These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2065 fasta sequence [TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGAGCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAGAGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTGTATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTTTTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAATTTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTGTGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATGGTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT-GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG-AAAGCA-TCT-CCGTGG-CATT--GA-CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG-CCTGATGGATTCCCAACGAT-CCTC-TTTTATCCAG-CAGGAAAGAAAAGTTTTGAG-CCTATTACTTTTGAGGGGGACCGTA-CGGTGGTGGAGATGTACAAGTTTATCAAG-AAGCA-CGCTAGCATCCCTTTCAAACTGAAGC-G-GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG-G-GGGAGA-GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA-ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071514 [TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGAGCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAGAGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTGTATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTTTTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAATTTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTGTGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATGGTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG AAAGCA TCT CCGTGG CATT GA CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGA ] [+] EMBL CB656613 [ CAGTGCGCAACGGAGGAAGCAACGATGCGCTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGCCTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCCCCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCCCAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAGGACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTCGTGGGTCAACAAGAAGCTAGCTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGGACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCNCATCCTGATGTTGCCAAGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAAC AGAGGAGGAGAAGTTGACCTT ] [-] EMBL CB656614 [ AGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGAT GCCCTTTTGGAGATATATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGG AAAGCA TCT CCGTGG CATT GA CTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAga ] [-] EMBL CA759908 [ AACAACCTAGGCTAGATTG TTTGGGTGAATCCAAAAATGGCCCCTTGGGAGATATATGCGCCCTGGTGGGGGCATTGTCAGGAACTGGGGCCTCCCTACAACAAGCTAGGAAAAGCA TTT CCGTGG CAGT GG CTCCCTGGTGATAGCTAAAATGGATGGCGCTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTCCAAGTTTATCAAG AAGCC CGCTAGCATCCCTTTCAAACTGAAAC G GCCGGGTTTGTCAGCAACGAAAACAGAGAAGGATCAGAGCCCAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI807335 [ gatAAGCATTCTGCCGNGGCCAGTGGGACCTCCC TGTAATAGCT AAAT GAT GCACT CCAATGAGCATCCACGTGCAAA CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTANTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAGTAAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGATGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGA CGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGACNAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGA GGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATCAAA C AACGAAAaaaa ] [+] EMBL BI799387 [ TAGCTAAAATGGATGCCACTGCCAATGAGCATCCACGTGCCAAGCCCTGATGGATTCCC ACGAT CCTC TTTTATCCAGCCAGGAAAGAAAAGTTTTGAGCCCTATTACTTTTGAGGGGGACCGTACCGGTGGTGGAGATGTACAAGTTTATCAAG AAGCACCGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCCAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCCAACGAAACGGCTTCGATAAAAAAAAAA ] [+] EMBL BI798845 [ TAGCTAAAATGGAT GCACTGCCAATGAGCATCCACGT CAAAG CCTGATGGATTCCCAACGATGCCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAAC AGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAACCCAACGAAACGGCTTCGATAAAAAAAAAA ] [+] EMBL