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Oryza sativa
cluster # 1446 cluster # 1446       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1446#0 length = 1148 sequences # 1  
consensus_1446#1 length = 416 sequences # 1  

consensusID : consensus_1446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1148
fasta sequence
                              [CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT]

[+] EMBL AK064132             [CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT]


>consensus_1446#0 CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTC CATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGC CGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACAT TGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGA CAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCC CACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCC AGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCA GGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGAT GCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGAT TGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGT GGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGA GGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGT TCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGG GAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGA TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACAT GCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCG ATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCT CAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAA GATCGCAT



consensusID : consensus_1446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence
                              [AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761715             [AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA]


>consensus_1446#1 AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGAT TAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTT CTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTT GATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATC TTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTC AGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAA AGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1446#0      CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTC 60
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      CATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGC 120
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      CGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACAT 180
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      TGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGA 240
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      CAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCC 300
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      CACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCC 360
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      AGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCA 420
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      GGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGAT 480
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      GCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGAT 540
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      TGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGT 600
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      GGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGA 660
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      GGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGT 720
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      TCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGG 780
consensus_1446#1      ------------------------------------------AGAGGACGAGA-CAAGGG 17
                                                                 **** *     ******

consensus_1446#0      GAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 840
consensus_1446#1      GGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 77
                      * *********************** **********************************

consensus_1446#0      TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGA 900
consensus_1446#1      TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGA 137
                      ****************************************************** *****

consensus_1446#0      TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTT--GTTGATGTTCAATGTAGCAC 958
consensus_1446#1      TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCAC 197
                      **************************************  ********************

consensus_1446#0      ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGG 1018
consensus_1446#1      ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGG 257
                      ************************************************** * *******

consensus_1446#0      CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAG 1078
consensus_1446#1      CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAG 317
                      ********************************************* **************

consensus_1446#0      CTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 1138
consensus_1446#1      CTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 377
                      **** ************** ****************************************

consensus_1446#0      AAGATCGCAT----------------------------- 1148
consensus_1446#1      AAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA 416
                      **********                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)