cluster # 14479

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Oryza sativa
cluster # 14479 cluster # 14479 Sequences # 16 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14479#0 length = 1989 sequences # 14

consensus_14479#1 length = 227 sequences # 1
consensus_14479#2 length = 138 sequences # 1

consensusID : consensus_14479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1989
fasta sequence

                              [CCGGAATTTCACGCGCACCCTCCCACTCCACACTCTCCTCCCAAAAATTTCCCCCCCCTAAAACCCTAGCTTAGCTCCCCCCGCGCGCCCATGGCCTCCGACGCCAAGCCCGACTCCCCGCCCGCCGGCGTCGACCCCCCGCCGCCCAAGGAGGAGGCGAAGGCGGAGAAGGAGGGGGAGGGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAGAAGGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGGAAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCAATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAACCTGATGAGCCTCCAGCAAAGAAAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAAGAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCTTCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTCAAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT-A-AAACAGGTGAA-TTTGGAATTTTTGGTTCTTGTGTCAAAAAAAAAAAAAGGG]

[+] EMBL AK067886             [CCGGAATTTCACGCGCACCCTCCCACTCCACACTCTCCTCCCAAAAATTTCCCCCCCCTAAAACCCTAGCTTAGCTCCCCCCGCGCGCCCATGGCCTCCGACGCCAAGCCCGACTCCCCGCCCGCCGGCGTCGACCCCCCGCCGCCCAAGGAGGAGGCGAAGGCGGAGAAGGAGGGGGAGGGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAGAAGGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGGAAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCAATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAACCTGATGAGCCTCCAGCAAAGAAAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAAGAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCTTCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTCAAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT A AAACA                                               ]
[+] EMBL CB657288             [                                                                                                                                                                      AGAAGGAGGGGGAGGGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAGAAGGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGGAAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCATGCGACTGCTGAAGGCGCTTCTGATGGGAAGACAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB657029             [                                                                                                                                                                      AGAACGTGGGGGAGGGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAGAACGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGGAAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCAATGGGTGAGGAAGATGATGACGATTCTGAAGCAAAAGATAATGCTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB619939             [                                                                                                                                                                                                                                                             AGCCCCCTTACAACACCCCCACCATCGAGAGGCCCTCCAGGGAGAGGAAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGGTTCTGAGGATGCATCAATGGGTGAGGAAGATGATGAGGATTCTGAAGCAANAGATAATGCTGGGAGTGATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA764431             [                                                                                                                                                                                                                                                                                                                   TCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCCGCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTATCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAATCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGACAATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAGTTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGGAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGGTTCTGAGGATGCATCAATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAACCTGATGAGCCTCCAGCAAAGAAAAAGGCGACAGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK058422             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGTTTCCAGAGCAGCCACAAAGAAGGAGGAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTTCTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCGACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAAGCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCAATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAACCTGATGAGCCTCCAGCAAAGAAAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAAGAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCTTCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTCAAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU030959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGGGAGTGATGAAGAACCTGATGAGCCTCCAGCAAAGANAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAAGAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCTTCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTCAAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB657030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTCAAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT A AAACAGGTGAA TTTGGAATTTTTGGT                         ]
[-] EMBL CB657289             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGTAA AAACA GCGAATTTTGGAATTTTTGGTTCTTGTGTCAAAAAAAAAAAAAGGG]
[-] EMBL CB633276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCAGATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTGGGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT ATTCAAAGG   A  TTGGAATTTTTGGTTCTTG                    ]
[-] EMBL CB626641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTGAACAATAAGGCACGCAAGAAGGATGCTGCCAAGCCACCCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGCCCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCAGATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTTTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACCCCCCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTTTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT A AACCAGAAG A TTTGGAATTTTTGGT                         ]
[-] EMBL CB619940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGCCAAGACAACCAATAAAAATAAAGGAAAAGGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAATTCAGCGGACCAGATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTTTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACCCCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTGGGTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT A AAAC GGGGAA TTTGGAATTTTTGGTTC                       ]
[+] EMBL AU030958             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTCAAAGGAAGATGCTGATGNTGACGAGAAGTAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTANCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT A AAACA GTGAA TTTGGAAaaaa                             ]
[+] EMBL AA750182             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTT                                                                                                                                                                          ]




