cluster # 14471

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Oryza sativa
cluster # 14471 cluster # 14471 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14471#0 length = 1636 sequences # 13
consensus_14471#1 length = 658 sequences # 1

consensus_14471#2 length = 540 sequences # 1
consensus_14471#3 length = 411 sequences # 1

consensusID : consensus_14471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1636
fasta sequence

                              [AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG-GGCAGCTGC-GGCGCA-TCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG-CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC-AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG-CTGATAACCCTT-CGACACTGT-ATGG-TCACCCAGATTGTCTGCGAG-CCTGAAGACCT-C--AACTGATCAT-CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA-CCCTG-AATTTTGTGTATATATATGACGTGTTAGTCACT-CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC--AAAAGTATGATGGTTTCGGATTTTTAAAAAAAAAAAAAAA]

[+] EMBL AK067953             [AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG GGCAGCTGC GGCGCA TCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT C  AACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTCGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC  AAAAGTATGATGGT                          ]
[+] EMBL CB644793             [                      ACACCGGAGAGGACACAGCGACGAAAGCAGCGAAGTCGGCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGCGACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCG GGCAGCTGC GGCGCA TCGCCTCCGCGCCTGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCGACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB676657             [                                                                                                                                 ACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGAGCTCGGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGACAAGTACCTCGCCGCGTCCGAGGCAGCTGCAGGCGCAGTCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTCACGGAGTACGGCGGCGGCGGCGGCCACGGAGACCAGCCGATCCTCGCGGTGGTGCGGGGGCACGTCCGCACCGCCCCCCAAGGCAAGTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AU093806             [                                                                                                                                                                                                                                                                                                CTCCGCTCGCTCCTCGCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGCCACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATNCTCTCNTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTNCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA305761             [                                                                                                                                                                                                                                                                                                                                                                                                                 CCCAGGCTCCGGCGAGCACTGCGTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGGACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTTAGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAGTTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTCGACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG TCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAAAAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C74909               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GACTATTATTGGCAATGGTTACCCAATTGCGTTGTTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGACCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA757079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGACCTTACCAAGGATGAGATGGAAG CCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCACAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT N  CACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACANAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTA                                                                                                                                                                                                                                         ]
[-] EMBL CB644794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGCCCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTG CTGATAACCCTT CGACACTGT ATGG TCACCCAGATTGTCTGCGAG CCTGAAGACCT C  AACTGATCAT CCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTAAGGCTAGC  AAAAGTATGATGGT                          ]
[+] EMBL AU033237             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGGAAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCC AAGAGGTATTTCGACAAACTACTGATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGG ACGTCAGTNCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL D43613               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCNTGTCTNCTGCTGCAAATGTGNACTGNTTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGNTACATGATAAGGATCTACGACAATTGAGTCTTCTTGA                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU033238             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTTTGCCTNAAAACCCTTACGACACTNTAATGG TCACCCAGATTNTCTGCTAGCCCTGAAGACCTAC  AACTGATCAT CCTGCGTGCACTAGNCTAAGCTACTTGGCTAANAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTNTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAG TGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC  AAAAGTATGATGG TTCGGATTTTTAAAAAAAAAAAAAAA]
[+] EMBL D42764               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgaaaacCTNT ATGGNCCACCCANATTGTCTTCGAN CCTGAAGACCT CNAAACTGATCATCCCTGCGTGCACTAGCCTAAGCTACTTGGCTAACAAAACTATGTTACCCCTGAAATTTTGTGTATATATATGNCGTGTTAGTCACTCCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGA NTGACGCCTANAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCNTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGC                                          ]
[+] EMBL AU225204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gcc gctCCCAGATTGTCTGCGAG CCTGAAGACCT C  AACTGATCAT CCTGCGTGCACTANTCTAAGCTACTTGGCTAACAAAACTATGTTA CCCTG AATTTTGTGTATATATATGACGTGTTAGTCACT CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATATAATCCTGTAGCTANCCAAACTGCCANAGTCNTGAGCTGACNCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCCAAAAACTATGATGGGTTCGGATTTTTtgaccgg        ]




>consensus_14471#0
AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCG
GCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGC
GACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTC
GGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCGGG
CAGCTGCGGCGCATCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTC
GCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGC
CACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGC
GTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGG
ACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTT
AGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAG
TTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTC
GACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTG
TTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGA
CCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGAC
CTTACCAAGGATGAGATGGAAGCCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCT
AGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGG
AAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAGAGGTATTTCGACAAACTACT
GATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTGAAATGGGAGACGGGCAA
CTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTT
GTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATG
TGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTT
TGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCA
ACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCCTGA
ATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCAGAGATC
ACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGA
GCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCAT
GTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCAAAAGTATGATGGTTTCGGATTTT
TAAAAAAAAAAAAAAA

consensusID : consensus_14471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGGAAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACTGATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACCTCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCCTNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCNNANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCCCNNAANTCCTTNAA]

