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Oryza sativa
cluster # 14487 cluster # 14487       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14487#0 length = 1518 sequences # 13  
consensus_14487#1 length = 297 sequences # 1  
consensus_14487#2 length = 290 sequences # 1  
consensus_14487#3 length = 233 sequences # 1  

consensusID : consensus_14487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1518
fasta sequence
                              [CATTCGATCTTTTGTTACTGGGAAAGAAAGATCTGGAAGTCGTGCTCCTGTTCTCAGAGAGAAATTATTAGATTGCTTATGCACGCCAGTTCCTCAGTCCGTGGCCACCAGTGTACTTGCCAAGAGATATTCTTTTCTGTCTGTTGCTTTAATCGAAATATCTGCACCAAAAATGTCTCCAGCTGAGGAGCAGTACCATGTTAAAATTCTCGATGAACTGCTTGCCAACATGAGCCATCCGTCGGCCCAGATAAGAGAAGCAATTGGTGTGACCATATGTATTGCATGCTCAAATATGCGATTATCTAGGTTATTTGGGCATGGTGATTCTCTAGATGTTTCTGGGGATGTAAGCATGACTGAACAAACAGGGAGTGAGAACTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATCTATCAGTATACAAAATAATATTTCTAAGCAACTGGAGTCAACACCAGATTCAGTAACTGAAAATGGCTTGGACAAGAAAGAGGAGGCTGATGTGAAAAGAATGGAAACGATTTTTCACTTCATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACTCATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAAGTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTATTATGACTATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATCATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACAAATTTGGCAAACAATTGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGCTG-CTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGAC-TTTCGAGATCGGTCATATGCACAAGCTCAGCGT-ATCCTTCATACACGGCA-AAGAGGTGCAAA-GT-CAGGCCACTCT-GTTGCTACTATCCA-TGGT-GCAGTTCTTGCTTTGACGGCTTCAGT-GCTTT-CTGTT-CCATACGACAT-GCCA-AGCTGGCTTCCTAG-TCA-TGTAACTC-TG-CTGGCACGCTTT-ATTCGTGAG-CCCTCTCCCA-TAAAATCAACGGTCACA-AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC-ACAGATAAAGGTTTTTCGTCGTACAAAAAAAGGCACGTAGTATATGTCGAATATGAGCTGAGATTATGAGATACAGTATGTTACAGTCAAAAA]