>consensus_14479#0
CCGGAATTTCACGCGCACCCTCCCACTCCACACTCTCCTCCCAAAAATTTCCCCCCCCTA
AAACCCTAGCTTAGCTCCCCCCGCGCGCCCATGGCCTCCGACGCCAAGCCCGACTCCCCG
CCCGCCGGCGTCGACCCCCCGCCGCCCAAGGAGGAGGCGAAGGCGGAGAAGGAGGGGGAG
GGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAG
AAGGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGG
AAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCC
GCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTA
TCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAA
TCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGAC
AATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAG
TTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAG
GAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTT
CTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCG
ACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAA
GCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCA
ATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAA
CCTGATGAGCCTCCAGCAAAGAAAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAA
GAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCT
TCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTC
AAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAG
GCTTCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCATTG
AACAATAAGGCACGCAAGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAAGGA
AAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTTAGT
GACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAATTA
GGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATTGAG
GAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGATGAC
AAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAGTAA
TTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGC
CCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGAACT
GGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTTGTT
GTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGT
TATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTC
CTTCCATTTATCCATGTAAAACAGGTGAATTTGGAATTTTTGGTTCTTGTGTCAAAAAAA
AAAAAAGGG

consensusID : consensus_14479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [ACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGTAAAACAGTGAATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA]

[+] EMBL AU058341             [ACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGTAAAACAGTGAATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA]




>consensus_14479#1
ACACACCTAGTTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTA
CAATAGCTGTGCTGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATA
ATTCTTTGCCTGTTCCTTCCATTTATCCATGTAAAACAGTGAATTTGGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA

consensusID : consensus_14479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [AGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAGGATGAAGGAAAAGATGGCCAGAACATAATTCTGGTCATTGAACATAAGGCACCCCCAGAAGGATGCTGCCAAGACAAAAAAAAAAA]

[+] EMBL BI803689             [AGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAGGATGAAGGAAAAGATGGCCAGAACATAATTCTGGTCATTGAACATAAGGCACCCCCAGAAGGATGCTGCCAAGACAAAAAAAAAAA]




>consensus_14479#2
AGAGTGATGTTACTGTAGATAAAACCACCAAGAAGGCTTCTAAATCCAAAAGGATGAAGG
AAAAGATGGCCAGAACATAATTCTGGTCATTGAACATAAGGCACCCCCAGAAGGATGCTG
CCAAGACAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14479#0      CCGGAATTTCACGCGCACCCTCCCACTCCACACTCTCCTCCCAAAAATTTCCCCCCCCTA 60
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AAACCCTAGCTTAGCTCCCCCCGCGCGCCCATGGCCTCCGACGCCAAGCCCGACTCCCCG 120
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      CCCGCCGGCGTCGACCCCCCGCCGCCCAAGGAGGAGGCGAAGGCGGAGAAGGAGGGGGAG 180
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GGGGAGGAGCCGCAGTCGGGGGGGCGGAAGCGCGGGCGGCGGAAGAAGGGGGAGGCGGAG 240
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AAGGAGAAGGAGAAGCCCCCGCCCGCCACCCCCACCATCGAGAGGCCCTCCAGGGAGAGG 300
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AAGACCGTCGAGCGCTACTCCGAGCTCGCCCCCCGCGTCACCCCCGCCAAGAAGTCCCCC 360
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GCCATTCTCCAGGGCTCTGGATCGAAGCTGAAGGACATTCCCAACATTCAATTCAAACTA 420
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TCAAAAAGAAAGGCAGACGAGAACCTGCAAAGTCTTCATGTTTTAATGTATGGAAGAAAA 480
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TCAAATGTCCATTTCTTGAAGAGAAACATATCCCAATTTTCTGGTTTTGTTTGGACTGAC 540
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AATCAGGAAAAACAAAGGACCAGGATAAAGGAAAAGCTTGACAAATTTAACAAGGAGAAG 600
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TTGCTGGATTTTTGTGAAATCCTTGATATACATGTTTCCAGAGCAGCCACAAAGAAGGAG 660
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GAAGTCTCTGCCAAATTACTGGAATTTTTGGAGTCCCCTTGCATCACTAGAGATGTTGTT 720
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      CTCACTGATGATAAGAAAGGGAAGAAACGTGGAAGGAGATCTAAAGGAAATGGCCAGGCG 780
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      ACTGCTGAAGGCGCTTCTGATGGGAAGAAAAGGAGAAAGAGTCGAAAGCAATCAACTGAA 840
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GCTGCTAAAGAGAATGACGATGAAGACGATGAGGGTCCTGCTGATTCTGAGGATGCATCA 900
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      ATGGGTGAGGAAGATGATGAGGATTCTGAAGCAAAAGATAATGCTGGGAGTGATGAAGAA 960
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      CCTGATGAGCCTCCAGCAAAGAAAAAGGCAACAGATGATAAACAAACAAAAAAGGCAAAA 1020
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GAAAAGGATGCGACTGCCAAGAAGGCTTCTACAAGACCTGCAAAAGGTGTGTCTAAGCCT 1080
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TCTCAAGACACTGAAGAAGATGATGAGCCAGAAGTTGAGTTAGAAAGCAAAAAGGTTGTC 1140
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      --------------------------ACACACCTAGTTGTTGTGCTTGACTTTGGTGTGA 34
                                                                                   

