These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence [CCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTANGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTTTTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGGGATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACTCGTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCCACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAAGTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCAAGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCATTCGCGGCATCGATCTTCAGTGGGACTCCAAC] [+] EMBL CA757766 [CCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTANGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTTTTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGGGATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACTCGTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCCACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAAGTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCAAGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCATTCGCGGCATCGATCTTCAGTGGGACTCCAAC] consensusID : consensus_1449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACAGATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAGGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTTTTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGTGATTCCTTGCATCAGGATGTATGTGTAACGCANGCTTACCAANAAAAGCAATGCACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT] [+] EMBL CA765552 [ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACAGATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACGGACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGACGAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCCTGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCGACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGACGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCATGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGGTCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAGGCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTTTTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGTGATTCCTTGCATCAGGATGTATGTGTAACGCANGCTTACCAANAAAAGCAATGCACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1449#0 ------------------------------------------------------------ consensus_1449#1 ACACAATCTAATCTGCTCCATCAGGATACGAGTGAATTAAACATCGATCAAACGCATACA 60 consensus_1449#0 -----------------------------------------------------CCATACG 7 consensus_1449#1 GATCCCTCTGATATGAACGAAGATCCTTCGGGCTTTGAGTTACCCGAGGATTGCCATACG 120 ******* consensus_1449#0 GACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGAC 67 consensus_1449#1 GACACTGCACCAAAAGACTATCTCTTCACCGGTGGTGGATTCTGCATGGAAGAGGGTGAC 180 ************************************************************ consensus_1449#0 GAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCC 127 consensus_1449#1 GAGCAAGATACGGGAGTGGATCAATCTGGTGCAGAAATGGAGCATGAAACACGTGATGCC 240 ************************************************************ consensus_1449#0 TGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCG 187 consensus_1449#1 TGTGAGGGTATTGACGAGGTTTCTGAAAGTCAAAGCGGTAAAAGCATGAGCTATTCGGCG 300 ************************************************************ consensus_1449#0 ACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGA 247 consensus_1449#1 ACTGGAGAGGGCACAGAGAATGCAAATACAGAGGCCCGAGGGGCGTCTTCATCGCAGGGA 360 ************************************************************ consensus_1449#0 CGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCA 307 consensus_1449#1 CGCAATGCAAGCCGTGGTTCAGGTGCCGTGCCGAAGCTTACAAAGCGTAGGAGAAAATCA 420 ************************************************************ consensus_1449#0 TGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGG 367 consensus_1449#1 TGACTCATTTGCAGCAGATCATGCCTCGCACATCATGCCGTTTTGTTCAACTGGGCAAGG 480 ************************************************************ consensus_1449#0 TCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAN 427 consensus_1449#1 TCACGTTTCGATTTGTTCGGCAGCCAATGAGTTGCGGGCTTGCGGCGTTGTCGTCTGTAG 540 *********************************************************** consensus_1449#0 GCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCAGGCTTT 487 consensus_1449#1 GCCAAGTCTGAAGACTGAACAAAATGCAGGTCGGCATTCTGCACACCGTTTTCANGCTTT 600 ****************************************************** ***** consensus_1449#0 TTTAGCCTTCTGCCCATTGTTTTTCTAGGACAGGTATCGCGTGTGGGGGGAAACTGACGG 547 consensus_1449#1 TTCAGGNTTCTGTCCATTGNTTTTCTAGGACAGGTATCTATATTCGGNGTAAACTGACGT 660 ** ** ***** ****** ****************** * ** * ********* consensus_1449#0 GATTCCTGTGATCATGCATTTTACGACTCGTTACGCTCCCCTCGTCAAACCGAGCACT-C 606 consensus_1449#1 GATTCCTTGCATCAGG-ATGT----ATGTGTAACGCANGC-TTACCAANAAAAGCAATGC 714 ******* **** * ** * * ** **** * * *** **** * * consensus_1449#0 GTCCCGCCCAGTGTCGGGCGCCGACGCAGATACTCGCATTGGCGCGTGCGTAGCGTGGCC 666 consensus_1449#1 ACCCCGATGNAAATACTGNTNAAATTGNAATACNCCCCAAAAAACTGGCNAATT------ 768 **** * * * **** * * * ** * consensus_1449#0 ACCCCNAAAGTAACACGGTTTTAACCCACCGCTTTTCCGCTCTTTTCGCCCGGCCCGCAA 726 consensus_1449#1 ------------------------------------------------------------ consensus_1449#0 GTTTTTCCCGACCCATACCCCCCCCTAACATATTACCGAGGCAGCACACCNCTCACTTCA 786 consensus_1449#1 ------------------------------------------------------------ consensus_1449#0 AGTTTGCCTTCTGGTGGTGCGAGGACTGATCAGAGCGCGCTGCGCATCGCACATGTGCAT 846 consensus_1449#1 ------------------------------------------------------------ consensus_1449#0 TCGCGGCATCGATCTTCAGTGGGACTCCAAC 877 consensus_1449#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||