus_14444#1 --C-TGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 868 consensus_14444#4 --CCTGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 172 consensus_14444#0 --C-TGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 879 consensus_14444#2 AGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTT--TGAGATC--CTTGCTTTCCCATG 400 consensus_14444#3 AGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTT--TGAGATC--CTTGCTTTCCCATG 393 * * *** * * ** *** * * ** * *** ** *** ** ** consensus_14444#1 TTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 928 consensus_14444#4 TTGCCCCTTTATTGAAA------------------------------------------- 189 consensus_14444#0 TTGCCCCTTTATTGAAATATAATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTG 939 consensus_14444#2 CAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCAC 460 consensus_14444#3 CAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCAC 453 ** *** ** * consensus_14444#1 AAAAAAAAAAAAAAAA-------------------------------------------- 944 consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 CGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT------------------------ 975 consensus_14444#2 CCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGC 520 consensus_14444#3 CCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGC 513 consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 ACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATG 580 consensus_14444#3 ACCCATCTACCT-TATCAAAAA-------------------------------------- 534 consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 GAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTA 640 consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 CTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGT 700 consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 GCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAA 760 consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 TGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACA 820 consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ------------------------------------------------------------ consensus_14444#4 ------------------------------------------------------------ consensus_14444#0 ------------------------------------------------------------ consensus_14444#2 TATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTAT 880 consensus_14444#3 ------------------------------------------------------------ consensus_14444#1 ------------------------------ consensus_14444#4 ------------------------------ consensus_14444#0 ------------------------------ consensus_14444#2 ACATGGTGACGATGATGCGCGTATCATGTC 910 consensus_14444#3 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||