BI798444 [ TAGCTAAAATGGATGGCACTGCC ATGAGCATCCACGTGCAAAG CCTGATGGATTCCC ACGAT CCTCGTTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTAC AATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGT CAACCTTTGAACAAGGCATACGACGCTCTCTAGAAAAGGCTGTTTCTCCTTATGTATGCGAGGGCCTGAGGGGCA CAGAAAGGAATCCCAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAACC ACGAAACGGCTTCGATAAAAAAAAAA ] [+] EMBL BI798221 [ AATGGATGCCACT CCAATGAGCATCCACGTCCAAA CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGA CCTATTACTTTTGAGGGGGACCGTA CGGTGGTGGAGATGTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGG G GGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCA ACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCC AAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAA CCAACGAAACGGCTTCGATAAAAAAAAAA ] [+] EMBL AA751291 [ AGCATCCACGTGCAAAG CCTGATGGATTCCCAACGAT CCTC TTTTATCCAG CAGGAAAGAAAAGTTTTGAG CCTATTACTTTTGAGGGGGACCGTA C GTGGTGGAGATGTACAAGTTTATCAAG AAGCA GCCTAGCATCCCTTTCAAACTGAAGC G GCCGGATTCGTCAGCAACGAAAACAGAGAAGGAT ] [+] EMBL AA751028 [ GTACAAGTTTATCAAG AAGCA CGCTAGCATCCCTTTCAAACTGAAGCTGTGCCGGATTCGTCAGCTTCGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGTGTGGGAGA GGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTA ] consensusID : consensus_14484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNCCCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCCAGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAAGGCTACAACGGGGCAAGAACAAGGAAGGCATCGGGGCGGGGGGAAAAAGAAGCTAGCTTCCGGGGGGCAAAAAATAACCACGGTGAAAAGGGGGGAAAAAAACTTACCGGGGGGGCAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCGGGCTCCCAGGGGGGAAAAAGGTAAAAATTTCACAAGATTCCAATCCGGGGGGGGGAAGGTTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA] [+] EMBL BE040321 [CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCCCGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCACCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGCCAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTACGCCCCCTGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNCCCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCCAGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAAGGCTACAACGGGGCAAGAACAAGGAAGGCATCGGGGCGGGGGGAAAAAGAAGCTAGCTTCCGGGGGGCAAAAAATAACCACGGTGAAAAGGGGGGAAAAAAACTTACCGGGGGGGCAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCGGGCTCCCAGGGGGGAAAAAGGTAAAAATTTCACAAGATTCCAATCCGGGGGGGGGAAGGTTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA] consensusID : consensus_14484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence [AATACCTATAAGGACAAAGTGGGTCNCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAAATGATGCATGCCATGGCATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAAAGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTATCAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTA-G-CTTGGACGATGTGCATGTTGAGATGAACGAA-TTGAATCGAATCGAAT-GGAATAAAAGCAAACGAAACGGCTT-CGATAAAAAAAAAA] [-] EMBL AA753291 [AATACCTATAAGGACAAAGTGGGTCNCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAAATGATGCATGCCATGGCATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAAAGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTATCAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGCTCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTA G CTTGGACGATGTGCATGTTGAGATGAACGAA TTGAATCGAATCGAAT GGAATAAAAGCAAACGAAACGGCTT CGATAAAAAAAAAA] [+] EMBL BI800068 [ GGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGAGAGAGTATTCCGGTAAGGAGTTACGCCTTGGACGATGTGCATGTTGAGATGAACGAACTTGAATCGAATCGAATGGGAATAAAAGCAACCGAAACGGCTTGCGATAAAAAAAAA ] consensusID : consensus_14484#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [GAGCACAGCTTCAACTAATTTGAGGGGGGAGACGCCAGTTCCGGTACAATGTTCAAGGATGAGTTGTAGTCTTGTAGATCGCCATTGGTGCAACCTCTTGGACAGAGGCAAACGACGCTCTCTAGAAAAGGCTGTTCTCATTTTTATGCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAGTTGGTTTTACTTTTAGAGAGAGTATTCCAGGT] [+] EMBL