These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1417 fasta sequence [TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACTCCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGGAGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTTCTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC-AATCAACTCTGATCTATAAT-GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG-TAGAATAAGTTGTTGTACCAAAAAAACTTGTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC] [+] EMBL AK063760 [TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACTCCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGGAGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTTCTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGGGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCCCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC] [+] EMBL CB666535 [ AAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAAATC ACTCTGATCTATAATGGTCCCCTC AGAAAGCATTCTCG ] [+] EMBL CB666537 [ AAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGA ] [-] EMBL CB666538 [ TGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTTTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATTTTCAACTCCAAGCCTTGCAAGTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGATGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATTTATAAT GTTCCCTCAAGAAAGCATTTTTGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATCCTCAAAGGGAGGAGCAGAAATG TAGAATAAGTTGTTGTCCCTTAAAg ] [+] EMBL CF322896 [ CTTGAAGAGGCTATAAGGATAACCTTTCTGATGCGGAAATGCTTGCCAACAAGGCACAGGCTGCTCAGCGGCGCAAGATGCTAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAGAGCATTCTCGTCTATATACT ] [-] EMBL CB650607 [ TAAGCTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATAGGAAGGAGCAGAAATG TAGAATAAGTTG TGTAC ] [-] EMBL CB629816 [ CTTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAACAGATGTACTGCTGCTGCCCTCTGATATCTGTATTGCAGATAGTAGACATATACACATATGAAAGGGCAGAAATG TAGAATAAGT ] [+] EMBL CF303140 [ TTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATT ] [+] EMBL CF304138 [ TTTCTGATGCGGAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGT ] [-] EMBL CB668282 [ AAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGGAGGAGCAGAAATG TAGAATAAGTTG TGTAC ] [-] EMBL CB666536 [ GGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTACCAAAAAAAaaga ] [+] EMBL BM421969 [ CCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTAC AAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCCATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGACATGCTAGAATAAGTTGTTGTACCAAAAAAA ] [+] EMBL BM037974 [ ATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGC AATCAACTCTGATCTATAAT GTTCCCTCAAG AAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCC ATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATG TAGAATAAGTTGTTGTA AAAAAAA ] consensusID : consensus_14481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTCTCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTACTAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCTATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA] [+] EMBL CB000579 [CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTCTCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTACTAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATCATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCTATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA] consensusID : consensus_14481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [AGTTAAGGNGAGACCACCCAGNGCACAAACTTTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTCCCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCAGCCTTGCAACTACCCTCCCCCGCGAGAGAATGTGCCGGACCATCTGCACGACGCATACCGGTATAGGGACTCCAGCTGATCCCTCTCTGCAGCCTGAATGCTACAAGCCCGTCCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATCACTCTGATCTATATGTTCCCTCAAGAAGCATTCTCGTCTATATACTGGTGGAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCAAAAAAAAAAAAAA] [+] EMBL AU029490 [AGTTAAGGNGAGACCACCCAGNGCACAAACTTTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTCCCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCAGCCTTGCAACTACCCTCCCCCGCGAGAGAATGTGCCGGACCATCTGCACGACGCATACCGGTATAGGGACTCCAGCTGATCCCTCTCTGCAGCCTGAATGCTACAAGCCCGTCCAATGGCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATCACTCTGATCTATATGTTCCCTCAAGAAGCATTCTCGTCTATATACTGGTGGAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCAAAAAAAAAAAAAA] consensusID : consensus_14481#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CCGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAACGGACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANNTTGCAACTACCCTCCCCCGATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCACAACGCATACGTATAGGACTCAAGCTTGATCTCCTNNNNCGT] [+] EMBL AA751130 [CCGCCAGAGCACAAACTATTCCTGAAAACACCATCAGGTGGGTCATGGGCCCAAACGGACCGTGGTTTCATTCCCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANNTTGCAACTACCCTCCCCCGATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCACAACGCATACGTATAGGACTCAAGCTTGATCTCCTNNNNCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 TTGGCATCTTCCCGAGACAAGAAAACCAAAAAGGAGAAGTCAATTGATGACGCGCTAACT 60 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 CCAGAACAACCAGCCAAAGTTCACAGGGAACCATCTTCAGATCCTGTCCGGAAGAGTAGG 120 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 AGGATTGCTAAGAAATCCATCTTGGACAGTGAATTAGATGAGGACTATGATACAAATGTT 180 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 CTTGATGATTTTGGAACTTCTGAAGGTGTGGAAGTCCATACTCGTGAGCCTGCAAAAAAA 