These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1062 fasta sequence [GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC-GGGGATCTTGTCGCAATGCACTCGGCATGGG-CGAAGGGCGACCATGTGT-A-CGTTGTTCATCCTTCGGCA-GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT-TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA] [+] EMBL CF332700 [GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGA ] [+] EMBL CF333737 [GAGTAG AAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGGTTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAACGGGGGATCTTGTCGCAATGCACTCGGCATGGGCCGAAGGGCGACCATGTGTNACCGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGA ] [+] EMBL AK104117 [ ACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGACGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTG ] [+] EMBL CF312268 [ CTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGC ] [+] EMBL CF281234 [ TGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGC ] [+] EMBL AK061452 [ TCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGAT ] [+] EMBL AK104526 [ CCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCG ] [-] EMBL CF312269 [ ATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCAT CTTCGGCAGGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA] [-] EMBL CF332699 [ GCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTAaaaaaa ] [-] EMBL CF291405 [ T A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGTCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTAaaaaaa ] [-] EMBL CF281235 [ ATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATAAAAAAAAGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCAAATATAAACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATGTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTGGGCTTTTTGTTG ] consensusID : consensus_14445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1000 fasta sequence [TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAAGAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA] [+] EMBL CF309790 [TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAAGAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGA ] [-] EMBL CF309791 [ TCGGCATGGGCGAAGGGCGACCATGTGTA CGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA] consensusID : consensus_14445#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence [GGCATGGGCGAAGGGCGACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAAAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACAAAAAAAAAAAAAAAAAAA] [-] EMBL CF333738 [GGCATGGGCGAAGGGCGACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAAAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACAAAAAAAAAAAAAAAAAAA] [+] EMBL CF196101 [ GGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTATTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAACTGTCAAGTCCCTTTTCCTAAAAAAAAA ] consensusID : consensus_14445#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [ATTGTAACTAGGCGCGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF298236 [ATTGTAACTAGGCGCGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14445#0 GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGC 60 consensus_14445#1 -----TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGC 55 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGC 120 consensus_14445#1 GGCGGCGGCG---TCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGC 112 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 CTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGAT 180 consensus_14445#1 CTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGAT 172 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGG 240 consensus_14445#1 GACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGG 232 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 AAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAAC 300 consensus_14445#1 AAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAAC 292 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 AGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCT 360 consensus_14445#1 AGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCT 352 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 CCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAA 420 consensus_14445#1 CCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAA 412 consensus_14445#2 ------------------------------------------------------------ consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GAAC-GGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTAC-GTT 478 consensus_14445#1 GAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTT 472 consensus_14445#2 ----------------------------GGCATGGGCGAAGGGCGACCATGTGTAC-GTT 31 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATG 538 consensus_14445#1 GTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATG 532 consensus_14445#2 GTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATG 91 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 598 consensus_14445#1 GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 592 consensus_14445#2 GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 151 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 658 consensus_14445#1 GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 652 consensus_14445#2 GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 211 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAGAAGGTTGATGGCAAATGGTTCAT 717 consensus_14445#1 AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAGAAGGTTGATGGCAAATGGTTCAT 711 consensus_14445#2 AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAAAAGGTTGATGGCAAATGGTTCAT 270 consensus_14445#3 ---------------ATTGTAACTAGGCGCGGCTGAGATATTCGTCAG--ACTGTTAAGT 43 *** ** * * * *** * * * * * ** * * consensus_14445#0 TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 777 consensus_14445#1 TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 771 consensus_14445#2 TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 330 consensus_14445#3 CCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 103 * * * ** * ** * ** * ** * * * ** * consensus_14445#0 GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 837 consensus_14445#1 GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 831 consensus_14445#2 GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 390 consensus_14445#3 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 127 ** * * * * consensus_14445#0 GTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 897 consensus_14445#1 GTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 891 consensus_14445#2 GTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 450 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 957 consensus_14445#1 TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 951 consensus_14445#2 TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 510 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACT 1017 consensus_14445#1 TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA----------- 1000 consensus_14445#2 TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACA 570 consensus_14445#3 ------------------------------------------------------------ consensus_14445#0 GTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA 1062 consensus_14445#1 --------------------------------------------- consensus_14445#2 AAAAAAAAAAAAAAAAAA--------------------------- 588 consensus_14445#3 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||