BI795290 [GAGCACAGCTTCAACTAATTTGAGGGGGGAGACGCCAGTTCCGGTACAATGTTCAAGGATGAGTTGTAGTCTTGTAGATCGCCATTGGTGCAACCTCTTGGACAGAGGCAAACGACGCTCTCTAGAAAAGGCTGTTCTCATTTTTATGCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAGTTGGTTTTACTTTTAGAGAGAGTATTCCAGGT] consensusID : consensus_14484#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CTTGGTTATTGGACACCTTTATTGTTTTTATCCTTTTTACATGCAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTG] [+] EMBL AA750251 [CTTGGTTATTGGACACCTTTATTGTTTTTATCCTTTTTACATGCAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14484#0 TCGAAAATTAAAAAAAGAGAGAGAAATAAAAGGGGATCGATCCGCTCTTGTAGTTGTAGA 60 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 GCGTTCCATTCCACTTCCACAGCAGTGGACTCAGTGAGCAACGGAGGAAGCAACGATGCG 120 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CTCCCGATCTCTCCTCCTCGTCGCCCTCGCCACCCTTCTTCTCCACGCCTCCGCCTCCGC 180 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CTCCGACGACGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCC 240 consensus_14484#1 ---------CGACCTCGACTACCTCATCGACAACGCCGACGACATCCCCGCCAACGACCC 51 consensus_14484#2 -------------------------------AATACCTATAAGGACAA----AGTGGGTC 25 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGAC---CTCTTCCA 297 consensus_14484#1 CGACGGCTGGCTCCAGGAGGGCTCCCCCGACGACGACGACGACGACGACGACCTCTTCCA 111 consensus_14484#2 NCNCGTGCGCNTTTAGAATATGTCCCCGGNTGCGGATTGGCANGAGTAA-ATGATGCATG 84 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGC 357 consensus_14484#1 CCATGGCCAGGCCCAGGACCATCCCATAGATGAGACCCACGTCTTCCTCCTCTCCGCCGC 171 consensus_14484#2 CCATGGC---ATCCAAGTGCAAGCCTGATGGATTCCAACGATCTNTTTATCCCACAGGAA 141 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTAC--GCCCCC 415 consensus_14484#1 CAACTTCTCCGACTTCCTCGCCTCCCACCGCCATGTCATGGTCGAGTTCTAC--GCCCCC 229 consensus_14484#2 AGAAAGTTTTGACCTATTACTTTTGAGGGGACGTACGGTGGTGGAGATGTACAAGTTTAT 201 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGCCGCCGCCGCCGACCTCTCC 475 consensus_14484#1 TGGTGCGCCCATTGCCAGGCGCTCGCCCCAGACTACGCCGNCGNCGNCGNCGACCTNTNC 289 consensus_14484#2 CAAGAAGCACGNTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAAC 261 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CCTCTTGCCCATCAAGTCGCCCTCGCCAAGGTCGACGCCACCGAGGACACTGATCTCGCC 535 consensus_14484#1 CCTCTTGGCCATCAAGTCGCCCTCGCCAAGGGCGACGCCACCGAGGACACTGATCTCGCC 349 consensus_14484#2 AGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGG---GGAGAGG--AGTTCCG-- 314 consensus_14484#3 ------------GAGCACAGCTTCAACTAATTTGAGGGG---GGAGACGCCAGTTCCG-- 43 consensus_14484#4 ------------------------------------------------------CTTGGT 6 * consensus_14484#0 CAGAAGTACGACGTCCAGGGCTTCCCCACCATCCTCTTCTTCATCGACGGCGTTCCCAAG 595 consensus_14484#1 -AGAAGTACGACGTCCAGGGCTTCCCCACCCATCTCTTCTTAATTGACCGGGTGTCCCAA 408 consensus_14484#2 -----GTACAAATTTCAAGGATGAGTTGTAG---TCTTGTAGAGCGGC--ATTGGTGCAA 364 consensus_14484#3 -----GTACAATGTTCAAGGATGAGTTGTAG---TCTTGTAGATCGCC--ATTGGTGCAA 93 consensus_14484#4 ------TATTGGACACCTTTATTGTTTTTAT---CCTTTTTACATGCAGAGATTTGCTGA 57 ** * * *** * * * consensus_14484#0 GACTACAACGGCGCAAGAACCAAGGAAGCCATCGTGTC--GTGGGTCAACAAGAAGCTAG 653 consensus_14484#1 GGCTACAACGGGGCAAGAAC-AAGGAAGGCATCGGGGC--G-GGGGGAAAAAGAAGCTAG 464 consensus_14484#2 CCT-----TTGAACA-AGGCAA-CGACGCTCTCTAGAA--AAGGCTGTTTC--TTTTTAT 413 consensus_14484#3 CCTC----TTGGACAGAGGCAAACGACGCTCTCTAGAA--AAGGCTGTTCTCATTTTTAT 147 consensus_14484#4 GGATTTCTTAGAGGAAAAGCTCACACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAA 117 * * * * * ** consensus_14484#0 CTCCCGGGGTGCAAAACATCACCACCGTCGACGAGGCGGAGAAGATACTCACCGGGGAGG 713 consensus_14484#1 CTTCCGGGGGGCAAAAAATAACCACGGT-GAAAAGGGGGGAAAAAAACTTACCGGGGGGG 523 consensus_14484#2 G-TATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAAAGTTGGTTTCTACTTTCTAGA 472 consensus_14484#3 GCTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAATCCAA-GTTGGTTT-TACTTT-TAGA 204 