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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 885 fasta sequence
[AGCAGAGACAACCAGAGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCCGA-CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC-AAGGGCGACTGGCTCCTGTTCGAGTACC-AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC-AAC-TGCGAC-AAGGCGAACGCCATTAGCAGCTACAGCAA-GGGGCAC-AGCT-ACGCG-TTCCAGCTCAA-GGAGGCCAA-GGACTAC-TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA-GGGCTCCGCATCTTCTT-CCT-CCTCTGGCTCC-GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA-TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG-TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG-AAGAGTACATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA750716 [AGCAGAGACAACCAGAGTGACAGAGCAGAGTGAGGTGAGGC AGGT CCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCGCGC GC GCGGTGGCGAC ACTACACGGTGGGCGACGAGAAGGGGTGGA CCCGA CGTGGACTACACCGCt ]
[+] EMBL AK073121 [ AGACAACCAGAGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCCGA CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGAGTACAT ]
[+] EMBL CF291831 [ ACCAGAGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCCGA CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CC ]
[+] EMBL AU197336 [ AGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCGAA CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGACAAAGGNGAACGCAATTAGCAGCTACAGNAAGGGGGNAC AGCTAACGCGTTTCCAGCTCAA GGAGGCCAAGGGACTAA TAATTtc ]
[+] EMBL AU164916 [ AGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCCGA CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AACTTGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCGTTTCCAGCTCAAGGGAGGCCAA GGACTACTTACTTCATCTGCAGCTATGGNTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAAGGGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTTCTCCTCCTCCT ]
[+] EMBL CF305481 [ GCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAACCCCGA CGTGGACTACACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCCATGGCTACTGCTACAAAGGCATGAAG ]
[+] EMBL OSS3190A [ CCCTTCGTCTTCAAGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGNGCTGCTGCCGGCGGCGGCGGTGGCGACCAACTACACGGTGGGCGACGAGAAGGGGTGGAA CCCGACCGTGGACTACACCGNCTGGNTCAAGAAGCACCGCCCCTTCTAC AA ]
[+] EMBL CB096781 [ GGGTGGAACCCCGA CGTGGAC NCACCGCCTGGGTCAAGAAGCACCGCCCCTTCTAC AAGGGCGACTGGCTCCTGTTCGAGTACC AGAACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAATTTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGGTTTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAACTAAGAAAGAGTACATT ]
[+] EMBL AU197337 [ ACCCCGA CGTGGACTACNCCGGCTGGGCCAANAAGCACGGCCCTTTCTACAAAGGNCGACTGGCTCCTGTTCGAGTACCAAGAAC GGAGGTCGNACGTGGTGCAGGTGNACNAGGTCGGGTACGACAAAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCACAAGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGAGTACATTTTTTAAAAAAAAAAAA ]
[-] EMBL CF305186 [ AACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGAGTACATTTTTTAAAAAA ]
[-] EMBL CF291830 [ ACGGGAGGTCGGACGTGGTGCAGGTGGACGAGGTCGGGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCTTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTAaaaaa ]
[+] EMBL BE229943 [ GGTACGAC AAC TGCGAC AAGGCGAACGCCATTAGCAGCTACAGCAA GGGGCAC AGCT ACGCG TTCCAGCTCAA GGAGGCCAA GGACTAC TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAA GGGCTCCGCATCTTCTT CCT CCTCCGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTCTTCCAAGTCCAAGTCTTCCGCCG CG CTCCTCTCTCGCCAACCCCTCCTACGCCGACCTCCTCGCCGTCG CATCATCTTCCTCAGGATTCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGAAAGTTCATTTGGTCTTGATTTCTCTAACATTTTCCGGCCGG GTGGATTT ]