[+] EMBL CB669824             [CATTCGATCTTTTGTTACTGGGAAAGAAAGATCTGGAAGTCGTGCTCCTGTTCTCAGAGAGAAATTATTAGATTGCTTATGCACGCCAGTTCCTCAGTCCGTGGCCACCAGTGTACTTGCCAAGAGATATTCTTTTCTGTCTGTTGCTTTAATCGAAATATCTGCACCAAAAATGTCTCCAGCTGAGGAGCAGTACCATGTTAAAATTCTCGATGAACTGCTTGCCAACATGAGCCATCCGTCGGCCCAGATAAGAGAAGCAATTGGTGTGACCATATGTATTGCATGCTCAAATATGCGATTATCTAGGTTATTTGGGCATGGTGATTCTCTAGATGTTTCTGGGGATGTAAGCATGACTGAACAAACAGGGAGTGAGAACTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATCTATCAGTATACAAAATAATATTTCTAAGCAACTGGAGTCAACACCAGATTCAGTAACTGAAAATGGCTTGGACAAGAAAGAGGAGGCTGATGTGAAAAGAATGGAAACGATTTTTCACTTCATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACTCATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAAGTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTATTATGACTATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATCATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACAAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU089682             [                                                                                                                  ACTTGCCAAGAGATATTCTTTNCTGTCTGTTGCTTTAATCGAAATATCTGCACCAAAAATGTCTCCAGCTGAGGAGCAGTACCATGTTAAAATTCTCGATGAACTGCTTGCCAACATGAGCCATCCGTCGGCCCAGATAAGAGAAGCAATTGGTGTGACCATATGTATTGCATGCTCAAATATGCGATTATCTAGGTTATTTGGGCATGGTGATTCTCTAGATGTTTCTGGGGATGTAAGCATGACTGAACAAACAGGGAGTGAGAACTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATCTATCAGTATACAAAATAATATTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU067846             [                                                                                                                                                                                                                                                                                                                                                                                CAGGGAGTGAGANCTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATCTATCAGTATACAAAATAATATTTCTAAGCAACTGGAGTCAACACCAGATTCAGTAACTGAAAATGGCTTGGACAAGAAAGAGGAGGCTGATGTGAAAAGAATGGAAACGATTTTTCACTTCATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACTCATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAAGTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTATTATGACTATTCTTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF312007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACTTCATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACTCATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAAGTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTATTATGACTATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATCATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACAAATTTGGCAAACAATGGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGCTGCCTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGAC CTTCGAGATCGGTCATATGCACAAGCTCAGCGT ATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB669825             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATCATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACAAATTTGGCAAACAATTGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGCTG CTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGAC TTTCGAGATCGGTCATATGCACAAGCTCAGCGT ATCCTTCATACACGGCA AAGAGGTGCAAA GT CAGGCCACTCT GTTGCTACTATCCA TGGT GCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CT TT CCATACGACAT GCCA AGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATCAACGGTCACA AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACAGATAAAGGTTTTTCGTCGTACAAAGTCAGGCACGTAGTATATGTCGAATGTGAGCTGAGATTATGAGATACAGTATGTTACA        ]
[-] EMBL CB628931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCAAACTGGCGGATCAGATCTGCATTGTTATCATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACAAATTTGGCAAACAATTGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGCTG CTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGAC TTTCGAGATCGGTCATATGCACAAGCTCAGCGT ATCCTTCATACACGGCA AAGAGGTGCAAA GT CAGGCCACTCT GTTGCTACTATCCA TGGT GCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CTGTT CCATACGACAT GCCA AGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATCAACGGTCACA AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACAGATAAAGGTTTTTCGTTGTACAAAGTCAGGCACGTAGTATATGTCGAATATGAGCTGAGATTATGAGATACAGTAT              ]
[+] EMBL BI810868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           agGACCTCTCTAAGGACGTTTCGAGATCGGTCATATGCACAAGCTCAGCGT ATCCTTCATACACGGCACAAGAGGTGCAAAGGT CAGGCCACTCT GTTGCTACTATCCA TGGTCGCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CTGTT CCATACGACAT GCCACAGCTGGCTTCCTAGCTCA TGTAACTC TGTCTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATC ACGGTCAC  AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTTCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACAGATAAAGGTTTTTCGTCGTACAAAAAAAaa                                                            ]
[+] EMBL BM418534             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGAGATCGGTCATATGCACAAGCTCAGCGTGATCCTTCATACACGGCA AAGAGGTGCAAA GTGCAGGCCACTCTGGTTGCTACTATCCACTGGT GCAGTTCTTGCTTTGACGGCTTCAGTGGCTTTGCTGTTGCCATACGACATGGCCACAGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATCAACGGTCACATAAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTTCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACCAAAAAAaaaa                                                                                ]
[+] EMBL BM038108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATCGGTCATATGCACAAGCTCAGCGT ATCCTTCATAC CGGCA AAGAGGTGC AA GT CAGGCCACTCT GTTGCTACTATCCA TGGT GCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CTGTT CCATACGACAT GCCA AGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATC ACGGTCACC AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTTCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCNCCAGATAAAGGTTTTTCGTCGTAAAAAAAAA                                                              ]
[+] EMBL BI811155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGCACAAGCTCAGCGT AT CTTCATACCCGGC  AAGAGGTGCAAA GT CAGGCCACTCT G TGCTACTATCCA TGGT GCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CTGTT CCATACGACAT GCCA AGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATCAACGGTCAC  AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCAC AGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTTCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC CCAGATAAAGGTTTTTCGTCGTAAAAAAAAAa                                                             ]
[+] EMBL CF331620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCT GTTGCTACTATCCA TGGT GCAGTTCTTGCTTTGACGGCTTCAGT GCTTT CTGTT CCATACGACAT GCCA AGCTGGCTTCCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCC TAAAATCAACGGTCACA AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGGTACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC GCAGATAAAGGT                                                                                 ]
[+] EMBL AU089683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tcCCA AGCTGGCTTCCTAG TCANTGTAACTCTTG CTGNCACGCTTTAATNCGTGAGCCCCTCTCCCATTAAAATCAACGGTCACA AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACAGATAAAGGTTTTTCGTCGTACAAAAAAAaaaa                                                          ]
[+] EMBL AU166265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTAG TCA TGTAACTC TG CTGGCACGCTTT ATTCGTGAG CCCTCTCCCA TAAAATCAACGGTCACA AAAGCCGTCGCCGAATTCAAGCGGACGCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCC ACAGATAAAGGTTTTTCGTCGTACAAAGTCAGGCACGTAGTATATGTCGAATATGAGCTGAGATTATGAGATACAGTATGTTACAGTCAAAAA]