[+] EMBL AA752823             [TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGGAAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACTGATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACCTCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCCTNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCNNANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCCCNNAANTCCTTNAA]




>consensus_14471#1
TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCTAGTGTTGTTCTTG
GAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGGAAGAAGATCAAAG
ANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACTGATGAAGTTACAG
ATGATCAGTCTAGCGATGAANANGCTGGTGAAATGGGAGACGGGCAACTATGTGTTATAT
GCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCA
AATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACA
TCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCT
TCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACCTCAACTGATCATCCTG
CGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCCTNAATTTNGTGTNTAT
NTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCNNANATCNCCCGGNATN
CTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCCCNNAANTCCTTNAA

consensusID : consensus_14471#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [AGGGTGGTGGAAATGGGAGGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCCGGAATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGGGCCGCT]

[-] EMBL CB676658             [AGGGTGGTGGAAATGGGAGGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCCGGAATTTTGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGGGCCGCT]




>consensus_14471#2
AGGGTGGTGGAAATGGGAGGACGGGCAACTATGTGTTATATGCTTAAGGAAAAGAAGGAA
GGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGA
ACGTCAGTTTGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACAGGATAAGGAT
CTACGACAATTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACC
CAGATTGTCTGCGAGCCTGAAGACCTCAACTGATCATCCTGCGTGCACTAGTCTAAGCTA
CTTGGCTAACAAAACTATGTTACCCGGAATTTTGTGTATATATATGACGTGTTAGTCACT
CCCAGGAGAACTCATATGGGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCT
GTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTAC
CAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGGGCCGCT

consensusID : consensus_14471#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTGAAATGGGANACGGGGCAACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCCTGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA]

[+] EMBL C98647               [GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTGAAATGGGANACGGGGCAACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATGTTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCCTGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA]




>consensus_14471#3
GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTGAAATGGGANACGGGGCAACTATG
TGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCACCTTGTCT
GCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCTATGTGTC
GGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATGTTTTGCT
GATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTCAACTG
ANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCCTGAANTT
TGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      AAATCGGCAAAATCGCCACCGCACACAGGAGAGGACACAGCGACGAAAGCAGCGAAGTCG 60
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GCGGCGCGTCGCGCCCCCACCGCATCGATCGCCTCGCCCCGGTGAGCCATGTCGGCGCGC 120
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GACAGGGAGACGGCCGTGGCGCTGGCCCGCCTCGCCGCCGCGCTGGACGGGGCGGTGCTC 180
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GGCCTCGGCACGGCGGCGCTCGCCGTCGCCTCGTGGGTCAAGTACCTCGCCGCGTCCGGG 240
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      CAGCTGCGGCGCATCGCCTCCGCGCCGGCGGCCGCCATACCCGACCTCCGCTCGCTCCTC 300
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GCGGAGTACGGCGGCGGCGGCGGCGACGGCGACCAGCCGATCCTCGCGGTGGTGCGGGGC 360
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      CACGTCCGCGCCGCCCCCCGAGGCAAGTACCTCGTCCCCCCAGGCTCCGGCGAGCACTGC 420
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GTCGTCGCAAAGCATACCCAGCTGTGCTTGTTCAATGAATGGAGAGGCATCTTTGGGTGG 480
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      ACCTTTGATCTGCATGCTCTCTTTTTCAAATCAATTAAGGAGCAGATTATAACATCATTT 540
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      AGATGGGTTCCATTTGTTCTTGTAGATCCTGAAAACATGACTGGAATGGTCCATGTGAAG 600
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      TTAGACAGGGCAATGCAACCATTACCTCTTACAACTGTGTATCATAAACTTACCCCAGTC 660
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GACTCAACTCCTTACACATTGTTTCAGACTATTATTGGCAATGGTTACCCAATTGCGTTG 720
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      TTGGATGAGGAAAAGATACTTCCTGTTGGAAAGGAGATTACAGCAATAGGCTATATTCGA 780
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      CCTCATAAAGCAAGTGTTGAGATCAGCTCATGCTCAGAAATACCTTTTTTCTTGTCTGAC 840
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      -------------TTCGGCCGANCCGATTGTCTTCTCGTGCTAAAACACTCTTTTGGGCT 47
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      CTTACCAAGGATGAGATGGAAGCCGAGTTGTCTTCTCGTGCTAAAACACTCTTTTGGGCT 900
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      AGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGANCTGG 107
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      AGTGTTGTTCTTGGAACAATGTCAGTTTGCTTGCTGGGCTTTGCGACTTACAGGAGCTGG 960
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      AAGAAGATCAAAGANCGGANGGAGGCAAGGCAAGCCCAAGANGTATTTCGACAAACTACT 167
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      AAGAAGATCAAAGAGCGGAGGGAGGCAAGGCAAGCCCAAGAGGTATTTCGACAAACTACT 1020
consensus_14471#2      ------------------------------------------------------------
                                                                                   