[+] EMBL AU164917 [ C TACTTCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCNAAGAA GGG TCCGNATCTTCTTCCCTCCCTCTGGCTCC GGCGACTCCTCCTCCTCCTCCAAGTCCGACACCGCCTNTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGNGTANATTTTTTAAAAA ]
[+] EMBL AU097245 [ AGAA GGG TCCGCATCTTCTT CCT CCTCTGGCTCCGGGCGACTCCTCCTCCTCCTCCAAGTCCGNCACCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGAGTACATTTTTTAAAAAAAAAA ]
[+] EMBL CA998310 [ CCTACGCCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGATCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAA TTTGTAAGTTCATTTGTTCTTGATTTCTCTAGCATTGTCCGGCCGG TTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATTATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAG AAGAGTACATTTTTTACCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence
[GCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCCTGCTGCCNNCNNNGCNNTNNCGACCAACTACACTGGCNGGCGACGAGAAGGGGTTGGAACCCAGCNTGGACTACACCGCCTGGGTCAAGAAGCACCGCC]
[+] EMBL AA751085 [GCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCGGATGCTGCCGTTGCTGGTGGTGGCGGTGGCCTGCTGCCNNCNNNGCNNTNNCGACCAACTACACTGGCNGGCGACGAGAAGGGGTTGGAACCCAGCNTGGACTACACCGCCTGGGTCAAGAAGCACCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14497#0 AGCAGAGACAACCAGAGTGACAGAGCAGAGTGAGGTGAGGCAAGGTCCCCTTCGTCTTCA 60
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 AGGCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCG 120
consensus_14497#1 --GCAAGCTCAGCTCAGAGCTCAGATCGATCGATCTGCCACTGGAGATGGTGTGCCACCG 58
**********************************************************
consensus_14497#0 GATGCTGCCGTTGCTGGTGGTGGCGGTGGCGCTGCTGCCGGCGGCGGCGGTGGCGACCAA 180
consensus_14497#1 GATGCTGCCGTTGCTGGTGGTGGCGGTGGC-CTGCTGCCNNCNNNG-CNNTNNCGACCAA 116
****************************** ******** * * * * *******
consensus_14497#0 CTACAC-GGTGGGCGACGAGAAGGGGTGGAACCCCGACGTGGACTACACCGCCTGGGTCA 239
consensus_14497#1 CTACACTGGCNGGCGACGAGAAGGGGTTGGAACCCAGCNTGGACTACACCGCCTGGGTCA 176
****** ** **************** * * *** * *********************
consensus_14497#0 AGAAGCACCGCCCCTTCTACAAGGGCGACTGGCTCCTGTTCGAGTACCAGAACGGGAGGT 299
consensus_14497#1 AGAAGCACCGCC------------------------------------------------ 188
************
consensus_14497#0 CGGACGTGGTGCAGGTGGACGAGGTCGGGTACGACAACTGCGACAAGGCGAACGCCATTA 359
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 GCAGCTACAGCAAGGGGCACAGCTACGCGTTCCAGCTCAAGGAGGCCAAGGACTACTACT 419
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 TCATCTGCAGCTATGGCTACTGCTACAAAGGCATGAAGCTCGCCGTCACCGCCAAGAAGG 479
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 GCTCCGCATCTTCTTCCTCCTCTGGCTCCGGCGACTCCTCCTCCTCCTCCAAGTCCGACA 539
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 CCGCCTCTTCCAAGTCCAAGTCTTCCGCCGCCGCCTCCTCTCTCGCCAACCCCTCCTACG 599
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 CCGCCCTCCTCGCCGTCGCCATCATCTTCCTCAGGATGCTCTGATTCTGATCTGATCTGA 659
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 TCTACCTCTGCTCGCCTCCTTTCTTGCTCGGTTTGTAATTTGTAAGTTCATTTGTTCTTG 719
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 ATTTCTCTAGCATTGTCCGGCCGGTTGGATTTTCTTTCTCCTAGAGATCGATCGAAAATT 779
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 ATTTTGAGATGTTTGTGTTGCAAAGATCTACCATTAGGTAGCAAGTGTGAATTAAGAAGA 839
consensus_14497#1 ------------------------------------------------------------
consensus_14497#0 GTACATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 885
consensus_14497#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||