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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1199 fasta sequence
[TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC]
[+] EMBL AK111859 [TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC]
consensusID : consensus_1445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG]
[+] EMBL AY345223 [GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1445#0 TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGT 60
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 TTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGG 120
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 CGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 180
consensus_1445#1 -----GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 55
*******************************************************
consensus_1445#0 CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 240
consensus_1445#1 CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 115
************************************************************
consensus_1445#0 ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 300
consensus_1445#1 ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 175
************************************************************
consensus_1445#0 TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 360
consensus_1445#1 TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 235
************************************************************
consensus_1445#0 AGCCTTCTATTGATCTGAATTT-------------------------------------- 382
consensus_1445#1 AGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTT 295
**********************
consensus_1445#0 ----------------------------AGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 414
consensus_1445#1 ATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 355
********************************
consensus_1445#0 AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 474
consensus_1445#1 AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 415
************************************************************
consensus_1445#0 GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTAT 534
consensus_1445#1 GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCT 475
********************************************************** *
consensus_1445#0 GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 594
consensus_1445#1 GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 535
************************************************************
consensus_1445#0 TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 654
consensus_1445#1 TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 595
************************************************************
consensus_1445#0 CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 714
consensus_1445#1 CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 655
************************************************************
consensus_1445#0 CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 774
consensus_1445#1 CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 715
************************************************************
consensus_1445#0 TAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACC 834
consensus_1445#1 TAGG-------------------------------------------------------- 719
****
consensus_1445#0 ATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAA 894
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGT 954
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 TAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTT 1014
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAA 1074
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 ATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTAT 1134
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGC 1194
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 TAGTC 1199
consensus_1445#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||