>consensus_14487#0 CATTCGATCTTTTGTTACTGGGAAAGAAAGATCTGGAAGTCGTGCTCCTGTTCTCAGAGA GAAATTATTAGATTGCTTATGCACGCCAGTTCCTCAGTCCGTGGCCACCAGTGTACTTGC CAAGAGATATTCTTTTCTGTCTGTTGCTTTAATCGAAATATCTGCACCAAAAATGTCTCC AGCTGAGGAGCAGTACCATGTTAAAATTCTCGATGAACTGCTTGCCAACATGAGCCATCC GTCGGCCCAGATAAGAGAAGCAATTGGTGTGACCATATGTATTGCATGCTCAAATATGCG ATTATCTAGGTTATTTGGGCATGGTGATTCTCTAGATGTTTCTGGGGATGTAAGCATGAC TGAACAAACAGGGAGTGAGAACTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATC TATCAGTATACAAAATAATATTTCTAAGCAACTGGAGTCAACACCAGATTCAGTAACTGA AAATGGCTTGGACAAGAAAGAGGAGGCTGATGTGAAAAGAATGGAAACGATTTTTCACTT CATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACT CATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAA GTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTAT TATGACTATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATC ATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACA AATTTGGCAAACAATTGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGC TGCTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGACTTTCG AGATCGGTCATATGCACAAGCTCAGCGTATCCTTCATACACGGCAAAGAGGTGCAAAGTC AGGCCACTCTGTTGCTACTATCCATGGTGCAGTTCTTGCTTTGACGGCTTCAGTGCTTTC TGTTCCATACGACATGCCAAGCTGGCTTCCTAGTCATGTAACTCTGCTGGCACGCTTTAT TCGTGAGCCCTCTCCCATAAAATCAACGGTCACAAAAGCCGTCGCCGAATTCAAGCGGAC GCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCT CCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATT TTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTG GATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTT TCGTCGTACAAAAAAAGGCACGTAGTATATGTCGAATATGAGCTGAGATTATGAGATACA GTATGTTACAGTCAAAAA



consensusID : consensus_14487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence
                              [TGACATGGACTGAAGGAGTCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAGGGCAAATTCG]

[+] EMBL CF318452             [TGACATGGACTGAAGGAGTCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAGGGCAAATTCG]


>consensus_14487#1 TGACATGGACTGAAGGAGTCCTTCACGGAAGACGAATTGGAGGTCCTCCGTGATACATCG TCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTC ATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATA TAGTTACATCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAGGGCAAATTCG



consensusID : consensus_14487#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence
                              [ACGCATGTTGACACATGGAGCATCCAAAAGGAGCCCTTCCCGGAAGACGAATTGGAGGTCCTCCGCAAAACATGGTCCTCATGGTCAAACTTTGTTTAAATATAAGGCCCCCAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTAATGAGATTCCCCCCATACTTGGTGGATCATAAACAAATAGTTACATCCGGAAGCTTGGGTTTTATTTCCCCAAATAAAGGTTTTTTGTGGTACAAAGTCAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAA]

[-] EMBL CF312006             [ACGCATGTTGACACATGGAGCATCCAAAAGGAGCCCTTCCCGGAAGACGAATTGGAGGTCCTCCGCAAAACATGGTCCTCATGGTCAAACTTTGTTTAAATATAAGGCCCCCAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTAATGAGATTCCCCCCATACTTGGTGGATCATAAACAAATAGTTACATCCGGAAGCTTGGGTTTTATTTCCCCAAATAAAGGTTTTTTGTGGTACAAAGTCAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAA]


>consensus_14487#2 ACGCATGTTGACACATGGAGCATCCAAAAGGAGCCCTTCCCGGAAGACGAATTGGAGGTC CTCCGCAAAACATGGTCCTCATGGTCAAACTTTGTTTAAATATAAGGCCCCCAAGATTAA TTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTAATGAGATTCCCCCCATACTTGG TGGATCATAAACAAATAGTTACATCCGGAAGCTTGGGTTTTATTTCCCCAAATAAAGGTT TTTTGTGGTACAAAGTCAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAA



consensusID : consensus_14487#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence
                              [TCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTTTCGTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF328138             [TCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTTTCGTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14487#3 TCATACTTTGCTTAGATATAAGGACCACAAGATTAATTTTCAAGTAAATTCATATAGAAT ATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTGGATCATATACATATAGTTACAT CCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTTTCGTCGTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      CATTCGATCTTTTGTTACTGGGAAAGAAAGATCTGGAAGTCGTGCTCCTGTTCTCAGAGA 60
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      GAAATTATTAGATTGCTTATGCACGCCAGTTCCTCAGTCCGTGGCCACCAGTGTACTTGC 120
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      CAAGAGATATTCTTTTCTGTCTGTTGCTTTAATCGAAATATCTGCACCAAAAATGTCTCC 180
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      AGCTGAGGAGCAGTACCATGTTAAAATTCTCGATGAACTGCTTGCCAACATGAGCCATCC 240
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      GTCGGCCCAGATAAGAGAAGCAATTGGTGTGACCATATGTATTGCATGCTCAAATATGCG 300
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      ATTATCTAGGTTATTTGGGCATGGTGATTCTCTAGATGTTTCTGGGGATGTAAGCATGAC 360
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TGAACAAACAGGGAGTGAGAACTGGTCAAAACAGTTGACAGATGGAGCTACTGAATTATC 420
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TATCAGTATACAAAATAATATTTCTAAGCAACTGGAGTCAACACCAGATTCAGTAACTGA 480
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      AAATGGCTTGGACAAGAAAGAGGAGGCTGATGTGAAAAGAATGGAAACGATTTTTCACTT 540
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      CATAATTGCATCGCTGAAGTCTGGGAGATCATCTGTTCTACTGGATGTTATTATCGGACT 600
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      CATCTACCCTGTTCTCTCATTACAGGAAACATCAAACAAAGATTTGTCATTGCTTGCGAA 660
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      GTCAGCTTTTGAGTTGCTGAAGTGGCGTATTTTACAACGGCCTTTTCTTGAAACTGCTAT 720
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TATGACTATTCTTTCTTCAGCCAATGATCCAAACTGGCGGACCAGATCTGCATTGTTATC 780
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      ATATCTCAGGACATTTACGTACAGGCATACATTCATTCTTTCCAGCTCAGAGAAATCACA 840
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      AATTTGGCAAACAATTGAGAAGTTACTTGTGGATAGTCAAGTTGAGGTTAGGGAACATGC 900
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TGCTGGTGTCCTTGCAAGCTTAATGAAGGGCATAGATAAAGACCTCTCTAAGGACTTTCG 960
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      AGATCGGTCATATGCACAAGCTCAGCGTATCCTTCATACACGGCAAAGAGGTGCAAAGTC 1020
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      AGGCCACTCTGTTGCTACTATCCATGGTGCAGTTCTTGCTTTGACGGCTTCAGTGCTTTC 1080
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TGTTCCATACGACATGCCAAGCTGGCTTCCTAGTCATGTAACTCTGCTGGCACGCTTTAT 1140
consensus_14487#2      ------------------------------------------------------------
                                                                                   

consensus_14487#1      ------------------------------------------------------------
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      TCGTGAGCCCTCTCCCATAAAATCAACGGTCACAAAAGCCGTCGCCGAATTCAAGCGGAC 1200
consensus_14487#2      ----------------------------------------------------------AC 2
                                                                                   

consensus_14487#1      -------------TGACATGGACTGAAGGAGTCCTTCACGGAAGACGAATTGGAGGTCCT 47
consensus_14487#3      ------------------------------------------------------------
consensus_14487#0      GCATGCTGACACATGGAGCATCCAGAAGGAGGCCTTCACGGAAGACGAATTGGAGGTCCT 1260
consensus_14487#2      GCATGTTGACACATGGAGCATCCAAAAGGAGCCCTTCCCGGAAGACGAATTGGAGGTCCT 62
                                                                                   

consensus_14487#1      CCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATT 107
consensus_14487#3      ----------------------TCATACTTTGCTTAGATATAAGGACCACAAGATTAATT 38
consensus_14487#0      CCGTGATACATCGTCCTCATCGTCATACTTTGCTTAGATATAAGGACCACAAGATTAATT 1320
consensus_14487#2      CCGCAAAACATGGTCCTCATGGTCAAACTTTGTTTAAATATAAGGCCCCCAAGATTAATT 122
                                             *** ****** *** ******** ** ***********

consensus_14487#1      TTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTG 167
consensus_14487#3      TTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTG 98
consensus_14487#0      TTCAAGTAAATTCATATAGAATATTTTGTATGGCTGATGAGATTGCCTCCATACTTGGTG 1380
consensus_14487#2      TTCAAGTAAATTCATATAGAATATTTTGTATGGCTAATGAGATTCCCCCCATACTTGGTG 182
                       *********************************** ******** ** ************

consensus_14487#1      GATCATATACATATAGTTACATCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---- 223
consensus_14487#3      GATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTT 158
consensus_14487#0      GATCATATACATATAGTTACATCCTGTAGCTTCGGTTTTATTTCCACAGATAAAGGTTTT 1440
consensus_14487#2      GATCATAAACAAATAGTTACATCCGGAAGCTTGGGTTTTATTTCCCCAAATAAAGGTTTT 242
                       ******* *** ************ * *           *       * * ***      

consensus_14487#1      -----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCC 278
consensus_14487#3      TCGTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 218
consensus_14487#0      TCGTCGTACAAAAAAAGGCACGTAGTATATGTCGAATATGAGCTGAGATTATGAGATACA 1500
consensus_14487#2      TTGTGGTACAAAGTCAAA-AAAAAAAAAACCCCAAAAAAAAAAAAAAAA----------- 290
                              * ***   *   *   *  * *     ** *  *                   

consensus_14487#1      GTACCAAAGGGCAAATTCG 297
consensus_14487#3      AAAAAAAAAAAAAAA---- 233
consensus_14487#0      GTATGTTACAGTCAAAAA- 1518
consensus_14487#2      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)