240 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 ACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAAGAGCACATCATAC 300 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 GAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGG 360 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 GAATCTACTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCA 420 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 CAAAACAGGAAGCAGAAAGCAGTCACTGAATCACCTGCTAATGTAAGAAGCGAGCCTCTG 480 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 -CGAGGGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAA 59 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 ACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAACAGTGCTATTGAG 540 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 GCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAGAAAGAAGAAAGAAAGCAAAAG 119 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 TTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCG 600 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 GAGCGAGAAGATAAGGTTTATTGCATCATTCGATCATGCTGTTTTTGTACCCTTATTTTC 179 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 GAAATGCTTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCT 660 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 TCTAATGCGTTTTAGTACCCTTATCAATAATAGTACCCTTATCAATGTATCTTCTGCTAC 239 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 ACTAAAGAAAGCGAGGCTGAAGCTATAAGGAAAATTTTGGGCCTGGATTCTGAGAAGAAG 720 consensus_14481#2 ------------------------------------------------------------ consensus_14481#1 TAGCTTCTGAACTAGACTCTTACTTCCCCCTTCCAGGAGAGAGCAGCCAGAGCACAAACT 299 consensus_14481#3 -------------------------------------------CCGCCAGAGCACAAACT 17 consensus_14481#0 AAAGAAGAAAGAAAGCAAAAGGAGCGAGAAGATAAGGAGAGAGCAGCCAGAGCACAAACT 780 consensus_14481#2 -----------------------------AGTTAAGGNGAGACCACCCAGNGCACAAACT 31 * **** ********* consensus_14481#1 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACC-GTGGTTTCATTC 356 consensus_14481#3 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAACGG-ACC-GTGGTTTCATTC 73 consensus_14481#0 ATTCCT--GAAAACACCATCAGGTGGGTCATGGGCCCAAAGGGCACC-GTGGTTTCATTC 837 consensus_14481#2 TTTCCNTGGAAACCCCCATCAGGTGGGTCCTGGGNCCCAAGGGCCCCCGTGGTTTCATTC 91 **** **** * ************** **** ** ** ** ** ************ consensus_14481#1 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCG 416 consensus_14481#3 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAANN-TTGCAACTACCCTCCCCCG 132 consensus_14481#0 CCGGAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCG 897 consensus_14481#2 CCGGAAGAAGTAGGCTTCCCCAGCATCTTCAACTCCA-GCCTTGCAACTACCCTCCCCCG 150 *************** * ******************* ******************* consensus_14481#1 C-----GAGAGAAATG-----TGCCGGACCATCATGCACGAACGCATACCGGTATAGGGA 466 consensus_14481#3 ATCGTAGAGAGAAATGGTGATCCGTGATCCATCATGCAC-AACGCATAC--GTATAGGA- 188 consensus_14481#0 C-----GAGAGAAATG-----TGCCGGACCATCATGCACGAACGCATACCGGTATAGGGA 947 consensus_14481#2 C-----GAGAGAA-TG-----TGCCGGACCATC-TGCACGA-CGCATACCGGTATAGGGA 197 ******* ** * ***** ***** * ******* ******* consensus_14481#1 CTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTC-AATGGCAACG 525 consensus_14481#3 -CTCAAGCTTGATCTCCTNNNNCGT----------------------------------- 212 consensus_14481#0 CTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTC-AATGGCAACG 1006 consensus_14481#2 CTCCA-GCTGA---TCCCTCTCTGCAGCCTGAA-TGCTACAAGCCCGTCCAATGGCAACG 252 ** *** *** * consensus_14481#1 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCT 585 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCT 1066 consensus_14481#2 CTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCATC--ACTCTGATCT 310 consensus_14481#1 ATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGAT 645 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 ATAATGTTCCCTCAAGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGAT 1126 consensus_14481#2 ATA-TGTTCCCTCAAGAA-GCATTCTCGTCTATATACTGGTGGAA-TAAGATAGGATGAT 367 consensus_14481#1 CATCAGCCGCGGAGATGCACATCTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 705 consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 CATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 1186 consensus_14481#2 CATCAGCCGCGGAGATGCACATTTTTGGTTGAGTTGATAGAAAGATACAGCTGTCCAATA 427 consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 AGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGT 1246 consensus_14481#2 AGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCAACCTGT 487 consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 TTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGT 1306 consensus_14481#2 TTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGT 547 consensus_14481#1 ------------------------------------------------------------ consensus_14481#3 ------------------------------------------------------------ consensus_14481#0 AGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAAAAACTT 1366 consensus_14481#2 AGACATATACACATATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTT 607 consensus_14481#1 --------------------------------------------------- consensus_14481#3 --------------------------------------------------- consensus_14481#0 GTGTTTGTTCACTTCTTCATTCAGTTTATGCACACACTCGGCCATCATGTC 1417 consensus_14481#2 GTGTTTGTTCAAAAAAAAAAAAAA--------------------------- 631 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||