These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1148 fasta sequence [CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT] [+] EMBL AK064132 [CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT] consensusID : consensus_1446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761715 [AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1446#0 CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTC 60 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 CATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGC 120 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 CGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACAT 180 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 TGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGA 240 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 CAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCC 300 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 CACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCC 360 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 AGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCA 420 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 GGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGAT 480 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 GCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGAT 540 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 TGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGT 600 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 GGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGA 660 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 GGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGT 720 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 TCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGG 780 consensus_1446#1 ------------------------------------------AGAGGACGAGA-CAAGGG 17 **** * ****** consensus_1446#0 GAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 840 consensus_1446#1 GGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 77 * *********************** ********************************** consensus_1446#0 TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGA 900 consensus_1446#1 TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGA 137 ****************************************************** ***** consensus_1446#0 TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTT--GTTGATGTTCAATGTAGCAC 958 consensus_1446#1 TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCAC 197 ************************************** ******************** consensus_1446#0 ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGG 1018 consensus_1446#1 ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGG 257 ************************************************** * ******* consensus_1446#0 CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAG 1078 consensus_1446#1 CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAG 317 ********************************************* ************** consensus_1446#0 CTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 1138 consensus_1446#1 CTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 377 **** ************** **************************************** consensus_1446#0 AAGATCGCAT----------------------------- 1148 consensus_1446#1 AAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA 416 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||