These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 605 fasta sequence [AAGGAAACCCTAAGCGAAGCGGAGGA-GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA-CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT-TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAAATTCTGTGCAAAAAAAAAAA] [+] EMBL AK059542 [AAGGAAACCCTAAGCGAAGCGGAGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGAT ] [+] EMBL AU162296 [ AGCGNAG ATAGGANGANAAANCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGANGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA NACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGna ] [+] EMBL AU164638 [ AGCGGAGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGAaaaaaa ] [+] EMBL OSR08592A [ aagananGGA GAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCNAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA NACGGGGAAGGCGGCCTNGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCT ] [+] EMBL AU075615 [ AGAAAGCAATGGCATCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATNGCGAAGAAGCTGCTGCGGA CACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCNCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTT ] [+] EMBL AU166187 [ AATGGCATNCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGA CACGGGGAAGGCGGCCTGGATCGCGGGGA CCAACTTNCTCGTCCTCGTCGTCCCGCTCATCATCCTGATAGACCGCGAGCAGCAAGTCAACGACTTCGAGTTCCAGAAGCAn ] [-] EMBL CB966888 [ TGGCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGACCCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCT ] [-] EMBL BU673050 [ TGGCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGCATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTT ] [+] EMBL AU075616 [ CGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGNCGGCGNATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCTGGATCGCGGGGA CCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGAGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTACTATATTTCATTCTGTGCAAAAAAAAAAA] [+] EMBL CA756915 [ AGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTCTCAACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCAaaaaaaa ] [+] EMBL AU058402 [ CCTCGGCGGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTNTAAAAA ] [+] EMBL CF331538 [ CTCAAATGATCCATCTGTCCATCCTTAGCT TCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCaaaaaaaa ] [+] EMBL AU058326 [ CTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACTTTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAA ] consensusID : consensus_14458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAGCAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGCGGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGCCTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACCTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAATCAAACTTTCTTGTTTTCATCATCGATCAAAAAAAAAA] [+] EMBL BI795005 [CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAGCAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGCGGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGCCTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGCCCGCGCCTCTCAAATGATCCATCCGTCCATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACCTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAATCAAACTTTCTTGTTTTCATCATCGATCAAAAAAAAAA] consensusID : consensus_14458#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGGCGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGGTCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCTCAACGACCTTGAGCTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTAACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTTCTTGTTTTCATTAATTTCACCATTATGCTGCTCTGATGAGAAAA] [+] EMBL AU085970 [GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCGAAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGGCGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGGTCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCTCAACGACCTTGAGCTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTAACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTTCTTGTTTTCATTAATTTCACCATTATGCTGCTCTGATGAGAAAA] consensusID : consensus_14458#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [TCAAATGATCCATCAAAACATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAAAAAAAAC] [-] EMBL CF331539 [TCAAATGATCCATCAAAACATCCTTAGCTTCTACTGCTGCCTACCTATGTCGTCGTCGTCGTCGTCTTAGTCTTTTTCTTCTTTTCTTCTTCTCTTAGTGTACACTGCTGCTACTAGTGTTTTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTCATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAAAAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14458#0 AAGGAAACCCTAAGCGAAGCGGAGGAGAGAAAGCAATGGCATCCCTGAGCAAGCGCGGCG 60 consensus_14458#3 ------------------------------------------------------------ consensus_14458#1 --------------------CTAAGCGAACCGGAGGAGAGAAACCAATGGCGTCCCTGAG 40 consensus_14458#2 ------------------------------------------------------------ consensus_14458#0 GCGGCGGCGGCGAGGGGGAGGGCATCCTGGCCTCCTTCTCCCGGTCTTCGGTGGCGGCGC 120 consensus_14458#3 ------------------------------------------------------------ consensus_14458#1 CAAGCGCGCGCGCGCGCGAGGGGGAGGACATCCTGCCCTCCTTCTCCCGGTCTTCGGTGC 100 consensus_14458#2 ------------------------------------------------------------ consensus_14458#0 ATGGGCGCGAGGCGGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGGCGGCCT 180 consensus_14458#3 ------------------------------------------------------------ consensus_14458#1 GGCGCATGGGCCGAGCCGCGACCATGGCGAAGAAGCTGCTGCGGAGCACGGGGAAGCCGC 160 consensus_14458#2 --------------------------GCGTCCCTGAGCAAGCGCGGCGGCGGCGGCGGCG 34 consensus_14458#0 GGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCGCG 240 consensus_14458#3 ------------------------------------------------------------ consensus_14458#1 CTGGATCGCGGGGACCACCTTCCTCGTCCTCGTCGTCCCGCTCATCATCGAGATGGACCG 220 consensus_14458#2 AAGGGGAGGGCATCCTGGCGTCATGGATGGCGGCGCATGGGCGCGAGGCGGCGAGCAGGG 94 consensus_14458#0 AGCAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGGCCGCCACCGC 300 consensus_14458#3 ------------------------------------------------------------ consensus_14458#1 CGACAGCAGCTCAACGACCTCGAGCTCCAGCAGCAGGCGCTCCTCGGCGGCCGCCACCGC 280 consensus_14458#2 CGAAGAAGGTGGTGCGGACGTGTGNGAAGGCGGCGTGGATCGCGGGGACCACCTTCCTGG 154 consensus_14458#0 CCGCGCCTCTCAAATGATCCATCCGTCC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 358 consensus_14458#3 ---------TCAAATGATCCATCAAAAC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 49 consensus_14458#1 CCGCGCCTCTCAAATGATCCATCCGTCC--ATCCTTAGCTTCTACTGCTGCCTACCTATG 338 consensus_14458#2 TCCTCGTCGTCCCGCTCATCATCGAGATGGATCGCGAGCAGCAGCT-CAACGACCTTGAG 213 ** **** *** *** * ** * * * * * consensus_14458#0 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 413 consensus_14458#3 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 104 consensus_14458#1 TCGTCGTCGTCGTCGT--CTTAGTCTTTTTCTTCTT---TTCTTCTTCTCTTAGTGTACA 393 consensus_14458#2 CTCCAGCAGCAGGCGCTCCTCGGGCCCGCGCCCCTCAAATGATCCATCCATCCATCCTTA 273 * * * ** ** * * * ** * * * ** * * * consensus_14458#0 C-TGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTC 471 consensus_14458#3 C-TGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAAATCAAAACTTTCTTGTTTTC 162 consensus_14458#1 CCTGCTGCTACTAGTGTT-TTTGCCTGTCTAGTCGGACAATC--AAACTTTCTTGTTTTC 450 consensus_14458#2 ACTTCTACTAATAGTGTTCTTTGCCTGTCTAGTCAGACAAAATCAAACTT-CTTGTTTTC 332 * ** *** ******* *************** ***** ****** ********* consensus_14458#0 ATCATCGATCTATGCTATGCTGCTCTGATGAGATGTCGCTTTTTCTTTCCTGCTGCTACT 531 consensus_14458#3 ATCATCGATCTATGCTATGCTGCTCTGGTGATATGTCGCTTTTTCAAAAAAAAAAAAAAA 222 consensus_14458#1 ATCATCGATCAAAAAAAAAA---------------------------------------- 470 consensus_14458#2 ATTAATT-TCACCATTATGCTGCTCTGATGAGAAAA------------------------ 367 ** * ** * consensus_14458#0 TTATTTTCACGCTCATCTTATCATGCCGAATAAATCGATCGGTTNCTATAAAAAATTCTG 591 consensus_14458#3 AAAAAAC----------------------------------------------------- 229 consensus_14458#1 ------------------------------------------------------------ consensus_14458#2 ------------------------------------------------------------ consensus_14458#0 TGCAAAAAAAAAAA 605 consensus_14458#3 -------------- consensus_14458#1 -------------- consensus_14458#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||