consensus_14484#4 TGAAGGAGATGTCAAAATTGTTGTTGGAAAAAAACCTAG-ATCAGATTGTTTTGGATGAA 176 * * * * * consensus_14484#0 ACAAGGCCATTCTTGCCGTCCTCGACTCCCTATCGGGTGCTCACAGTGATGAGATTGCTG 773 consensus_14484#1 -CAAGGGCATTTTTGGCCGGCCCGAATCCCTTTGGGGGGGCCAAGGGGAGGAAATGGCCG 582 consensus_14484#2 --GAGAGTATT-----CCGGTAAGGAGTTAGCTTGGACGATGTGCATGTTGAGATGAACG 525 consensus_14484#3 --GAGAGTATT-----CCAGGT-------------------------------------- 219 consensus_14484#4 TCAAAAG-ATGCCCTTTTG----------------------------------------- 194 * ** consensus_14484#0 CTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCA 833 consensus_14484#1 G-GCTCCCAGGGGGGAAAAAGGTAA-AAATTTCACAAGA-TTCCAATCCGGGGGGGGGAA 639 consensus_14484#2 AATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGCTTCGATAAAAAAAAAA--- 582 consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AGCTTTTTCACCTTGACCCAGCGGCCAAGCGCCCGTCCTTAGTCCTGCTCAAGAAACAAG 893 consensus_14484#1 GG--TTTTAACCTTGGACAAGGGGGAAAGGCCCCCCCTTTA------------------- 678 consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AGGAGGAGAAGTTGACCTTCTATGATGGGCCATTCAAAGCATCTGCAATTGCCGATTTTG 953 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TATCTGCAAACAAGCTTCCGTTGGTCAACACCCTCACACAGGAAACTGCTCCTTCCATTT 1013 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TTGACAATCCAATCAAGAAGCAGATTTTACTATTTGTTGTTGCAAACGAATCGTCGAAAT 1073 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TTCTGCCCATCTTTAAGGAAGCATCAAAATCATTCAAGGGGAAGCTTTTGTTTGTCTTTG 1133 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TGGAGCGTGACAATGAGGAAGTAGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGAC 1193 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AAGAGACCACAGTTCTTGCTTACACTGGGAATGAAGATGCTAGGAATTTTTTCCTTGATG 1253 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 GTGAAATATCGGTAGAGAATATTAAGAGATTTGCTGAGGATTTCTTAGAGGAAAAGCTCA 1313 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CACCGTTCTACAAGTCTGAACCTGTACCTGAATCTAATGAAGGAGATGTCAAAATTGTTG 1373 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TTGGAAAAAACCTAGATCAGATTGTTTTGGATGAATCAAAAGATGCCCTTTTGGAGATAT 1433 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 ATGCACCATGGTGTGGGCATTGTCAGGAACTGGAGCCTACCTACAACAAGCTAGGAAAGC 1493 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 ATCTCCGTGGCATTGACTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATC 1553 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 CACGTGCAAAGCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTT 1613 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TTGAGCCTATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGA 1673 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AGCACGCTAGCATCCCTTTCAAACTGAAGCGGCCGGATTCGTCAGCAACGAAAACAGAGA 1733 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTACAAATTTCA 1793 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 AGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGC 1853 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TCTCTAGAAAAGGCTGTTTCTTTTTATGTATGCGAGGGCCTGAGGGGCAGCAGAAAGGAA 1913 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TCCAAAGTTGGTTTCTACTTTCTATAGAGAGTATTCCGGTAAGGAGTTAGCTTGGACGAT 1973 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 GTGCATGTTGAGATGAACGAATTGAATCGAATCGAATGGAATAAAAGCAAACGAAACGGC 2033 consensus_14484#1 ------------------------------------------------------------ consensus_14484#2 ------------------------------------------------------------ consensus_14484#3 ------------------------------------------------------------ consensus_14484#4 ------------------------------------------------------------ consensus_14484#0 TTCGATAAAAAAAAAAAAAAAAAAAAAAAAAA 2065 consensus_14484#1 -------------------------------- consensus_14484#2 -------------------------------- consensus_14484#3 -------------------------------- consensus_14484#4 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||