consensus_14479#0      AAAAAAGTCTCAAAGAGTTCAAAGGAGAGTGATGTTACTGTAGATAAAACCACCAAGAAG 1200
consensus_14479#2      -------------------------AGAGTGATGTTACTGTAGATAAAACCACCAAGAAG 35
consensus_14479#1      CTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTT-ATAACTTTGCTTAGGTA 93
                                                * * *     * ****  ****     *  **   

consensus_14479#0      GCT--TCTAAATCCAAAAAGGATGAAGGAAAAGATGGCCAGAACAATAATTCTGGTGCAT 1258
consensus_14479#2      GCT--TCTAAATCCAAAA-GGATGAAGGAAAAGATGGCCAGAACA-TAATTCTGGT-CAT 90
consensus_14479#1      GCTAGCCTGACTGTAATATGCA-GAATAATTCTTTGCCTGTTCCTTCCATTTATCCATGT 152
                       ***   ** * *  ** * * * ***  *     ** *     *    ***        *

consensus_14479#0      TGAACAATAAGGCACGCA-AGAAGGATGCTGCCAAGACAACCAATAAAAATAAAGGAAAA 1317
consensus_14479#2      TGAACA-TAAGGCACCCCCAGAAGGATGCTGCCAAGACAAAAAAAAAAA----------- 138
consensus_14479#1      AAAACAGTGAATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 212
                         **** * *         * **  *       ** * **  ** ****           

consensus_14479#0      GGAAAAGGCAGCACAGAGGCTGGGGCAGCCCCAACCACTGAAGAGCTGCATGCTGTTGTT 1377
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      AAAAAAAAAANAAAA--------------------------------------------- 227
                                                                                   

consensus_14479#0      AGTGACATATTGAAGGAAGTTGACTTCAATACGGCGACATTGGCAGATATTCTTCGGCAA 1437
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TTAGGTACTCATTTTAAGATGGACCTCATGGATAGGAAATCAGAGGTGAAACACATTATT 1497
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GAGGAAGTAATAAATAGTATGTCTGATGATGAGGAAGGTGAGGAAGACAATGCTGAAGAT 1557
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GACAAAGACAAAAATGCTAAGGAGGAAAATTCAAAGGAAGATGCTGATGGTGACGAGAAG 1617
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TAATTCAGCGGACCACATGTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCT 1677
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTACAATGAGGGCACCGCAACAATGA 1737
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      ACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAGTT 1797
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      GTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGC 1857
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TGTTATAACTTTGCTTAGGTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTG 1917
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      TTCCTTCCATTTATCCATGTAAAACAGGTGAATTTGGAATTTTTGGTTCTTGTGTCAAAA 1977
consensus_14479#2      ------------------------------------------------------------
consensus_14479#1      ------------------------------------------------------------
                                                                                   

consensus_14479#0      AAAAAAAAAGGG 1989
consensus_14479#2      ------------
consensus_14479#1      ------------