consensus_14471#1      GATGAAGTTACAGATGATCAGTCTAGCGATGAANANGCTGGTG-AAATGGGAGACGGG-C 225
consensus_14471#3      ------GTTTCANACGATCAGTCTAGCGATGAANAGGCTGGTG-AAATGGGANACGGGGC 53
consensus_14471#0      GATGAAGTTACAGACGATCAGTCTAGCGATGAAGAGGCTGGTG-AAATGGGAG-ACGGGC 1078
consensus_14471#2      ----------------------------------AGGGTGGTGGAAATGGGAGGACGGGC 26
                                                         * * ***** ********    ** *

consensus_14471#1      AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 284
consensus_14471#3      AACTATGTGTTANATGCTTAAGGAAAAGAAGGAAGGCNAGCTTTTAATCCTTGTGGTCAC 113
consensus_14471#0      AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 1137
consensus_14471#2      AACTATGTGTTATATGCTTAAGGAAAAGAAGGAAGGCA-GCTTTTATTCCTTGTGGTCAC 85
                       ************ ************************  ******* *************

consensus_14471#1      CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 344
consensus_14471#3      CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 173
consensus_14471#0      CTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGTGCCCT 1197
consensus_14471#2      CTTGTCTGGTGGTGCAAATGGGCACTGATTGTGGAACGTCAGTTTGACCCATTGTGCCCT 145
                       ******** ** ******** *********************** ***************

consensus_14471#1      ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATG 404
consensus_14471#3      ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACNACAANTGAGGCTTCTTGATG 233
consensus_14471#0      ATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATG 1257
consensus_14471#2      ATGTGTCGGCAAGACATCCGATACAGGATAAGGATCTACGACAATTGAGGCTTCTTGATG 205
                       ************************* ************* **** ***************

consensus_14471#1      TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCANATTGTCTGCGAGCCTGAANACC 464
consensus_14471#3      TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 293
consensus_14471#0      TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 1317
consensus_14471#2      TTTTGCTGATAACCCTTCGACACTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACC 265
                       ************************************* ****************** ***

consensus_14471#1      TCAACTGATCATCCTGCGTGCACTANTCTAANCTACTTGGCTAACAAAACTATGTTNCCC 524
consensus_14471#3      TCAACTGANCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTNACAAAACTATGTTACCC 353
consensus_14471#0      TCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCC 1377
consensus_14471#2      TCAACTGATCATCCTGCGTGCACTAGTCTAAGCTACTTGGCTAACAAAACTATGTTACCC 325
                       ******** **************** ***** ********** ************* ***

consensus_14471#1      TNAATTTNGTGTNTATNTNTNACGTGTTANTCCCTCCCCANNAANAACTCNTNTNGGGCN 584
consensus_14471#3      TGAANTTTGTGTATATATATGACGTGTTAGTCACTCCCGGGGGAAAAAAAAAAAAAAA-- 411
consensus_14471#0      TGAATTTTGTGTATATATATGACGTGTTAGTCACTCCC--AGGAGAACTCATATGGG-CA 1434
consensus_14471#2      GGAATTTTGTGTATATATATGACGTGTTAGTCACTCCC--AGGAGAACTCATATGGG-CA 382
                         ** ** **** *** * * ******** ** *****     * **             

consensus_14471#1      NANATCNCCCGGNATNCTTTNCNTNNTCCCCATNNAAANCCTNTTNCTNNCCNNNCTGCC 644
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      GAGATCACC--GGATACTTTTCATAGTCGC--ATAGAATCCTGTAGCTAGCCAAACTGCC 1490
consensus_14471#2      GAGATCACC--GGATACTTTTCATAGTCGC--ATAGAATCCTGTAGCTAGCCAAACTGCC 438
                                                                                   

consensus_14471#1      CNNAANTCCTTNAA---------------------------------------------- 658
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      AGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCT 1550
consensus_14471#2      AGAGTCATGAGCTGACGCCTATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCT 498
                                                                                   

consensus_14471#1      ------------------------------------------------------------
consensus_14471#3      ------------------------------------------------------------
consensus_14471#0      CCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTGCCGCTAGCAAAAGTATGATGGT 1610
consensus_14471#2      CCCTTCTCATGTCTGTGCATTCTGTAAAGATGAAGG-GCCGCT----------------- 540
                                                                                   

consensus_14471#1      --------------------------
consensus_14471#3      --------------------------
consensus_14471#0      TTCGGATTTTTAAAAAAAAAAAAAAA 1636
consensus_14471#2      --------------------------